Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Forward (+)

70761163 .. 70762839

Gene Structure 1677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG406100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTCCACCTGAAGTTCCGGTAGATGTGTTCACGGCCACCAGCAAGGTCTTGACGTTGAGTGCAGGCTACTCCAAGAGGGCCTATGTGACATTCTTAGCCGGTAATGGTGACTACGTCAAAGGAGTCGTGGGATTGGCTAAGGGTTTGCGCAAGGTGAAGACTGCCTACCCTCTAGTGGTTGCAATATTGCCTGACGTCCCGGAAGAACACCGTGAGATTTTGAGGTCTCAAGGTTGTATTGTTCGTGAGATCGTGCCAATTTATCCTCCTAAGAACCAAGTCGAGTTTGCTATGGCATATTATGTCATCAACTACTCCAAGCTCCGGATTTGGAATTTTGAGGAGTACAGCAAGATGATATATTTGGATGCGGACATCCAAGTGTACAACAACATAGATCACCTCTTTGACACTCCTGATGGATACTTCTATGCCGTGATGGATTGCTTCTGTGAACATACATGGAGTCACTCGCCGCAGTACAAAGTTGGGTATTGCCAGCAGTGCCCAGACAAGGTTACATGGCCGGCCGAGATGGGTTCTCCTCCTCCGTCGTACTTCAACGCCGGCATGTTTGTGTTTGAGCCTAATCGTTTGACCTACGAAAGCCTTCTCGAGAATCTCCTGGTTGTTCCTCCCACACCTTTTGCAGAGCAAGATTTCTTGAACATGTTCTTCCAAAAGACTTACAAGGCCATCCCTCTTGCATACAACCTAGTTCTGGCCATGCTGTGGCGCCACCCAGAGAATGTGAAGCTTGATGAAGTAAACGTTGTCCACTACTGTGCTGCTGTAAGTAGCATTGTTTTACCTTCAAACCCATTACTTTCAAATTTCCAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

282

Amino Acids

32.15

Weight (kDa)

