Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004131

Physical Location & Seq

Genomic Coordinates Reverse (-)

8903159 .. 8905794

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTTGTCATGACATGCATTATGTCGACAATTCGCGACGCTTTTCATGTCGTGGCCAACAACGATGTTCTAGTGTGCCACGATGCAAGGGTTACCGTGTCAAGAGAAGTCATGCCAAACGTGCAAAAAGTCAACAAAACACATGCCATGACATGTCATCGCATGCCAACATCGGTGTTCTAGCAGTGGTGAAGCATATACGACGTTTGGTGGAGAGCGAGGGAGTCGTGAGGCATATACGAAGTTTGGTGGAGGGAGAGAGAGAGAGAGAGATGGAGGAAGCACAGGGATTGGTGAAGCATGTACTGCTGGCAAAGTTCAAAGACGGGATCTCAGAAAGCAAGATCGAAGAACTCATCAAAGGTTACACCAACCTCGTCAATCTCATCGAACCCATGAAGTCTTTCAACTGGGGAAAAGACGTGAGCTTCGAGAACCTACATCAAGGTTTCACTCATGTCTTTGAGTCAACCTTTGAGAGTACGGAGGGTGTCGCAGAATACGTAGCCCATCCTGCCCACGTTGACTTTGCAAATTTGTTCCTTTCCAATTTGGAGAAGGTCATTGTGATCGACTACAAACCAACTACTGTTCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0016020 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

201

Amino Acids

22.86

Weight (kDa)

