Rh6DG350100

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001700
Physical Location & Seq
Reverse (-)
55081266 .. 55082920
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG350100.1

Sequence Viewer

Length: 936 bp
ATGGATGTTCCTACTGTGAACTTGGCTAGCAAAGCCTATGTTACTTTTTTGGCAGGCAACAAAGACTATGTGAAGGGAGTTGTGGGTTTGGCCAAGGGCTTGAGAAAGGCCAAATCCCAATACCCACTTGTTGTGGCGGTGCTTCCAGATGTCCCAGAGGAGCACCGGAAGATTCTCGAGTCTCAGGGCTGCATTGTCCGGGACATCGAGCCTGTGTACCCTCCGGAAAATCACCAAGCCGAGTTTGCCATGGCATATTATGTCATCAACTATTCAAAGCTTCGGATTTTCAATTTTGTGGAGTATAGCAAGATGATATACTTGGACGGAGACATACAAGTCTTTGACAACATTGATCACCTCTTTCACCTCCCGGATGGGTATTTCTATGCTGTCATGGATTGTTTCTGTGAAAAAACATGGAGTCACACTCCTCAAAGTAAGATCGGATATTGCCAACAATGTCCGGAAAAGGTTCAGTGGCCTGCTGAGTTAGGATCTCCACCCGCACCTTACTTCAACGCTGGCATGTTCGTCTATGAGCCTAAGCTCTCCACTTACAATAACCTACTCACATTCCTCAAAAGTACTCCTCCCACTCCTTTTGCTGAGCAGGACTTGTTGAACTTCTTCTTTAGGGATGTCTACAAGCCTATCCCTTCAGAGTACAACTTCATTCTTGCCATGTTATGGCAACATCCTGAGAATGTAAAGATTGATGCTCTGAAAGTTGTTCACTATTGTGCTGCGGGATCAAAGCCATGGAGGTATACGGGAGAGGAAGAGAACATGGAAAGAGAAGACATAAAGATGCTGGTGAAGAAGTGGTGGGACATTTACGATGACAGGTCGTTGGATTTGAAGAAGGTCCCGGCTGCTAGCTTGTTAGATCCGGTGATTGATAGTGAAGAAAGAAGTGCTCCTTCGGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

311

Amino Acids

35.77

Weight (kDa)

