FvH4_4g20790

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
23920043 .. 23921743
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20790.t1

Sequence Viewer

Length: 1014 bp
ATGTCTCCTACAGATCTTGCATCCCCTATGTCTCCTACAGATCTGACAAACGGAGTACCAAAGAGGGCATACGTGACCTTCTTGGCGGGCAACGGTGACTATGTGAAAGGTGTGGTTGGTCTGGCCAAGGGACTCAGGAAGGCCAAATCTGCCTACCCTCTTATTGTGGCTGTGTTGCCGGATGTTCCTGAAGAGCACCTTCAGATTCTGGAGTCTCAGGGATGCATTGTGCGCCCGATTGAGCCAGTCTACCCTCCTGAGAGCCAGACCCAGTTTTCCATGGCTTACTATGTCATCAACTACTCAAAGCTTCGTATTTGGGAGTTTGTGGAGTATGAGAAGCTGATATACCTAGATGGAGATATACAAGTGTTTGATAACATTGATCACCTGTTTGACATGCCCAACGGCTACTTTTATGCCGTGATGGATTGCTTTTGTGAGAACACATGGAGTCACTCTCCTCAGTTTAAGATTGGATACTGCCAGCAGTGCCCTGAAAAGGTGCAGTGGCCAGCAGACATGGGCTCGCCGCCACCGCGTTACTTCAACGCCGGCATGTTTGTCTATGAACCTGGTCTTGAAACTTACCATGATCTGTTAGAGACCGTCAAAGTCACCCCTCCTTCCTCATTTGCTGAGCAGGACTTCTTGAACATGTATTTCAAGGACATATACCAGCCTATCCCACCGGTGTACAACCTTGTCTTGGCAATGCTGTGGCGCCACCCTGAAAATGTCGACCTTGACAGGGTGAAGGTTGTTCATTATTGTGCTGCGGGTTCAAAGCCGTGGAGGTACACTGGCAAGGAAGAGCATATGGAGAGGGAAGACATAAAGATGCTGGTGAAGAAATGGTGGGAGATATATGAAGACCCTTCATTGGATTATAACTACAATGACGATGTTATTGTGAAGGCTGAGAATGAGCCTACTGTAAAGCTTGGACCTTTCATTGCTGCATTGGCAGATGCTGGTGTTGATCAGCAGAGAAGTGCACCGTCTGCTGCTTGA

Protein Analysis

338

Amino Acids

38.54

Weight (kDa)