5.53

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	31 - 264	2.8e-43	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
Acc16I	TGCGCA	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	738
AccB7I	CCANNNNNTGG	1 cut(s)	735
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	2 cut(s)	374, 479
AclI	AACGTT	1 cut(s)	774
AcoI	YGGCCR	4 cut(s)	36, 527, 531, 726
AcsI	RAATTY	2 cut(s)	337, 835
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	2 cut(s)	198, 739
AfaI	GTAC	4 cut(s)	350, 389, 485, 560
AfiI	CCNNNNNNNGG	5 cut(s)	178, 327, 517, 724, 735
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	4 cut(s)	565, 670, 819, 834
AjnI	CCWGG	1 cut(s)	627
AleI	CACNNNNGTG	1 cut(s)	786
AluBI	AGCT	2 cut(s)	325, 760
AluI	AGCT	2 cut(s)	325, 760
Alw26I	GTCTC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	617
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	6 cut(s)	36, 81, 527, 531, 696, 726
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	2 cut(s)	337, 835
Asp700I	GAANNNNTTC	2 cut(s)	612, 674
AspLEI	GCGC	2 cut(s)	153, 741
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	122, 169, 395
AvaI	CYCGRG	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	512
BalI	TGGCCA	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	738
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	778
BccI	CCATC	4 cut(s)	416, 436, 532, 707
BceAI	ACGGC	2 cut(s)	51, 422
BciT130I	CCWGG	1 cut(s)	629
BciVI	GTATCC	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	2 cut(s)	176, 719
BfoI	RGCGCY	1 cut(s)	742
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	2 cut(s)	479, 792
BlsI	GCNGC	2 cut(s)	480, 793
Bme1390I	CCNGG	2 cut(s)	203, 629
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	2 cut(s)	6, 740
BmrFI	CCNGG	2 cut(s)	203, 629
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	2 cut(s)	198, 739
BsaI	GGTCTC	1 cut(s)	234
BsaWI	WCCGGW	2 cut(s)	19, 327
Bsc4I	CCNNNNNNNGG	5 cut(s)	178, 327, 517, 724, 735
Bse118I	RCCGGY	3 cut(s)	101, 529, 569
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	629
BseGI	GGATG	3 cut(s)	376, 378, 699
BseLI	CCNNNNNNNGG	5 cut(s)	178, 327, 517, 724, 735
BseRI	GAGGAG	3 cut(s)	359, 537, 540
BseSI	GKGCMC	1 cut(s)	512
BseX3I	CGGCCG	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	778
BsgI	GTGCAG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	534
BshFI	GGCC	6 cut(s)	38, 83, 529, 533, 698, 728
BshNI	GGYRCC	1 cut(s)	738
BsiEI	CGRYCG	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	6 cut(s)	20, 102, 203, 328, 530, 570
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	5 cut(s)	178, 327, 517, 724, 735
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	6 cut(s)	38, 83, 529, 533, 698, 728
Bso31I	GGTCTC	1 cut(s)	234
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	252, 400
BspACI	CCGC	2 cut(s)	374, 479
BspANI	GGCC	6 cut(s)	38, 83, 529, 533, 698, 728
BspEI	TCCGGA	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	6, 740
BspT107I	GGYRCC	1 cut(s)	738
BspTNI	GGTCTC	1 cut(s)	234
BsrFI	RCCGGY	3 cut(s)	101, 529, 569
BsrGI	TGTACA	1 cut(s)	387
BssAI	RCCGGY	3 cut(s)	101, 529, 569
BssMI	GATC	2 cut(s)	252, 400
BssNI	GRCGYC	2 cut(s)	198, 739
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	2 cut(s)	215, 788
BstACI	GRCGYC	2 cut(s)	198, 739
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	4 cut(s)	67, 503, 531, 571
BstDEI	CTNAG	3 cut(s)	97, 141, 273
BstF5I	GGATG	3 cut(s)	376, 378, 699
BstH2I	RGCGCY	1 cut(s)	742
BstHHI	GCGC	2 cut(s)	153, 741
BstKTI	GATC	2 cut(s)	255, 403
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	2 cut(s)	252, 400
BstMCI	CGRYCG	1 cut(s)	534
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	2 cut(s)	577, 676
BstSCI	CCNGG	2 cut(s)	201, 627
BstSLI	GKGCMC	1 cut(s)	512
BstV1I	GCAGC	1 cut(s)	778
BstV2I	GAAGAC	1 cut(s)	167
BstZI	CGGCCG	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	6 cut(s)	38, 83, 529, 533, 698, 728
BtsCI	GGATG	3 cut(s)	376, 378, 699
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	4 cut(s)	67, 503, 531, 571
CfoI	GCGC	2 cut(s)	153, 741
Cfr10I	RCCGGY	3 cut(s)	101, 529, 569
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	4 cut(s)	349, 388, 484, 559
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	5 cut(s)	465, 525, 574, 673, 730
CviQI	GTAC	4 cut(s)	349, 388, 484, 559
DdeI	CTNAG	3 cut(s)	97, 141, 273
DinI	GGCGCC	1 cut(s)	740
DpnI	GATC	2 cut(s)	254, 402
DpnII	GATC	2 cut(s)	252, 400
EaeI	YGGCCR	4 cut(s)	36, 527, 531, 726
EagI	CGGCCG	1 cut(s)	531
EclXI	CGGCCG	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	627
EgeI	GGCGCC	1 cut(s)	740
EheI	GGCGCC	1 cut(s)	740
FaeI	CATG	5 cut(s)	468, 528, 577, 676, 733
