Rroxscaffold_4G00313430

Probable protein Pop3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004131
Physical Location & Seq
Forward (+)
36942201 .. 36945393
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00313430.1

Sequence Viewer

Length: 330 bp
ATGGAGGAAGCGAAGGGAGTGGTGAAGCATGTATTGTTAGCCAAGTTCAAGGAAGGTGTGACTGAGTCGGAGATTGAGCAACTCATCAAAGGCTTTGCCAACCTCGTCAATCTCATTGATACCATGGAGTCCTTCCACTGGGGAAAGGACGTGAGCATTGAGAACCTGCATCAAGGTTTCACTCATATCTTTGAGTCCAGCTTTAAGAGTACTGAGGCTGTTGCGGAGTATCTAGCTCATCCTGCCCATGTTGATTTTGCAAACTTGTTCCGTCCCCATGTGGAGAAAGTCCTTGTGTTTGATTACAAACCCACTACAGTTCGTGTCTGA

Protein Analysis

109

Amino Acids

12.41

Weight (kDa)

5.75

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 8 - 103 5.7e-31 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AciI CCGC 1 cut(s) 224
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 151
AluBI AGCT 2 cut(s) 201, 236
AluI AGCT 2 cut(s) 201, 236
AsuHPI GGTGA 1 cut(s) 34
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 174
BmcAI AGTACT 1 cut(s) 211
BmgBI CACGTC 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 54, 204
BseNI ACTGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 258
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 55, 205
BspMI ACCTGC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 319
BstDEI CTNAG 2 cut(s) 63, 213
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 210
CviAII CATG 4 cut(s) 29, 124, 248, 278
CviJI RGCY 5 cut(s) 41, 93, 201, 218, 236
CviKI_1 RGCY 5 cut(s) 41, 93, 201, 218, 236
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 63, 213
Eco130I CCWWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 4 cut(s) 32, 127, 251, 281
FaiI YATR 5 cut(s) 30, 125, 186, 249, 279
FaqI GGGAC 1 cut(s) 258
FatI CATG 4 cut(s) 28, 123, 247, 277
FokI GGATG 1 cut(s) 225
FspBI CTAG 1 cut(s) 233
Hin1II CATG 4 cut(s) 32, 127, 251, 281
HinfI GANTC 3 cut(s) 65, 128, 194
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 70, 329
HpyAV CCTTC 3 cut(s) 7, 47, 142
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 169, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 63, 213
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 4 cut(s) 32, 127, 251, 281
LpnPI CCDG 4 cut(s) 124, 179, 211, 255
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 58
MlyI GAGTC 3 cut(s) 74, 137, 203
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 2 cut(s) 113, 208
MseI TTAA 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 123
NlaIII CATG 4 cut(s) 32, 127, 251, 281
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 32
PflFI GACNNNGTC 1 cut(s) 64
PleI GAGTC 3 cut(s) 73, 136, 202
PpsI GAGTC 3 cut(s) 73, 136, 202
PsyI GACNNNGTC 1 cut(s) 64
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 204
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 3 cut(s) 74, 137, 203
SetI ASST 7 cut(s) 58, 105, 153, 168, 178, 203, 238
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 315
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 153
TatI WGTACW 1 cut(s) 209
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 143
Tth111I GACNNNGTC 1 cut(s) 64
XceI RCATGY 1 cut(s) 32
XspI CTAG 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.