5.35

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 15 - 258 7.6e-45 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 690
AccI GTMKAC 2 cut(s) 645, 770
AccIII TCCGGA 2 cut(s) 223, 466
AciI CCGC 3 cut(s) 137, 507, 749
AclWI GGATC 3 cut(s) 505, 760, 884
AcoI YGGCCR 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 3 cut(s) 218, 589, 668
AfiI CCNNNNNNNGG 1 cut(s) 690
AgsI TTSAA 5 cut(s) 276, 292, 520, 625, 862
AleI CACNNNNGTG 1 cut(s) 741
AluBI AGCT 3 cut(s) 280, 550, 882
AluI AGCT 3 cut(s) 280, 550, 882
Alw21I GWGCWC 2 cut(s) 165, 922
Alw26I GTCTC 2 cut(s) 186, 324
AlwI GGATC 3 cut(s) 505, 760, 884
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 2 cut(s) 223, 466
AoxI GGCC 3 cut(s) 90, 108, 482
ApeKI GCWGC 4 cut(s) 189, 746, 875, 929
Asp700I GAANNNNTTC 2 cut(s) 474, 629
AspS9I GGNCC 1 cut(s) 868
AsuC2I CCSGG 3 cut(s) 200, 374, 872
AsuHPI GGTGA 5 cut(s) 224, 350, 359, 829, 907
AsuNHI GCTAGC 2 cut(s) 26, 878
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 868
BalI TGGCCA 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 807
Bbv12I GWGCWC 2 cut(s) 165, 922
BbvI GCAGC 4 cut(s) 176, 733, 862, 916
BccI CCATC 1 cut(s) 371
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 3 cut(s) 200, 374, 872
BcoDI GTCTC 2 cut(s) 186, 324
BfaI CTAG 3 cut(s) 27, 879, 934
BisI GCNGC 4 cut(s) 190, 747, 876, 930
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 4 cut(s) 191, 748, 877, 931
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 3 cut(s) 200, 374, 872
Bme18I GGWCC 1 cut(s) 868
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 868
BmiI GGNNCC 1 cut(s) 870
BmrFI CCNGG 3 cut(s) 200, 374, 872
BmsI GCATC 2 cut(s) 709, 801
BmtI GCTAGC 2 cut(s) 30, 882
BpiI GAAGAC 1 cut(s) 807
BplI GAGNNNNNCTC 2 cut(s) 415, 447
Bpu10I CCTNAGC 1 cut(s) 546
Bpu1102I GCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 121
BpuMI CCSGG 3 cut(s) 200, 374, 872
BsaJI CCNNGG 3 cut(s) 93, 249, 761
BsaWI WCCGGW 4 cut(s) 165, 223, 466, 892
Bsc4I CCNNNNNNNGG 1 cut(s) 690
BseAI TCCGGA 2 cut(s) 223, 466
BseDI CCNNGG 3 cut(s) 93, 249, 761
BseGI GGATG 4 cut(s) 10, 382, 646, 697
BseLI CCNNNNNNNGG 1 cut(s) 690
BseMII CTCAG 4 cut(s) 197, 480, 600, 693
BseRI GAGGAG 3 cut(s) 173, 423, 582
BseXI GCAGC 4 cut(s) 176, 733, 862, 916
BshFI GGCC 3 cut(s) 92, 110, 484
BsiHKAI GWGCWC 2 cut(s) 165, 922
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 7 cut(s) 166, 199, 224, 374, 467, 872, 893
BslFI GGGAC 4 cut(s) 137, 215, 845, 854
BslI CCNNNNNNNGG 1 cut(s) 690
BsmAI GTCTC 2 cut(s) 186, 324
BsmFI GGGAC 4 cut(s) 137, 215, 845, 854
BsnI GGCC 3 cut(s) 92, 110, 484
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 165, 922
Bsp13I TCCGGA 2 cut(s) 223, 466
Bsp143I GATC 5 cut(s) 355, 444, 497, 752, 889
Bsp1720I GCTNAGC 1 cut(s) 609
Bsp19I CCATGG 2 cut(s) 249, 761
BspACI CCGC 3 cut(s) 137, 507, 749
BspANI GGCC 3 cut(s) 92, 110, 484
BspCNI CTCAG 4 cut(s) 196, 481, 601, 694
BspEI TCCGGA 2 cut(s) 223, 466
BspLI GGNNCC 1 cut(s) 870