4.81

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 26 - 268 7.5e-46 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 723
AccI GTMKAC 2 cut(s) 249, 741
AccII CGCG 1 cut(s) 541
AciI CCGC 4 cut(s) 86, 533, 539, 779
AcoI YGGCCR 2 cut(s) 123, 512
AcuI CTGAAG 2 cut(s) 185, 210
AcyI GRCGYC 1 cut(s) 724
AfaI GTAC 3 cut(s) 57, 698, 800
AfiI CCNNNNNNNGG 4 cut(s) 502, 709, 751, 883
AflIII ACRYGT 1 cut(s) 657
AgeI ACCGGT 1 cut(s) 691
AgsI TTSAA 5 cut(s) 550, 584, 655, 667, 786
AjnI CCWGG 1 cut(s) 574
AluBI AGCT 3 cut(s) 310, 343, 943
AluI AGCT 3 cut(s) 310, 343, 943
Alw21I GWGCWC 2 cut(s) 198, 1000
Alw26I GTCTC 4 cut(s) 9, 36, 219, 599
Alw44I GTGCAC 1 cut(s) 996
AlwNI CAGNNNCTG 2 cut(s) 208, 974
AoxI GGCC 3 cut(s) 123, 141, 512
ApaLI GTGCAC 1 cut(s) 996
ApeKI GCWGC 3 cut(s) 776, 959, 1007
AsiGI ACCGGT 1 cut(s) 691
AspLEI GCGC 2 cut(s) 234, 726
AspS9I GGNCC 1 cut(s) 947
AsuHPI GGTGA 5 cut(s) 107, 380, 610, 766, 859
AvaII GGWCC 1 cut(s) 947
BaeGI GKGCMC 2 cut(s) 497, 1000
BalI TGGCCA 2 cut(s) 125, 514
BanI GGYRCC 1 cut(s) 723
BanII GRGCYC 1 cut(s) 530
BarI GAAGNNNNNNTAC 2 cut(s) 332, 364
BbsI GAAGAC 2 cut(s) 837, 879
Bbv12I GWGCWC 2 cut(s) 198, 1000
BbvI GCAGC 3 cut(s) 763, 946, 994
BccI CCATC 2 cut(s) 350, 421
BceAI ACGGC 3 cut(s) 407, 424, 775
BciT130I CCWGG 1 cut(s) 576
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 2 cut(s) 385, 982
BcoDI GTCTC 4 cut(s) 9, 36, 219, 599
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 2 cut(s) 9, 36
BfoI RGCGCY 1 cut(s) 727
BfuI GTATCC 1 cut(s) 473
BglII AGATCT 2 cut(s) 13, 40
BisI GCNGC 4 cut(s) 533, 777, 960, 1008
BlpI GCTNAGC 1 cut(s) 639
BlsI GCNGC 4 cut(s) 534, 778, 961, 1009
Bme1390I CCNGG 1 cut(s) 576
Bme18I GGWCC 1 cut(s) 947
BmgT120I GGNCC 1 cut(s) 947
BmiI GGNNCC 1 cut(s) 725
BmrFI CCNGG 1 cut(s) 576
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 4 cut(s) 29, 212, 831, 961
BmuI ACTGGG 1 cut(s) 265
BpiI GAAGAC 2 cut(s) 837, 879
BplI GAGNNNNNCTC 2 cut(s) 445, 477
BpmI CTGGAG 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 639
BsaAI YACGTR 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 724
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 126, 279, 791
BsaWI WCCGGW 1 cut(s) 691
Bsc4I CCNNNNNNNGG 4 cut(s) 502, 709, 751, 883
Bse118I RCCGGY 2 cut(s) 554, 691
Bse1I ACTGG 3 cut(s) 245, 271, 808
Bse3DI GCAATG 2 cut(s) 720, 954
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 3 cut(s) 126, 279, 791
BseGI GGATG 3 cut(s) 20, 187, 227
BseLI CCNNNNNNNGG 4 cut(s) 502, 709, 751, 883
BseMI GCAATG 2 cut(s) 720, 954
BseMII CTCAG 6 cut(s) 148, 230, 249, 479, 630, 912
BseNI ACTGG 3 cut(s) 245, 271, 808
BseRI GAGGAG 1 cut(s) 453
BseSI GKGCMC 2 cut(s) 497, 1000
BseXI GCAGC 3 cut(s) 763, 946, 994
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 3 cut(s) 125, 143, 514
