Rh4AG266900

Probable protein Pop3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004131
Physical Location & Seq
Forward (+)
58319743 .. 58320997
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG266900.1

Sequence Viewer

Length: 330 bp
ATGGAGGAAGCAAAGGGAGTGGTGAAGCATGTATTGCTAGCCAAGTTCAAAGAAGGAGTCTCTGAGTCTCAGATTGACCAACTCATCAAAGGCTATGCCAACCTCGTCAATCTCATTGATCCCATGGAGTCCTTCCACTGGGGAAAGGACGTGAGCATTGAGAACCTGCATCAAGGTTTCACTCATATCTTCGAGTCCAGCTTTAAGAGTACTGAGGCTGTTGCGGAGTATGTAGCTCATCCTGCCCATGTTGATTTCGCTAACTTGTTCCTCTCCCATTTGGAGAAAGTCCTTGTGTTTGATTACAAACCCACTACAGTTTGTGTCTGA

Protein Analysis

109

Amino Acids

12.29

Weight (kDa)

5.54

Isoelectric Point (pI)

23.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 8 - 103 2.8e-29 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 113
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 151
AluBI AGCT 2 cut(s) 201, 236
AluI AGCT 2 cut(s) 201, 236
Alw26I GTCTC 2 cut(s) 64, 72
AlwI GGATC 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AsuHPI GGTGA 1 cut(s) 34
AsuNHI GCTAGC 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 64, 72
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 174
BmcAI AGTACT 1 cut(s) 211
BmgBI CACGTC 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 178
BmtI GCTAGC 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 3 cut(s) 54, 83, 204
BseNI ACTGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 64, 72
Bsp143I GATC 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 3 cut(s) 55, 82, 205
BspMI ACCTGC 1 cut(s) 174
BspOI GCTAGC 1 cut(s) 41
BspPI GGATC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 63, 69, 213
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 2 cut(s) 64, 72
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 34, 242
BstNSI RCATGY 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 210
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 3 cut(s) 29, 124, 248
CviJI RGCY 5 cut(s) 41, 93, 201, 218, 236
CviKI_1 RGCY 5 cut(s) 41, 93, 201, 218, 236
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 3 cut(s) 63, 69, 213
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 3 cut(s) 32, 127, 251
FaiI YATR 6 cut(s) 30, 96, 125, 186, 231, 249
FatI CATG 3 cut(s) 28, 123, 247
FokI GGATG 1 cut(s) 225
FspBI CTAG 1 cut(s) 38
Hin1II CATG 3 cut(s) 32, 127, 251
HinfI GANTC 4 cut(s) 57, 65, 128, 194
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 64, 72, 329
HpyAV CCTTC 2 cut(s) 47, 142
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 242
HpyF3I CTNAG 3 cut(s) 63, 69, 213
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 3 cut(s) 32, 127, 251
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 124, 179, 211, 255
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 150
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 181
MlyI GAGTC 4 cut(s) 66, 74, 137, 203
MnlI CCTC 3 cut(s) 113, 208, 281
MseI TTAA 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 34, 242
NcoI CCATGG 1 cut(s) 123
NdeII GATC 1 cut(s) 118
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 3 cut(s) 32, 127, 251
NspI RCATGY 1 cut(s) 32
PleI GAGTC 4 cut(s) 65, 73, 136, 202
PpsI GAGTC 4 cut(s) 65, 73, 136, 202
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 1 cut(s) 118
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 4 cut(s) 66, 74, 137, 203
SetI ASST 6 cut(s) 105, 153, 168, 178, 203, 238
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 315
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 192
TatI WGTACW 1 cut(s) 209
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 143
TspRI CASTG 1 cut(s) 143
XceI RCATGY 1 cut(s) 32
XspI CTAG 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.