Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004131

Physical Location & Seq

Genomic Coordinates Reverse (-)

8863895 .. 8865431

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAGACCAAATCTGCATACCTTCACTCTCAAGGATCATTGTTTATGCAATTTAACCTGTCTAGTAATGTGAGTCCACACAATCACACGACACGTCGTTTTCTTTTCAATACATGTACAATACAATACGAGGTTTGGCGAGAGAGAGAGAGAGAGAGAGAGATGGAGGAAGCAAAGGGAGTGGTGATGCATGTAGTGCTAGCAAAGTTCAAAGACGGAATCGCAGAGAATAAGATCGAAGAAATCATCAAAGATTTCGCCAACCTCGTCAACCTCATCGAACCCATGAAATCTTTCAACTGGGGAAAGGACGTGAGCTCTGAGAACCTGAATCAAGGTTTCACTCATATCTTTGAGTGGACCTTTGAGAGCACGGAGGGTGTTGCAGAGTACGTGTACGTAGCTCATCCTGCCCATGTTGACTTCGCAAATTTGTTCCTTTCACATGTGGAGAAAGTCCTTGTGATCGATTACAAACCAACGGCAGTAAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0016020 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

166

Amino Acids

19.13

Weight (kDa)

5.89

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17210 AT3G17210
fragaria_vesca	FvH4_4g20800 FvH4_4g20800
malus_domestica	MD13G1147600.v1.1 MD16G1147500.v1.1
prunus_persica	Prupe.1G111200_v2.0.a1 Prupe.1G111200_v2.0.a1
pyrus_communis	pycom13g12710 pycom16g12590
rosa_chinensis	RchiOBHm_Chr1g0339351 RchiOBHm_Chr4g0426271
rosa_laevigata	RLG00000007306 RLG00000029227
rosa_multiflora	Rmu_sc0000613.1_g000003 Rmu_sc0000730.1_g000036 Rmu_sc0002989.1_g000002 Rmu_sc0020679.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313430 Rroxscaffold_5G00368300
rosa_rugosa	Rorug01G0142500.1 Rorug04G0209900
rosa_samantha	Rh1AG159200 Rh1BG126300 Rh1CG148400 Rh4AG266900 Rh4BG272800 Rh4CG286800 Rh4DG269200 Rh4DG269400
rosa_wichuraiana	Rw1G013560 Rw4G023070 Rw4G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	430
AfaI	GTAC	3 cut(s)	118, 392, 398
AflIII	ACRYGT	4 cut(s)	92, 113, 393, 445
AgsI	TTSAA	3 cut(s)	109, 211, 298
AjiI	CACGTC	2 cut(s)	95, 313
AluBI	AGCT	2 cut(s)	318, 404
AluI	AGCT	2 cut(s)	318, 404
Alw21I	GWGCWC	2 cut(s)	320, 374
AlwI	GGATC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	196
AsuNHI	GCTAGC	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	320, 374
BccI	CCATC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	63, 200
Bme18I	GGWCC	1 cut(s)	360
BmgBI	CACGTC	2 cut(s)	95, 313
BmgT120I	GGNCC	1 cut(s)	360
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	177
BmtI	GCTAGC	1 cut(s)	203
BmuI	ACTGGG	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	15
Bsa29I	ATCGAT	1 cut(s)	468
BsaAI	YACGTR	2 cut(s)	394, 400
Bse1I	ACTGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	468
BseGI	GGATG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	2 cut(s)	320, 374
Bsp1286I	GDGCHC	2 cut(s)	320, 374
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	35, 234, 465
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	468
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	305
BssMI	GATC	3 cut(s)	35, 234, 465
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstAUI	TGTACA	1 cut(s)	116
BstBAI	YACGTR	2 cut(s)	394, 400
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	3 cut(s)	38, 237, 468
BstMBI	GATC	3 cut(s)	35, 234, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 410
BstNSI	RCATGY	3 cut(s)	117, 194, 449
BstSNI	TACGTA	1 cut(s)	400
BstV2I	GAAGAC	1 cut(s)	11
Bsu15I	ATCGAT	1 cut(s)	468
BsuTUI	ATCGAT	1 cut(s)	468