BshNI GGYRCC 1 cut(s) 723
BshTI ACCGGT 1 cut(s) 691
BsiHKAI GWGCWC 2 cut(s) 198, 1000
BsiSI CCGG 3 cut(s) 179, 555, 692
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 4 cut(s) 502, 709, 751, 883
BsmAI GTCTC 4 cut(s) 9, 36, 219, 599
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 3 cut(s) 125, 143, 514
Bso31I GGTCTC 1 cut(s) 599
Bsp1286I GDGCHC 4 cut(s) 198, 497, 530, 1000
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 5 cut(s) 13, 40, 385, 595, 982
Bsp1720I GCTNAGC 1 cut(s) 639
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 4 cut(s) 86, 533, 539, 779
BspANI GGCC 3 cut(s) 125, 143, 514
BspCNI CTCAG 6 cut(s) 147, 229, 250, 478, 631, 913
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 1 cut(s) 725
BspQI GCTCTTC 2 cut(s) 186, 807
BspT107I GGYRCC 1 cut(s) 723
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 720, 954
BsrFI RCCGGY 2 cut(s) 554, 691
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 3 cut(s) 245, 271, 808
BssAI RCCGGY 2 cut(s) 554, 691
BssECI CCNNGG 3 cut(s) 126, 279, 791
BssMI GATC 5 cut(s) 13, 40, 385, 595, 982
BssNI GRCGYC 1 cut(s) 724
BssT1I CCWWGG 2 cut(s) 126, 279
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 4 cut(s) 95, 610, 937, 1002
Bst6I CTCTTC 2 cut(s) 186, 807
BstACI GRCGYC 1 cut(s) 724
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstAUI TGTACA 1 cut(s) 696
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 5 cut(s) 88, 488, 516, 530, 556
BstDEI CTNAG 6 cut(s) 134, 216, 258, 465, 639, 921
BstDSI CCRYGG 2 cut(s) 279, 791
BstF5I GGATG 3 cut(s) 20, 187, 227
BstFNI CGCG 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 727
BstHHI GCGC 2 cut(s) 234, 726
BstKTI GATC 5 cut(s) 16, 43, 388, 598, 985
BstMAI GTCTC 4 cut(s) 9, 36, 219, 599
BstMBI GATC 5 cut(s) 13, 40, 385, 595, 982
BstMWI GCNNNNNNNGC 6 cut(s) 149, 231, 492, 538, 965, 1004
BstNI CCWGG 1 cut(s) 576
BstNSI RCATGY 3 cut(s) 403, 562, 661
BstSCI CCNGG 1 cut(s) 574
BstSFI CTRYAG 2 cut(s) 9, 36
BstSLI GKGCMC 2 cut(s) 497, 1000
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 3 cut(s) 763, 946, 994
BstV2I GAAGAC 2 cut(s) 837, 879
BstX2I RGATCY 2 cut(s) 13, 40
BstYI RGATCY 2 cut(s) 13, 40
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 3 cut(s) 125, 143, 514
BtgI CCRYGG 2 cut(s) 279, 791
BtsCI GGATG 3 cut(s) 20, 187, 227
BtsI GCAGTG 2 cut(s) 497, 515
BtsIMutI CAGTG 3 cut(s) 497, 515, 801
Cac8I GCNNGC 5 cut(s) 88, 488, 516, 530, 556
CaiI CAGNNNCTG 2 cut(s) 208, 974
CfoI GCGC 2 cut(s) 234, 726
Cfr10I RCCGGY 2 cut(s) 554, 691
Cfr13I GGNCC 1 cut(s) 947
CsiI ACCWGGT 1 cut(s) 574
Csp6I GTAC 3 cut(s) 56, 697, 799
CspAI ACCGGT 1 cut(s) 691
CviAII CATG 7 cut(s) 280, 400, 450, 523, 559, 593, 658
CviQI GTAC 3 cut(s) 56, 697, 799
DdeI CTNAG 6 cut(s) 134, 216, 258, 465, 639, 921
DinI GGCGCC 1 cut(s) 725
