Rw4G023080

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
48671333 .. 48672936
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023080.1

Sequence Viewer

Length: 987 bp
ATGTCTCCTCCAGAACAGACAAACGGAGTACCAAAGAGAGCATACGTGACCTTCTTGGCGGGCAACGGGGACTATGTGAAAGGTGTGGTTGGTCTGGCCAAGGGCCTCAGAAAGGCCAAATCTGCCTACCCACTTGTGGTGGCTGTGTTGCCAGATGTTCCCGCAGAGCACCTTCAGATTCTTGAGTCTCAGGGGTGCGTTGTGCGCCCGATTGAGCCAGTCTACCCTCCTGAGAACCGGACCCAGTTTTCCATGGCTTACTATGTCATCAACTACTCAAAGCTCCGTATTTGGGAGTTTGTGGAGTATGAGAAGCTGATTTACCTGGATGGCGATATACAAGTGTTTGATAACATTGATCACCTGTTTGACATGCCCAGCGGCTACTTCTACGCCGTGATGGATTGCTTTTGTGAGAACACATGGAGTCACTCTCCTCAGTTTAAGATCGGATACTGCCAGCAGTACCCTGAAAAGGTGCAGTGGCCAGCAGACATGGGCTCGCCGCCACCACCTTACTTCAACGCCGGCATGTTTGTCTATGAGCCTGGTCTTCCAACTTACCATGATCTGTTAGAGACCGTCAAAGTCACCACTCCTTCCTCATTTGCTGAGCAGGACTTCTTGAACATGTACTTCAAGGACATATACCAGCCTATCCCTCCGGTGTACAACCTTGTCTTGGCAATGCTGTGGCGCCACCCTGAAAATGTTGACCTTGACAGAGTGAAGGTTGTTCATTATTGTGCTGCGGGATCAAAGCCGTGGAGGTACACTGGTAAGGAAGAGTATATGGAGAGGGAAGACATAAAGATGCTGGTGAAGAAATGGTGGGACATATATGAAGACCCTTCATTGGATTACAATTACAACGACGATGTTATTGTGAAGGCTGAGAATGAGCGTACTGTAAAGCTTGGACCTTTCATTGCTGCGTTGGCAGATGCTGGTGTTGATCACCAGAGAAGTGCACCATCTGCTGCTTAA

Protein Analysis

328

Amino Acids

37.66

Weight (kDa)