BspOI GCTAGC 2 cut(s) 30, 882
BspPI GGATC 3 cut(s) 505, 760, 884
BssECI CCNNGG 3 cut(s) 93, 249, 761
BssMI GATC 5 cut(s) 355, 444, 497, 752, 889
BssNAI GTATAC 1 cut(s) 771
BssT1I CCWWGG 3 cut(s) 93, 249, 761
Bst1107I GTATAC 1 cut(s) 771
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 777
BstC8I GCNNGC 5 cut(s) 28, 55, 486, 526, 880
BstDEI CTNAG 5 cut(s) 183, 489, 546, 609, 702
BstDSI CCRYGG 2 cut(s) 249, 761
BstF5I GGATG 4 cut(s) 10, 382, 646, 697
BstKTI GATC 5 cut(s) 358, 447, 500, 755, 892
BstMAI GTCTC 2 cut(s) 186, 324
BstMBI GATC 5 cut(s) 355, 444, 497, 752, 889
BstMWI GCNNNNNNNGC 3 cut(s) 32, 245, 926
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 3 cut(s) 198, 372, 870
BstV1I GCAGC 4 cut(s) 176, 733, 862, 916
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 2 cut(s) 497, 889
BstYI RGATCY 2 cut(s) 497, 889
BstZ17I GTATAC 1 cut(s) 771
BsuRI GGCC 3 cut(s) 92, 110, 484
BtgI CCRYGG 2 cut(s) 249, 761
BtsCI GGATG 4 cut(s) 10, 382, 646, 697
BtsIMutI CAGTG 1 cut(s) 485
Cac8I GCNNGC 5 cut(s) 28, 55, 486, 526, 880
Cfr13I GGNCC 1 cut(s) 868
Csp6I GTAC 3 cut(s) 217, 588, 667
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 7 cut(s) 250, 397, 420, 529, 685, 762, 790
CviQI GTAC 3 cut(s) 217, 588, 667
DdeI CTNAG 5 cut(s) 183, 489, 546, 609, 702
DpnI GATC 5 cut(s) 357, 446, 499, 754, 891
DpnII GATC 5 cut(s) 355, 444, 497, 752, 889
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 777
EarI CTCTTC 1 cut(s) 777
Eco130I CCWWGG 3 cut(s) 93, 249, 761
Eco47I GGWCC 1 cut(s) 868
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 868
EcoT14I CCWWGG 3 cut(s) 93, 249, 761
ErhI CCWWGG 3 cut(s) 93, 249, 761
FaeI CATG 7 cut(s) 253, 400, 423, 532, 688, 765, 793
FalI AAGNNNNNCTT 1 cut(s) 907
FaqI GGGAC 4 cut(s) 137, 215, 845, 854
FatI CATG 7 cut(s) 249, 396, 419, 528, 684, 761, 789
FauI CCCGC 2 cut(s) 514, 742
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 2 cut(s) 645, 770
Fnu4HI GCNGC 4 cut(s) 190, 747, 876, 930
FokI GGATG 4 cut(s) 17, 389, 653, 684
Fsp4HI GCNGC 4 cut(s) 190, 747, 876, 930
FspBI CTAG 3 cut(s) 27, 879, 934
GluI GCNGC 4 cut(s) 190, 747, 876, 930
HaeIII GGCC 3 cut(s) 92, 110, 484
HapII CCGG 7 cut(s) 166, 199, 224, 374, 467, 872, 893
Hin1II CATG 7 cut(s) 253, 400, 423, 532, 688, 765, 793
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 3 cut(s) 172, 179, 424
HpaII CCGG 7 cut(s) 166, 199, 224, 374, 467, 872, 893
HphI GGTGA 5 cut(s) 224, 350, 359, 829, 907
Hpy166II GTNNAC 5 cut(s) 19, 217, 646, 736, 771
Hpy188I TCNGA 4 cut(s) 285, 449, 664, 726
Hpy188III TCNNGA 5 cut(s) 146, 176, 224, 467, 701
Hpy8I GTNNAC 5 cut(s) 19, 217, 646, 736, 771
HpyAV CCTTC 4 cut(s) 67, 669, 859, 933
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 245, 926
HpyF3I CTNAG 5 cut(s) 183, 489, 546, 609, 702
Hsp92II CATG 7 cut(s) 253, 400, 423, 532, 688, 765, 793
Kpn2I TCCGGA 2 cut(s) 223, 466
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 5 cut(s) 355, 444, 497, 752, 889
LmnI GCTCC 2 cut(s) 160, 925