BtrI	CACGTC	2 cut(s)	95, 313
BtsCI	GGATG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	117, 391, 397
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	5 cut(s)	114, 191, 286, 416, 446
CviJI	RGCY	2 cut(s)	318, 404
CviKI_1	RGCY	2 cut(s)	318, 404
CviQI	GTAC	3 cut(s)	117, 391, 397
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	37, 236, 467
DpnII	GATC	3 cut(s)	35, 234, 465
Ecl136II	GAGCTC	1 cut(s)	318
Eco105I	TACGTA	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	320
FaeI	CATG	5 cut(s)	117, 194, 289, 419, 449
FaiI	YATR	8 cut(s)	19, 47, 115, 192, 287, 348, 417, 447
FatI	CATG	5 cut(s)	113, 190, 285, 415, 445
FokI	GGATG	1 cut(s)	393
FriOI	GRGCYC	1 cut(s)	320
FspBI	CTAG	2 cut(s)	63, 200
Hin1II	CATG	5 cut(s)	117, 194, 289, 419, 449
HincII	GTYRAC	2 cut(s)	271, 421
HindII	GTYRAC	2 cut(s)	271, 421
HinfI	GANTC	3 cut(s)	73, 219, 331
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	5 cut(s)	77, 271, 360, 397, 421
Hpy188I	TCNGA	1 cut(s)	322
Hpy8I	GTNNAC	5 cut(s)	77, 271, 360, 397, 421
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	32
HpyCH4IV	ACGT	4 cut(s)	94, 312, 393, 399
HpyCH4V	TGCA	4 cut(s)	17, 49, 190, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 410
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	4 cut(s)	94, 312, 393, 399
Hsp92II	CATG	5 cut(s)	117, 194, 289, 419, 449
Kzo9I	GATC	3 cut(s)	35, 234, 465
LpnPI	CCDG	4 cut(s)	71, 286, 341, 423
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	2 cut(s)	63, 200
MaeII	ACGT	4 cut(s)	94, 312, 393, 399
MalI	GATC	3 cut(s)	37, 236, 467
MboI	GATC	3 cut(s)	35, 234, 465
MboII	GAAGA	2 cut(s)	16, 251
MhlI	GDGCHC	2 cut(s)	320, 374
MluCI	AATT	2 cut(s)	50, 430
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	124, 160, 275, 284, 370
Mph1103I	ATGCAT	1 cut(s)	192
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	2 cut(s)	54, 496
MwoI	GCNNNNNNNGC	2 cut(s)	196, 410
NdeII	GATC	3 cut(s)	35, 234, 465
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	117, 194, 289, 419, 449
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	3 cut(s)	117, 194, 449
PciI	ACATGT	2 cut(s)	113, 445
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	219, 331
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Ppu21I	YACGTR	2 cut(s)	394, 400
PscI	ACATGT	2 cut(s)	113, 445
Psp124BI	GAGCTC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	360
RsaI	GTAC	3 cut(s)	118, 392, 398
RsaNI	GTAC	3 cut(s)	117, 391, 397
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	54, 496
Sau3AI	GATC	3 cut(s)	35, 234, 465
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	320, 374
SfaNI	GCATC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
SnaBI	TACGTA	1 cut(s)	400
Sse9I	AATT	2 cut(s)	50, 430
SspMI	CTAG	2 cut(s)	63, 200
SstI	GAGCTC	1 cut(s)	320
TaiI	ACGT	4 cut(s)	97, 315, 396, 402
TaqI	TCGA	3 cut(s)	237, 279, 468
TasI	AATT	2 cut(s)	50, 430
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	219, 331
Tru1I	TTAA	2 cut(s)	54, 496
Tru9I	TTAA	2 cut(s)	54, 496
TspDTI	ATGAA	2 cut(s)	17, 302
TspGWI	ACGGA	2 cut(s)	231, 389
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	3 cut(s)	117, 194, 449
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	2 cut(s)	63, 200
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.