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	5 cut(s)	464, 524, 573, 672, 729
Fnu4HI	GCNGC	2 cut(s)	479, 792
FokI	GGATG	3 cut(s)	365, 383, 686
FseI	GGCCGGCC	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	479, 792
FspBI	CTAG	2 cut(s)	176, 719
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	2 cut(s)	152, 740
GluI	GCNGC	2 cut(s)	479, 792
HaeII	RGCGCY	1 cut(s)	742
HaeIII	GGCC	6 cut(s)	38, 83, 529, 533, 698, 728
HapII	CCGG	6 cut(s)	20, 102, 203, 328, 530, 570
HhaI	GCGC	2 cut(s)	153, 741
Hin1I	GRCGYC	2 cut(s)	198, 739
Hin1II	CATG	5 cut(s)	468, 528, 577, 676, 733
Hin6I	GCGC	2 cut(s)	151, 739
HinP1I	GCGC	2 cut(s)	151, 739
HindIII	AAGCTT	1 cut(s)	758
HinfI	GANTC	3 cut(s)	126, 469, 622
HpaII	CCGG	6 cut(s)	20, 102, 203, 328, 530, 570
HphI	GGTGA	3 cut(s)	122, 169, 395
Hpy166II	GTNNAC	5 cut(s)	33, 388, 458, 772, 781
Hpy188III	TCNNGA	7 cut(s)	52, 248, 328, 419, 617, 619, 667
Hpy8I	GTNNAC	5 cut(s)	33, 388, 458, 772, 781
Hpy99I	CGWCG	1 cut(s)	559
HpyAV	CCTTC	2 cut(s)	623, 825
HpyCH4III	ACNGT	2 cut(s)	215, 788
HpyCH4IV	ACGT	4 cut(s)	56, 117, 198, 774
HpyCH4V	TGCA	4 cut(s)	65, 185, 653, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	3 cut(s)	97, 141, 273
HpySE526I	ACGT	4 cut(s)	56, 117, 198, 774
Hsp92I	GRCGYC	2 cut(s)	198, 739
Hsp92II	CATG	5 cut(s)	468, 528, 577, 676, 733
HspAI	GCGC	2 cut(s)	151, 739
KasI	GGCGCC	1 cut(s)	738
Kpn2I	TCCGGA	1 cut(s)	327
KroI	GCCGGC	2 cut(s)	529, 569
KroNI	GCCGGC	2 cut(s)	531, 571
Kzo9I	GATC	2 cut(s)	252, 400
LmnI	GCTCC	2 cut(s)	10, 330
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	2 cut(s)	176, 719
MaeII	ACGT	4 cut(s)	56, 117, 198, 774
MaeIII	GTNAC	4 cut(s)	88, 110, 470, 520
MalI	GATC	2 cut(s)	254, 402
MboI	GATC	2 cut(s)	252, 400
MboII	GAAGA	3 cut(s)	172, 218, 670
MhlI	GDGCHC	1 cut(s)	512
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	3 cut(s)	261, 337, 835
MluNI	TGGCCA	1 cut(s)	728
Mly113I	GGCGCC	1 cut(s)	739
MlyI	GAGTC	2 cut(s)	135, 478
Mox20I	TGGCCA	1 cut(s)	728
MroI	TCCGGA	1 cut(s)	327
MroNI	GCCGGC	2 cut(s)	529, 569
MroXI	GAANNNNTTC	2 cut(s)	612, 674
MscI	TGGCCA	1 cut(s)	728
MslI	CAYNNNNRTG	3 cut(s)	383, 578, 786
Msp20I	TGGCCA	1 cut(s)	728
MspI	CCGG	6 cut(s)	20, 102, 203, 328, 530, 570
MspR9I	CCNGG	2 cut(s)	203, 629
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	1 cut(s)	507
NaeI	GCCGGC	2 cut(s)	531, 571
NarI	GGCGCC	1 cut(s)	739
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	252, 400
NgoMIV	GCCGGC	2 cut(s)	529, 569
NlaIII	CATG	5 cut(s)	468, 528, 577, 676, 733
NlaIV	GGNNCC	2 cut(s)	6, 740
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	3 cut(s)	88, 110, 470
NsbI	TGCGCA	1 cut(s)	152
NspI	RCATGY	2 cut(s)	577, 676
OliI	CACNNNNGTG	1 cut(s)	786
PaeR7I	CTCGAG	1 cut(s)	617
PciI	ACATGT	1 cut(s)	672
PdiI	GCCGGC	2 cut(s)	531, 571
PdmI	GAANNNNTTC	2 cut(s)	612, 674
PfeI	GAWTC	1 cut(s)	622
PflFI	GACNNNGTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	735
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	480, 793
PleI	GAGTC	2 cut(s)	134, 477
PluTI	GGCGCC	1 cut(s)	742
PpsI	GAGTC	2 cut(s)	134, 477
PscI	ACATGT	1 cut(s)	672
Psp1406I	AACGTT	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	2 cut(s)	6, 740
PspPI	GGNCC	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	116
RigI	GGCCGGCC	1 cut(s)	533
RsaI	GTAC	4 cut(s)	350, 389, 485, 560
RsaNI	GTAC	4 cut(s)	349, 388, 484, 559
RseI	CAYNNNNRTG	3 cut(s)	383, 578, 786
SatI	GCNGC	2 cut(s)	479, 792
Sau3AI	GATC	2 cut(s)	252, 400
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	2 cut(s)	135, 478
ScrFI	CCNGG	2 cut(s)	203, 629
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	1 cut(s)	361
SfoI	GGCGCC	1 cut(s)	740
Sfr274I	CTCGAG	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	3 cut(s)	383, 578, 786
SmlI	CTYRAG	2 cut(s)	231, 617
SmoI	CTYRAG	2 cut(s)	231, 617
Sse9I	AATT	3 cut(s)	261, 337, 835
SsiI	CCGC	2 cut(s)	374, 479
SspDI	GGCGCC	1 cut(s)	738
SspI	AATATT	1 cut(s)	189
SspMI	CTAG	2 cut(s)	176, 719
StyD4I	CCNGG	2 cut(s)	201, 627
TaaI	ACNGT	2 cut(s)	215, 788
TaiI	ACGT	4 cut(s)	59, 120, 201, 777
TaqI	TCGA	2 cut(s)	285, 618
TasI	AATT	3 cut(s)	261, 337, 835
TatI	WGTACW	3 cut(s)	348, 387, 483
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	622
TscAI	CASTG	1 cut(s)	512
TseFI	GTSAC	3 cut(s)	88, 110, 470
TseI	GCWGC	1 cut(s)	791
Tsp45I	GTSAC	3 cut(s)	88, 110, 470
TspDTI	ATGAA	1 cut(s)	780
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	1 cut(s)	512
Tth111I	GACNNNGTC	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	735
XapI	RAATTY	2 cut(s)	337, 835
XceI	RCATGY	2 cut(s)	577, 676
XhoI	CTCGAG	1 cut(s)	617
XmnI	GAANNNNTTC	2 cut(s)	612, 674
XspI	CTAG	2 cut(s)	176, 719
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.