Lsp1109I GCAGC 4 cut(s) 176, 733, 862, 916
LweI GCATC 2 cut(s) 709, 801
MaeI CTAG 3 cut(s) 27, 879, 934
MaeIII GTNAC 2 cut(s) 40, 425
MalI GATC 5 cut(s) 357, 446, 499, 754, 891
MboI GATC 5 cut(s) 355, 444, 497, 752, 889
MboII GAAGA 7 cut(s) 181, 622, 794, 812, 832, 874, 920
MflI RGATCY 2 cut(s) 497, 889
MhlI GDGCHC 2 cut(s) 165, 922
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 1 cut(s) 292
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 2 cut(s) 188, 433
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 9 cut(s) 151, 231, 371, 380, 444, 590, 603, 759, 772
Mox20I TGGCCA 1 cut(s) 92
MroI TCCGGA 2 cut(s) 223, 466
MroXI GAANNNNTTC 2 cut(s) 474, 629
MscI TGGCCA 1 cut(s) 92
MslI CAYNNNNRTG 2 cut(s) 741, 809
Msp20I TGGCCA 1 cut(s) 92
MspI CCGG 7 cut(s) 166, 199, 224, 374, 467, 872, 893
MspR9I CCNGG 3 cut(s) 200, 374, 872
MwoI GCNNNNNNNGC 3 cut(s) 32, 245, 926
NciI CCSGG 3 cut(s) 200, 374, 872
NcoI CCATGG 2 cut(s) 249, 761
NdeII GATC 5 cut(s) 355, 444, 497, 752, 889
NheI GCTAGC 2 cut(s) 26, 878
NlaIII CATG 7 cut(s) 253, 400, 423, 532, 688, 765, 793
NlaIV GGNNCC 1 cut(s) 870
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 425
NspI RCATGY 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 741
PaeR7I CTCGAG 1 cut(s) 176
PdmI GAANNNNTTC 2 cut(s) 474, 629
PfeI GAWTC 1 cut(s) 172
PflMI CCANNNNNTGG 1 cut(s) 690
PfoI TCCNGGA 2 cut(s) 198, 372
PkrI GCNGC 4 cut(s) 191, 748, 877, 931
PleI GAGTC 2 cut(s) 187, 432
PpsI GAGTC 2 cut(s) 187, 432
PpuMI RGGWCCY 1 cut(s) 868
Psp5II RGGWCCY 1 cut(s) 868
PspN4I GGNNCC 1 cut(s) 870
PspPI GGNCC 1 cut(s) 868
PspPPI RGGWCCY 1 cut(s) 868
PsuI RGATCY 2 cut(s) 497, 889
RsaI GTAC 3 cut(s) 218, 589, 668
RsaNI GTAC 3 cut(s) 217, 588, 667
RseI CAYNNNNRTG 2 cut(s) 741, 809
SatI GCNGC 4 cut(s) 190, 747, 876, 930
Sau3AI GATC 5 cut(s) 355, 444, 497, 752, 889
Sau96I GGNCC 1 cut(s) 868
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 2 cut(s) 188, 433
ScrFI CCNGG 3 cut(s) 200, 374, 872
SduI GDGCHC 2 cut(s) 165, 922
SfaNI GCATC 2 cut(s) 709, 801
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 868
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 741, 809
SmlI CTYRAG 2 cut(s) 100, 176
SmoI CTYRAG 2 cut(s) 100, 176
Sse9I AATT 1 cut(s) 292
SsiI CCGC 3 cut(s) 137, 507, 749
SspMI CTAG 3 cut(s) 27, 879, 934
StyD4I CCNGG 3 cut(s) 198, 372, 870
StyI CCWWGG 3 cut(s) 93, 249, 761
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 177, 207
TasI AATT 1 cut(s) 292
TatI WGTACW 2 cut(s) 587, 666
TfiI GAWTC 1 cut(s) 172
TscAI CASTG 1 cut(s) 485
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 4 cut(s) 189, 746, 875, 929
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 1 cut(s) 664
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 485
Van91I CCANNNNNTGG 1 cut(s) 690
VpaK11BI GGWCC 1 cut(s) 868
XceI RCATGY 1 cut(s) 532
XhoI CTCGAG 1 cut(s) 176
XmiI GTMKAC 2 cut(s) 645, 770
XmnI GAANNNNTTC 2 cut(s) 474, 629
XspI CTAG 3 cut(s) 27, 879, 934
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.