5.01

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 17 - 259 7.1e-45 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 696
AccI GTMKAC 1 cut(s) 222
AciI CCGC 5 cut(s) 59, 162, 381, 506, 752
AclWI GGATC 1 cut(s) 763
AcoI YGGCCR 2 cut(s) 96, 485
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 6 cut(s) 30, 467, 635, 671, 773, 907
AfiI CCNNNNNNNGG 6 cut(s) 112, 136, 292, 475, 682, 856
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 3 cut(s) 523, 628, 640
AjnI CCWGG 2 cut(s) 324, 547
AluBI AGCT 3 cut(s) 283, 316, 916
AluI AGCT 3 cut(s) 283, 316, 916
Alw21I GWGCWC 2 cut(s) 171, 973
Alw26I GTCTC 3 cut(s) 9, 192, 572
Alw44I GTGCAC 1 cut(s) 969
AlwI GGATC 1 cut(s) 763
AlwNI CAGNNNCTG 1 cut(s) 947
AoxI GGCC 4 cut(s) 96, 103, 114, 485
ApaLI GTGCAC 1 cut(s) 969
ApeKI GCWGC 3 cut(s) 749, 932, 980
AspLEI GCGC 2 cut(s) 207, 699
AspS9I GGNCC 3 cut(s) 103, 240, 920
AsuHPI GGTGA 4 cut(s) 353, 583, 832, 950
AvaII GGWCC 2 cut(s) 240, 920
BaeGI GKGCMC 1 cut(s) 973
BaeI ACNNNNGTAYC 2 cut(s) 763, 796
BalI TGGCCA 2 cut(s) 98, 487
BanI GGYRCC 1 cut(s) 696
BanII GRGCYC 1 cut(s) 503
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BbsI GAAGAC 3 cut(s) 545, 810, 852
Bbv12I GWGCWC 2 cut(s) 171, 973
BbvI GCAGC 3 cut(s) 736, 919, 967
BccI CCATC 3 cut(s) 323, 394, 982
BceAI ACGGC 2 cut(s) 380, 748
BciT130I CCWGG 2 cut(s) 326, 549
BciVI GTATCC 1 cut(s) 446
BclI TGATCA 2 cut(s) 358, 955
BcoDI GTCTC 3 cut(s) 9, 192, 572
BfoI RGCGCY 1 cut(s) 700
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 5 cut(s) 382, 506, 750, 933, 981
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 5 cut(s) 383, 507, 751, 934, 982
Bme1390I CCNGG 2 cut(s) 326, 549
Bme18I GGWCC 2 cut(s) 240, 920
BmgT120I GGNCC 3 cut(s) 103, 240, 920
BmiI GGNNCC 2 cut(s) 242, 698
BmrFI CCNGG 2 cut(s) 326, 549
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 804, 934
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 3 cut(s) 545, 810, 852
BplI GAGNNNNNCTC 2 cut(s) 418, 450
Bpu1102I GCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 697
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 99, 252, 764
BsaWI WCCGGW 2 cut(s) 237, 664
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 136, 292, 475, 682, 856
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 3 cut(s) 218, 244, 781
Bse3DI GCAATG 2 cut(s) 693, 927
BseBI CCWGG 2 cut(s) 326, 549
BseDI CCNNGG 3 cut(s) 99, 252, 764
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 6 cut(s) 112, 136, 292, 475, 682, 856
BseMI GCAATG 2 cut(s) 693, 927
BseMII CTCAG 6 cut(s) 121, 203, 222, 452, 603, 885
BseNI ACTGG 3 cut(s) 218, 244, 781
BseRI GAGGAG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 973
BseXI GCAGC 3 cut(s) 736, 919, 967
BseYI CCCAGC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 500
BshFI GGCC 4 cut(s) 98, 105, 116, 487
BshNI GGYRCC 1 cut(s) 696
BsiHKAI GWGCWC 2 cut(s) 171, 973
BsiSI CCGG 3 cut(s) 238, 528, 665
BslFI GGGAC 2 cut(s) 83, 848
BslI CCNNNNNNNGG 6 cut(s) 112, 136, 292, 475, 682, 856
BsmAI GTCTC 3 cut(s) 9, 192, 572
BsmFI GGGAC 2 cut(s) 83, 848
BsnI GGCC 4 cut(s) 98, 105, 116, 487
Bso31I GGTCTC 1 cut(s) 572
Bsp1286I GDGCHC 3 cut(s) 171, 503, 973
Bsp1407I TGTACA 1 cut(s) 669
Bsp143I GATC 5 cut(s) 358, 447, 568, 755, 955
Bsp1720I GCTNAGC 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 5 cut(s) 59, 162, 381, 506, 752
BspANI GGCC 4 cut(s) 98, 105, 116, 487
BspCNI CTCAG 6 cut(s) 120, 202, 223, 451, 604, 886
BspLI GGNNCC 2 cut(s) 242, 698
