Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004131

Physical Location & Seq

Genomic Coordinates Reverse (-)

11519353 .. 11521026

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1147500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGGAAGCGAAGGGAGTGGTGAAGCATGTAGTGCTAGCAAAGTTCAAAGACGGAATCGCAGAGAATAAGATCGAAGAAATCATCAAAGGTTTCGCCAACCTCGTCAACCTCATCGAACCCATGAAATCTTTCAACTGTGAAGAGCAATATCTCTCCGGGGACGTAGGCAGGATTTTGCCGAACCTCGTAAATTTCTCGGTGGGAAAGGACGTGAGCTCTGAGAACCTGCATCAAGGTTTCACTCATATCTTTGAGTCGACCTTTGAGAGCACAGAGGGTGTTGCAGAGTACGTAGCTCATCCTGCTCATGTTGACTTTGCAAATTTGTTCCTTTCACATTTGGAGAAAGTCATTGTGATCGATTACAAACCAACTGCAGTAAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0016020 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

131

Amino Acids

14.42

Weight (kDa)

5.14

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	8 - 50	8.7e-08	Stress responsive A/B Barrel Domain
Dabb	PF07876	60 - 124	4.5e-18	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17210 AT3G17210
fragaria_vesca	FvH4_4g20800 FvH4_4g20800
malus_domestica	MD13G1147600.v1.1 MD16G1147500.v1.1
prunus_persica	Prupe.1G111200_v2.0.a1 Prupe.1G111200_v2.0.a1
pyrus_communis	pycom13g12710 pycom16g12590
rosa_chinensis	RchiOBHm_Chr1g0339351 RchiOBHm_Chr4g0426271
rosa_laevigata	RLG00000007306 RLG00000029227
rosa_multiflora	Rmu_sc0000613.1_g000003 Rmu_sc0000730.1_g000036 Rmu_sc0002989.1_g000002 Rmu_sc0020679.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313430 Rroxscaffold_5G00368300
rosa_rugosa	Rorug01G0142500.1 Rorug04G0209900
rosa_samantha	Rh1AG159200 Rh1BG126300 Rh1CG148400 Rh4AG266900 Rh4BG272800 Rh4CG286800 Rh4DG269200 Rh4DG269400
rosa_wichuraiana	Rw1G013560 Rw4G023070 Rw4G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	193, 325
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	49, 136
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	2 cut(s)	219, 299
AluI	AGCT	2 cut(s)	219, 299
Alw21I	GWGCWC	2 cut(s)	221, 275
ApoI	RAATTY	2 cut(s)	193, 325
Asp700I	GAANNNNTTC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	34
AsuNHI	GCTAGC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	221, 275
BcnI	CCSGG	1 cut(s)	160
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	241
BmtI	GCTAGC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	160
Bsa29I	ATCGAT	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	159
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	363
BsiHKAI	GWGCWC	2 cut(s)	221, 275
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	221, 275
Bsp143I	GATC	2 cut(s)	72, 360
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	237
BspOI	GCTAGC	1 cut(s)	41
BspQI	GCTCTTC	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	72, 360
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	2 cut(s)	75, 363
BstMBI	GATC	2 cut(s)	72, 360
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 305
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	378
BstSNI	TACGTA	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	363
BsuTUI	ATCGAT	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	301
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	29, 124, 311
CviJI	RGCY	2 cut(s)	219, 299
CviKI_1	RGCY	2 cut(s)	219, 299
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	74, 362
DpnII	GATC	2 cut(s)	72, 360
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	219
Eco105I	TACGTA	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	3 cut(s)	32, 127, 314
FaiI	YATR	4 cut(s)	30, 125, 249, 312
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	28, 123, 310
FblI	GTMKAC	1 cut(s)	260
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	38
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	3 cut(s)	32, 127, 314
HincII	GTYRAC	3 cut(s)	109, 261, 316
HindII	GTYRAC	3 cut(s)	109, 261, 316
HinfI	GANTC	2 cut(s)	57, 257
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	3 cut(s)	109, 261, 316
Hpy188I	TCNGA	1 cut(s)	223
Hpy8I	GTNNAC	3 cut(s)	109, 261, 316
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	3 cut(s)	165, 213, 294
HpyCH4V	TGCA	4 cut(s)	232, 287, 323, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 305
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	3 cut(s)	165, 213, 294
Hsp92II	CATG	3 cut(s)	32, 127, 314
Kzo9I	GATC	2 cut(s)	72, 360
LguI	GCTCTTC	1 cut(s)	138
LpnPI	CCDG	4 cut(s)	157, 172, 242, 318
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	3 cut(s)	165, 213, 294
MalI	GATC	2 cut(s)	74, 362
MboI	GATC	2 cut(s)	72, 360
MboII	GAAGA	2 cut(s)	89, 155
MhlI	GDGCHC	2 cut(s)	221, 275
MluCI	AATT	2 cut(s)	193, 325
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	4 cut(s)	113, 122, 197, 271
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	1 cut(s)	391
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	34, 305
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	2 cut(s)	72, 360
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	3 cut(s)	32, 127, 314
NspI	RCATGY	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	221
SalI	GTCGAC	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	391
Sau3AI	GATC	2 cut(s)	72, 360
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	221, 275
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	295
Sse9I	AATT	2 cut(s)	193, 325
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	3 cut(s)	168, 216, 297
TaqI	TCGA	4 cut(s)	75, 117, 260, 363
TasI	AATT	2 cut(s)	193, 325
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	391
Tru9I	TTAA	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	69
XapI	RAATTY	2 cut(s)	193, 325
XceI	RCATGY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.