DpnI GATC 5 cut(s) 15, 42, 387, 597, 984
DpnII GATC 5 cut(s) 13, 40, 385, 595, 982
EaeI YGGCCR 2 cut(s) 123, 512
Eam1104I CTCTTC 2 cut(s) 186, 807
EarI CTCTTC 2 cut(s) 186, 807
Eco130I CCWWGG 2 cut(s) 126, 279
Eco24I GRGCYC 1 cut(s) 530
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 1 cut(s) 947
Eco57I CTGAAG 2 cut(s) 185, 210
EcoRII CCWGG 1 cut(s) 574
EcoT14I CCWWGG 2 cut(s) 126, 279
EcoT22I ATGCAT 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 530
EgeI GGCGCC 1 cut(s) 725
EheI GGCGCC 1 cut(s) 725
ErhI CCWWGG 2 cut(s) 126, 279
FaeI CATG 7 cut(s) 283, 403, 453, 526, 562, 596, 661
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 144
FatI CATG 7 cut(s) 279, 399, 449, 522, 558, 592, 657
FauI CCCGC 2 cut(s) 79, 772
FauNDI CATATG 1 cut(s) 819
FbaI TGATCA 2 cut(s) 385, 982
FblI GTMKAC 2 cut(s) 249, 741
Fnu4HI GCNGC 4 cut(s) 533, 777, 960, 1008
FokI GGATG 3 cut(s) 7, 194, 234
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 4 cut(s) 533, 777, 960, 1008
FspBI CTAG 1 cut(s) 353
GlaI GCGC 2 cut(s) 233, 725
GluI GCNGC 4 cut(s) 533, 777, 960, 1008
GsuI CTGGAG 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 727
HaeIII GGCC 3 cut(s) 125, 143, 514
HapII CCGG 3 cut(s) 179, 555, 692
HhaI GCGC 2 cut(s) 234, 726
Hin1I GRCGYC 1 cut(s) 724
Hin1II CATG 7 cut(s) 283, 403, 453, 526, 562, 596, 661
Hin6I GCGC 2 cut(s) 232, 724
HinP1I GCGC 2 cut(s) 232, 724
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 2 cut(s) 308, 941
HinfI GANTC 4 cut(s) 132, 205, 212, 454
HpaII CCGG 3 cut(s) 179, 555, 692
HphI GGTGA 5 cut(s) 107, 380, 610, 766, 859
Hpy166II GTNNAC 5 cut(s) 250, 697, 742, 801, 998
Hpy188I TCNGA 2 cut(s) 45, 204
Hpy188III TCNNGA 6 cut(s) 136, 188, 209, 257, 581, 652
Hpy8I GTNNAC 5 cut(s) 250, 697, 742, 801, 998
HpyAV CCTTC 7 cut(s) 88, 133, 209, 636, 751, 888, 910
HpyCH4III ACNGT 4 cut(s) 95, 610, 937, 1002
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 5 cut(s) 20, 225, 508, 962, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 231, 492, 538, 965, 1004
HpyF3I CTNAG 6 cut(s) 134, 216, 258, 465, 639, 921
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 724
Hsp92II CATG 7 cut(s) 283, 403, 453, 526, 562, 596, 661
HspAI GCGC 2 cut(s) 232, 724
KasI GGCGCC 1 cut(s) 723
KroI GCCGGC 1 cut(s) 554
KroNI GCCGGC 1 cut(s) 556
Ksp22I TGATCA 2 cut(s) 385, 982
Kzo9I GATC 5 cut(s) 13, 40, 385, 595, 982
LguI GCTCTTC 2 cut(s) 186, 807
Lsp1109I GCAGC 3 cut(s) 763, 946, 994
LweI GCATC 4 cut(s) 29, 212, 831, 961
MabI ACCWGGT 1 cut(s) 574
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 5 cut(s) 73, 95, 455, 542, 616
MalI GATC 5 cut(s) 15, 42, 387, 597, 984
MboI GATC 5 cut(s) 13, 40, 385, 595, 982
MboII GAAGA 5 cut(s) 203, 824, 842, 862, 884
MflI RGATCY 2 cut(s) 13, 40
MhlI GDGCHC 4 cut(s) 198, 497, 530, 1000