8.58

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	99 - 194	1.9e-29	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17210 AT3G17210
fragaria_vesca	FvH4_4g20800 FvH4_4g20800
malus_domestica	MD13G1147600.v1.1 MD16G1147500.v1.1
prunus_persica	Prupe.1G111200_v2.0.a1 Prupe.1G111200_v2.0.a1
pyrus_communis	pycom13g12710 pycom16g12590
rosa_chinensis	RchiOBHm_Chr1g0339351 RchiOBHm_Chr4g0426271
rosa_laevigata	RLG00000007306 RLG00000029227
rosa_multiflora	Rmu_sc0000613.1_g000003 Rmu_sc0000730.1_g000036 Rmu_sc0002989.1_g000002 Rmu_sc0020679.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313430 Rroxscaffold_5G00368300
rosa_rugosa	Rorug01G0142500.1 Rorug04G0209900
rosa_samantha	Rh1AG159200 Rh1BG126300 Rh1CG148400 Rh4AG266900 Rh4BG272800 Rh4CG286800 Rh4DG269200 Rh4DG269400
rosa_wichuraiana	Rw1G013560 Rw4G023070 Rw4G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	37
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	535
AfaI	GTAC	2 cut(s)	306, 484
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	322, 409
AjiI	CACGTC	1 cut(s)	424
AluBI	AGCT	1 cut(s)	429
AluI	AGCT	1 cut(s)	429
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	535
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
Asp700I	GAANNNNTTC	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	202, 307
BalI	TGGCCA	1 cut(s)	57
BccI	CCATC	2 cut(s)	268, 519
BfaI	CTAG	2 cut(s)	72, 182
BmgBI	CACGTC	1 cut(s)	424
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	74
BmuI	ACTGGG	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	416
BseGI	GGATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	330, 345, 570
Bsp68I	TCGCGA	1 cut(s)	37
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	10
BspPI	GGATC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	416
BssMI	GATC	3 cut(s)	330, 345, 570
Bst4CI	ACNGT	2 cut(s)	98, 592
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	165, 312
BstDEI	CTNAG	1 cut(s)	334
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	3 cut(s)	333, 348, 573
BstMBI	GATC	3 cut(s)	330, 345, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 307, 515
BstNSI	RCATGY	5 cut(s)	19, 147, 157, 167, 305
BstPI	GGTNACC	1 cut(s)	92
BstSNI	TACGTA	1 cut(s)	505
BstUI	CGCG	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
BtuMI	TCGCGA	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	165, 312
CciI	TCATGA	1 cut(s)	10
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	305, 483
CviJI	RGCY	4 cut(s)	5, 57, 429, 509
CviKI_1	RGCY	4 cut(s)	5, 57, 429, 509
CviQI	GTAC	2 cut(s)	305, 483
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	3 cut(s)	332, 347, 572
DpnII	GATC	3 cut(s)	330, 345, 570
EaeI	YGGCCR	1 cut(s)	55
Eco105I	TACGTA	1 cut(s)	505
Eco91I	GGTNACC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	1 cut(s)	498
FspBI	CTAG	2 cut(s)	72, 182
HaeIII	GGCC	1 cut(s)	57
HgaI	GACGC	1 cut(s)	48
HincII	GTYRAC	4 cut(s)	28, 134, 471, 526
HindII	GTYRAC	4 cut(s)	28, 134, 471, 526
HinfI	GANTC	2 cut(s)	225, 467
HphI	GGTGA	2 cut(s)	202, 307
Hpy166II	GTNNAC	4 cut(s)	28, 134, 471, 526
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	5 cut(s)	11, 36, 103, 229, 433
Hpy8I	GTNNAC	4 cut(s)	28, 134, 471, 526
Hpy99I	CGWCG	2 cut(s)	42, 207
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	2 cut(s)	98, 592
HpyCH4IV	ACGT	5 cut(s)	121, 205, 423, 504, 522
HpyCH4V	TGCA	4 cut(s)	19, 87, 125, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 307, 515
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	5 cut(s)	121, 205, 423, 504, 522
Kzo9I	GATC	3 cut(s)	330, 345, 570
LpnPI	CCDG	4 cut(s)	272, 296, 397, 528
LweI	GCATC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	72, 182
MaeII	ACGT	5 cut(s)	121, 205, 423, 504, 522
MaeIII	GTNAC	2 cut(s)	92, 365
MalI	GATC	3 cut(s)	332, 347, 572
MboI	GATC	3 cut(s)	330, 345, 570
MboII	GAAGA	1 cut(s)	362
MflI	RGATCY	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	3 cut(s)	31, 535, 550
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	234, 476
MnlI	CCTC	6 cut(s)	214, 225, 247, 271, 386, 481
Mox20I	TGGCCA	1 cut(s)	57
Mph1103I	ATGCAT	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	1 cut(s)	601
Msp20I	TGGCCA	1 cut(s)	57
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	122, 307, 515
NdeII	GATC	3 cut(s)	330, 345, 570
NruI	TCGCGA	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	5 cut(s)	19, 147, 157, 167, 305
PaeI	GCATGC	1 cut(s)	167
PagI	TCATGA	1 cut(s)	10
PciI	ACATGT	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	2 cut(s)	429, 501
PdmI	GAANNNNTTC	1 cut(s)	404
PleI	GAGTC	2 cut(s)	233, 475
PpsI	GAGTC	2 cut(s)	233, 475
Ppu21I	YACGTR	1 cut(s)	505
PscI	ACATGT	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	330
RruI	TCGCGA	1 cut(s)	37
RsaI	GTAC	2 cut(s)	306, 484
RsaNI	GTAC	2 cut(s)	305, 483
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	601
Sau3AI	GATC	3 cut(s)	330, 345, 570
SchI	GAGTC	2 cut(s)	234, 476
SfaNI	GCATC	1 cut(s)	74
SnaBI	TACGTA	1 cut(s)	505
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	3 cut(s)	31, 535, 550
SspMI	CTAG	2 cut(s)	72, 182
TaaI	ACNGT	2 cut(s)	98, 592
TaiI	ACGT	5 cut(s)	124, 208, 426, 507, 525
TaqI	TCGA	5 cut(s)	27, 348, 390, 432, 573
TasI	AATT	3 cut(s)	31, 535, 550
TatI	WGTACW	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	601
Tru9I	TTAA	1 cut(s)	601
TscAI	CASTG	1 cut(s)	192
TspDTI	ATGAA	3 cut(s)	36, 413, 584
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	192
XapI	RAATTY	1 cut(s)	535
XceI	RCATGY	5 cut(s)	19, 147, 157, 167, 305
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	2 cut(s)	72, 182
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.