BspPI GGATC 1 cut(s) 763
BspT107I GGYRCC 1 cut(s) 696
BspTNI GGTCTC 1 cut(s) 572
BsrDI GCAATG 2 cut(s) 693, 927
BsrFI RCCGGY 1 cut(s) 527
BsrGI TGTACA 1 cut(s) 669
BsrI ACTGG 3 cut(s) 218, 244, 781
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 3 cut(s) 99, 252, 764
BssMI GATC 5 cut(s) 358, 447, 568, 755, 955
BssNI GRCGYC 1 cut(s) 697
BssT1I CCWWGG 2 cut(s) 99, 252
Bst2UI CCWGG 2 cut(s) 326, 549
Bst4CI ACNGT 2 cut(s) 583, 910
Bst6I CTCTTC 1 cut(s) 780
BstACI GRCGYC 1 cut(s) 697
BstAPI GCANNNNNTGC 1 cut(s) 977
BstAUI TGTACA 1 cut(s) 669
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 5 cut(s) 61, 461, 489, 503, 529
BstDEI CTNAG 6 cut(s) 107, 189, 231, 438, 612, 894
BstDSI CCRYGG 2 cut(s) 252, 764
BstENI CCTNNNNNAGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 2 cut(s) 207, 699
BstKTI GATC 5 cut(s) 361, 450, 571, 758, 958
BstMAI GTCTC 3 cut(s) 9, 192, 572
BstMBI GATC 5 cut(s) 358, 447, 568, 755, 955
BstMWI GCNNNNNNNGC 4 cut(s) 122, 204, 938, 977
BstNI CCWGG 2 cut(s) 326, 549
BstNSI RCATGY 3 cut(s) 376, 535, 634
BstSCI CCNGG 2 cut(s) 324, 547
BstSLI GKGCMC 1 cut(s) 973
BstV1I GCAGC 3 cut(s) 736, 919, 967
BstV2I GAAGAC 3 cut(s) 545, 810, 852
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 4 cut(s) 98, 105, 116, 487
BtgI CCRYGG 2 cut(s) 252, 764
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 2 cut(s) 488, 774
Cac8I GCNNGC 5 cut(s) 61, 461, 489, 503, 529
CaiI CAGNNNCTG 1 cut(s) 947
CfoI GCGC 2 cut(s) 207, 699
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 3 cut(s) 103, 240, 920
Csp6I GTAC 6 cut(s) 29, 466, 634, 670, 772, 906
CviAII CATG 7 cut(s) 253, 373, 423, 496, 532, 566, 631
CviQI GTAC 6 cut(s) 29, 466, 634, 670, 772, 906
DdeI CTNAG 6 cut(s) 107, 189, 231, 438, 612, 894
DinI GGCGCC 1 cut(s) 698
DpnI GATC 5 cut(s) 360, 449, 570, 757, 957
DpnII GATC 5 cut(s) 358, 447, 568, 755, 955
EaeI YGGCCR 2 cut(s) 96, 485
Eam1104I CTCTTC 1 cut(s) 780
EarI CTCTTC 1 cut(s) 780
Eco130I CCWWGG 2 cut(s) 99, 252
Eco24I GRGCYC 1 cut(s) 503
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 2 cut(s) 240, 920
Eco57I CTGAAG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 324, 547
EcoT14I CCWWGG 2 cut(s) 99, 252
EcoT38I GRGCYC 1 cut(s) 503
EgeI GGCGCC 1 cut(s) 698
EheI GGCGCC 1 cut(s) 698
ErhI CCWWGG 2 cut(s) 99, 252
FaeI CATG 7 cut(s) 256, 376, 426, 499, 535, 569, 634
FaqI GGGAC 2 cut(s) 83, 848
FatI CATG 7 cut(s) 252, 372, 422, 495, 531, 565, 630
FauI CCCGC 3 cut(s) 52, 169, 745
FbaI TGATCA 2 cut(s) 358, 955
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 5 cut(s) 382, 506, 750, 933, 981
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 5 cut(s) 382, 506, 750, 933, 981
GlaI GCGC 2 cut(s) 206, 698
GluI GCNGC 5 cut(s) 382, 506, 750, 933, 981
GsaI CCCAGC 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 700
HaeIII GGCC 4 cut(s) 98, 105, 116, 487
HapII CCGG 3 cut(s) 238, 528, 665
HhaI GCGC 2 cut(s) 207, 699
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 7 cut(s) 256, 376, 426, 499, 535, 569, 634
Hin6I GCGC 2 cut(s) 205, 697
HinP1I GCGC 2 cut(s) 205, 697
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 3 cut(s) 178, 185, 427
HpaII CCGG 3 cut(s) 238, 528, 665
HphI GGTGA 4 cut(s) 353, 583, 832, 950
Hpy166II GTNNAC 5 cut(s) 223, 670, 715, 774, 971
Hpy188I TCNGA 3 cut(s) 110, 177, 452
Hpy188III TCNNGA 4 cut(s) 11, 182, 230, 625
Hpy8I GTNNAC 5 cut(s) 223, 670, 715, 774, 971
Hpy99I CGWCG 1 cut(s) 878
HpyAV CCTTC 6 cut(s) 61, 182, 609, 724, 861, 883