MlsI TGGCCA 2 cut(s) 125, 514
MluNI TGGCCA 2 cut(s) 125, 514
Mly113I GGCGCC 1 cut(s) 724
MlyI GAGTC 3 cut(s) 126, 221, 463
MnlI CCTC 8 cut(s) 57, 168, 264, 474, 633, 640, 789, 819
Mox20I TGGCCA 2 cut(s) 125, 514
Mph1103I ATGCAT 1 cut(s) 227
MroNI GCCGGC 1 cut(s) 554
MscI TGGCCA 2 cut(s) 125, 514
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 2 cut(s) 771, 839
Msp20I TGGCCA 2 cut(s) 125, 514
MspI CCGG 3 cut(s) 179, 555, 692
MspR9I CCNGG 1 cut(s) 576
MvaI CCWGG 1 cut(s) 576
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 6 cut(s) 149, 231, 492, 538, 965, 1004
NaeI GCCGGC 1 cut(s) 556
NarI GGCGCC 1 cut(s) 724
NcoI CCATGG 1 cut(s) 279
NdeI CATATG 1 cut(s) 819
NdeII GATC 5 cut(s) 13, 40, 385, 595, 982
NgoMIV GCCGGC 1 cut(s) 554
NlaIII CATG 7 cut(s) 283, 403, 453, 526, 562, 596, 661
NlaIV GGNNCC 1 cut(s) 725
NmuCI GTSAC 4 cut(s) 73, 95, 455, 616
NsiI ATGCAT 1 cut(s) 227
NspI RCATGY 3 cut(s) 403, 562, 661
PciI ACATGT 1 cut(s) 657
PciSI GCTCTTC 2 cut(s) 186, 807
PdiI GCCGGC 1 cut(s) 556
PfeI GAWTC 1 cut(s) 205
PinAI ACCGGT 1 cut(s) 691
PkrI GCNGC 4 cut(s) 534, 778, 961, 1009
PleI GAGTC 3 cut(s) 126, 220, 462
PluTI GGCGCC 1 cut(s) 727
PpsI GAGTC 3 cut(s) 126, 220, 462
Ppu21I YACGTR 1 cut(s) 73
PscI ACATGT 1 cut(s) 657
PsiI TTATAA 1 cut(s) 891
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 1 cut(s) 725
PspPI GGNCC 1 cut(s) 947
PstNI CAGNNNCTG 2 cut(s) 208, 974
PsuI RGATCY 2 cut(s) 13, 40
RsaI GTAC 3 cut(s) 57, 698, 800
RsaNI GTAC 3 cut(s) 56, 697, 799
RseI CAYNNNNRTG 2 cut(s) 771, 839
SalI GTCGAC 1 cut(s) 740
SapI GCTCTTC 2 cut(s) 186, 807
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 4 cut(s) 533, 777, 960, 1008
Sau3AI GATC 5 cut(s) 13, 40, 385, 595, 982
Sau96I GGNCC 1 cut(s) 947
SchI GAGTC 3 cut(s) 126, 221, 463
ScrFI CCNGG 1 cut(s) 576
SduI GDGCHC 4 cut(s) 198, 497, 530, 1000
SexAI ACCWGGT 1 cut(s) 574
SfaNI GCATC 4 cut(s) 29, 212, 831, 961
SfcI CTRYAG 2 cut(s) 9, 36
SfoI GGCGCC 1 cut(s) 725
SgrAI CRCCGGYG 1 cut(s) 691
SinI GGWCC 1 cut(s) 947
SmiMI CAYNNNNRTG 2 cut(s) 771, 839
SsiI CCGC 4 cut(s) 86, 533, 539, 779
SspDI GGCGCC 1 cut(s) 723
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 574
StyI CCWWGG 2 cut(s) 126, 279
TaaI ACNGT 4 cut(s) 95, 610, 937, 1002
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 741
TatI WGTACW 1 cut(s) 696
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 3 cut(s) 497, 515, 808
TseFI GTSAC 4 cut(s) 73, 95, 455, 616
TseI GCWGC 3 cut(s) 776, 959, 1007
Tsp45I GTSAC 4 cut(s) 73, 95, 455, 616
TspDTI ATGAA 5 cut(s) 585, 755, 870, 885, 943
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 3 cut(s) 497, 515, 808
VneI GTGCAC 1 cut(s) 996
VpaK11BI GGWCC 1 cut(s) 947
XceI RCATGY 3 cut(s) 403, 562, 661
XmiI GTMKAC 2 cut(s) 249, 741
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.