Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004131

Physical Location & Seq

Genomic Coordinates Reverse (-)

11538698 .. 11540811

Gene Structure 2114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1147600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAGGAAGCAAAGGGATTGGTGAAGCATGTACTGCTGGCAAAGTTTAAGGACGGAATCTCAGAAAGTAAGATCGAAGAACTCATCAAAGGTTATGCCAACCTCGTCAATCTCATCGAACCCATGAAGTCTTTCAACTGGGGAAAGGACGTGAGCTTTGAGAACCTGCATCAAGGTTTCACTCATGTCTTTGAGTCAACCTTTGAGAGTACGGAGGGTGTCGCAGAGTACGTAGCCCATCCTGCCCACGTTGACTTTGCAAATTTGCTCCTTTCCAATTTGGAGAAGGTCATTGTGATCGATTACAAACCAACTACAGTTCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0016020 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

110

Amino Acids

12.27

Weight (kDa)

5.42

Isoelectric Point (pI)

23.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	8 - 103	7.8e-30	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17210 AT3G17210
fragaria_vesca	FvH4_4g20800 FvH4_4g20800
malus_domestica	MD13G1147600.v1.1 MD16G1147500.v1.1
prunus_persica	Prupe.1G111200_v2.0.a1 Prupe.1G111200_v2.0.a1
pyrus_communis	pycom13g12710 pycom16g12590
rosa_chinensis	RchiOBHm_Chr1g0339351 RchiOBHm_Chr4g0426271
rosa_laevigata	RLG00000007306 RLG00000029227
rosa_multiflora	Rmu_sc0000613.1_g000003 Rmu_sc0000730.1_g000036 Rmu_sc0002989.1_g000002 Rmu_sc0020679.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313430 Rroxscaffold_5G00368300
rosa_rugosa	Rorug01G0142500.1 Rorug04G0209900
rosa_samantha	Rh1AG159200 Rh1BG126300 Rh1CG148400 Rh4AG266900 Rh4BG272800 Rh4CG286800 Rh4DG269200 Rh4DG269400
rosa_wichuraiana	Rw1G013560 Rw4G023070 Rw4G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	3 cut(s)	33, 211, 230
AgsI	TTSAA	1 cut(s)	136
AjiI	CACGTC	1 cut(s)	151
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	262
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	34
BccI	CCATC	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	174
BmgBI	CACGTC	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	148
Bsa29I	ATCGAT	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	143
BseCI	ATCGAT	1 cut(s)	300
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	72, 297
BspCNI	CTCAG	1 cut(s)	74
BspDI	ATCGAT	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	143
BssMI	GATC	2 cut(s)	72, 297
Bst4CI	ACNGT	1 cut(s)	319
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	2 cut(s)	75, 300
BstMBI	GATC	2 cut(s)	72, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 242
BstNSI	RCATGY	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	315
BstSNI	TACGTA	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	3 cut(s)	32, 210, 229
CviAII	CATG	4 cut(s)	29, 124, 185, 323
CviJI	RGCY	2 cut(s)	156, 236
CviKI_1	RGCY	2 cut(s)	156, 236
CviQI	GTAC	3 cut(s)	32, 210, 229
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	2 cut(s)	74, 299
DpnII	GATC	2 cut(s)	72, 297
Eco105I	TACGTA	1 cut(s)	232
FaeI	CATG	4 cut(s)	32, 127, 188, 326
FaiI	YATR	5 cut(s)	30, 96, 125, 186, 324
FatI	CATG	4 cut(s)	28, 123, 184, 322
FokI	GGATG	1 cut(s)	225
Hin1II	CATG	4 cut(s)	32, 127, 188, 326
HincII	GTYRAC	2 cut(s)	198, 253
HindII	GTYRAC	2 cut(s)	198, 253
HinfI	GANTC	2 cut(s)	57, 194
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	198, 253
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	198, 253
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	3 cut(s)	150, 231, 249
HpyCH4V	TGCA	2 cut(s)	169, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 242
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	3 cut(s)	150, 231, 249
Hsp92II	CATG	4 cut(s)	32, 127, 188, 326
Kzo9I	GATC	2 cut(s)	72, 297
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	4 cut(s)	23, 124, 179, 255
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	3 cut(s)	150, 231, 249
MalI	GATC	2 cut(s)	74, 299
MboI	GATC	2 cut(s)	72, 297
MboII	GAAGA	1 cut(s)	89
MluCI	AATT	2 cut(s)	262, 277
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	2 cut(s)	113, 208
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	2 cut(s)	48, 328
MwoI	GCNNNNNNNGC	2 cut(s)	34, 242
NdeII	GATC	2 cut(s)	72, 297
NlaIII	CATG	4 cut(s)	32, 127, 188, 326
NspI	RCATGY	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	232
RsaI	GTAC	3 cut(s)	33, 211, 230
RsaNI	GTAC	3 cut(s)	32, 210, 229
SaqAI	TTAA	2 cut(s)	48, 328
Sau3AI	GATC	2 cut(s)	72, 297
SchI	GAGTC	1 cut(s)	203
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	315
SnaBI	TACGTA	1 cut(s)	232
Sse9I	AATT	2 cut(s)	262, 277
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	3 cut(s)	153, 234, 252
TaqI	TCGA	3 cut(s)	75, 117, 300
TasI	AATT	2 cut(s)	262, 277
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	48, 328
Tru9I	TTAA	2 cut(s)	48, 328
TspDTI	ATGAA	2 cut(s)	140, 311
TspGWI	ACGGA	2 cut(s)	69, 227
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.