HpyCH4III ACNGT 2 cut(s) 583, 910
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 481, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 204, 938, 977
HpyF3I CTNAG 6 cut(s) 107, 189, 231, 438, 612, 894
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 7 cut(s) 256, 376, 426, 499, 535, 569, 634
HspAI GCGC 2 cut(s) 205, 697
KasI GGCGCC 1 cut(s) 696
KroI GCCGGC 1 cut(s) 527
KroNI GCCGGC 1 cut(s) 529
Ksp22I TGATCA 2 cut(s) 358, 955
Kzo9I GATC 5 cut(s) 358, 447, 568, 755, 955
LmnI GCTCC 1 cut(s) 288
Lsp1109I GCAGC 3 cut(s) 736, 919, 967
LweI GCATC 2 cut(s) 804, 934
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 46, 428, 589
MalI GATC 5 cut(s) 360, 449, 570, 757, 957
MboI GATC 5 cut(s) 358, 447, 568, 755, 955
MboII GAAGA 5 cut(s) 545, 797, 815, 835, 857
MhlI GDGCHC 3 cut(s) 171, 503, 973
MlsI TGGCCA 2 cut(s) 98, 487
MluCI AATT 1 cut(s) 865
MluNI TGGCCA 2 cut(s) 98, 487
Mly113I GGCGCC 1 cut(s) 697
MlyI GAGTC 2 cut(s) 194, 436
MmeI TCCRAC 1 cut(s) 581
MnlI CCTC 8 cut(s) 18, 116, 237, 447, 613, 672, 762, 792
Mox20I TGGCCA 2 cut(s) 98, 487
MroNI GCCGGC 1 cut(s) 527
MscI TGGCCA 2 cut(s) 98, 487
MseI TTAA 2 cut(s) 444, 985
MslI CAYNNNNRTG 2 cut(s) 744, 812
Msp20I TGGCCA 2 cut(s) 98, 487
MspA1I CMGCKG 1 cut(s) 381
MspI CCGG 3 cut(s) 238, 528, 665
MspR9I CCNGG 2 cut(s) 326, 549
MvaI CCWGG 2 cut(s) 326, 549
MwoI GCNNNNNNNGC 4 cut(s) 122, 204, 938, 977
NaeI GCCGGC 1 cut(s) 529
NarI GGCGCC 1 cut(s) 697
NcoI CCATGG 1 cut(s) 252
NdeII GATC 5 cut(s) 358, 447, 568, 755, 955
NgoMIV GCCGGC 1 cut(s) 527
NlaIII CATG 7 cut(s) 256, 376, 426, 499, 535, 569, 634
NlaIV GGNNCC 2 cut(s) 242, 698
NmuCI GTSAC 3 cut(s) 46, 428, 589
NspI RCATGY 3 cut(s) 376, 535, 634
PciI ACATGT 1 cut(s) 630
PdiI GCCGGC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 5 cut(s) 383, 507, 751, 934, 982
PleI GAGTC 2 cut(s) 193, 435
PluTI GGCGCC 1 cut(s) 700
PpsI GAGTC 2 cut(s) 193, 435
Ppu21I YACGTR 1 cut(s) 46
PscI ACATGT 1 cut(s) 630
Psp6I CCWGG 2 cut(s) 324, 547
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 2 cut(s) 324, 547
PspN4I GGNNCC 2 cut(s) 242, 698
PspPI GGNCC 3 cut(s) 103, 240, 920
PstNI CAGNNNCTG 1 cut(s) 947
RsaI GTAC 6 cut(s) 30, 467, 635, 671, 773, 907
RsaNI GTAC 6 cut(s) 29, 466, 634, 670, 772, 906
RseI CAYNNNNRTG 2 cut(s) 744, 812
SaqAI TTAA 2 cut(s) 444, 985
SatI GCNGC 5 cut(s) 382, 506, 750, 933, 981
Sau3AI GATC 5 cut(s) 358, 447, 568, 755, 955
Sau96I GGNCC 3 cut(s) 103, 240, 920
SchI GAGTC 2 cut(s) 194, 436
ScrFI CCNGG 2 cut(s) 326, 549
SduI GDGCHC 3 cut(s) 171, 503, 973
SfaNI GCATC 2 cut(s) 804, 934
SfoI GGCGCC 1 cut(s) 698
SinI GGWCC 2 cut(s) 240, 920
SmiMI CAYNNNNRTG 2 cut(s) 744, 812
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 865
SsiI CCGC 5 cut(s) 59, 162, 381, 506, 752
SspDI GGCGCC 1 cut(s) 696
StyD4I CCNGG 2 cut(s) 324, 547
StyI CCWWGG 2 cut(s) 99, 252
TaaI ACNGT 2 cut(s) 583, 910
TaiI ACGT 1 cut(s) 48
TasI AATT 1 cut(s) 865
TatI WGTACW 2 cut(s) 633, 669
TauI GCSGC 2 cut(s) 384, 508
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 444, 985
Tru9I TTAA 2 cut(s) 444, 985
TscAI CASTG 2 cut(s) 488, 781
TseFI GTSAC 3 cut(s) 46, 428, 589
TseI GCWGC 3 cut(s) 749, 932, 980
Tsp45I GTSAC 3 cut(s) 46, 428, 589
TspDTI ATGAA 4 cut(s) 728, 843, 858, 916
TspGWI ACGGA 2 cut(s) 39, 275
TspRI CASTG 2 cut(s) 488, 781
VneI GTGCAC 1 cut(s) 969
VpaK11BI GGWCC 2 cut(s) 240, 920
XagI CCTNNNNNAGG 1 cut(s) 110
XceI RCATGY 3 cut(s) 376, 535, 634
XmiI GTMKAC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.