Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015159

Physical Location & Seq

Genomic Coordinates Reverse (-)

6318409 .. 6320712

Gene Structure 2304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAGAAAATCTTCCTCCGGGGTTCAGATTTCATCCTACAGACGAGGAGCTCATAACGCATTATCTATGTCGGAAAGTCTCCGATATAGGATTCACCGGTAAAGCTGTCGTCGACGTTGATCTCAACAAGTGTGAACCTTGGGATTTGCCAGCCAAGGCTTCAATGGGAGAGAAAGAGTGGTATTTCTTCAGCCAAAGGGATCGGAAATATCCAACCGGTTTAAGAACAAACCGGGCAACAGAAGCTGGTTACTGGAAAACCACCGGGAAAGATAAAGAAATATACCGAAGTGGAGTGTTGGTTGGGATGAAGAAAACCCTAGTTTTCTACAAAGGAAGAGCTCCCAAAGGTGAGAAAAGCAATTGGGTTATGCATGAGTACAGGCTTGAGAGCAAACAACCTTTCAACCCCACGAATAAGGAGGAATGGGTAGTGTGTAGGGTTTTCGAAAAGAGCACGGCAGCAAAGAAAGCACAAGAACAACAACCTCAATCTTCTCAACCATCTTTTGGATCTCCATGCGATGCAAACTCATCAATGGCAAATGAGTTTGAAGATATTGATGAGCTTCCGAATCTGAATTCAAACTCATCAACCATCGATTACAATAATCATATCCATCAATATTCGCAACGCAATGTTTACTCAGAAGACAACACAACAAGTACGGCTGGTCTCAACATGAACATGAACATGGCTAGTACTAATCTTCAGTCTTGGACAACAAGTCTCCTTGGTCCGCCTTTATCTCCAATCAACTCTTTGTTGCTCAAGGCTTTCCAAATCAGGAACTCTTATAGTTTCCCAAAAGAGATGATCCCCAGTTTCAATCATTCTTCTCTTCAACAAGGAGTCTCCAATATGATCCAAAATGCTTCAAGTTCGTCTCAAGTGCAACCCCAACCGCAAGAGGAAGCGTTTAATATGGACTCCATATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090691 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

314

Amino Acids

35.74

Weight (kDa)

6.12

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	6 - 130	7.9e-49	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18400
fragaria_vesca	FvH4_5g12090
malus_domestica	MD06G1216500.v1.1 MD14G1226900.v1.1
prunus_persica	Prupe.5G221600_v2.0.a1
pyrus_communis	pycom06g19290 pycom14g18830
rosa_chinensis	RchiOBHm_Chr7g0185481
rosa_laevigata	RLG00000004909
rosa_multiflora	Rmu_sc0010190.1_g000022
rosa_roxburghii	Rroxscaffold_3G00268900
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG073100 Rh7BG074500 Rh7CG074600
rosa_wichuraiana	Rw7G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	2 cut(s)	743, 908
AclWI	GGATC	4 cut(s)	210, 523, 814, 862
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	2 cut(s)	175, 698
AfaI	GTAC	3 cut(s)	383, 670, 706
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgeI	ACCGGT	2 cut(s)	98, 218
AgsI	TTSAA	7 cut(s)	165, 409, 557, 588, 832, 848, 882
AhdI	GACNNNNNGTC	1 cut(s)	729
AluBI	AGCT	5 cut(s)	52, 107, 248, 344, 571
AluI	AGCT	5 cut(s)	52, 107, 248, 344, 571
Alw21I	GWGCWC	3 cut(s)	54, 346, 461
Alw26I	GTCTC	5 cut(s)	85, 683, 737, 862, 894
AlwI	GGATC	4 cut(s)	210, 523, 814, 862
AlwNI	CAGNNNCTG	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	583
AsiGI	ACCGGT	2 cut(s)	98, 218
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	740
AsuC2I	CCSGG	3 cut(s)	21, 236, 268
AsuHPI	GGTGA	2 cut(s)	88, 365
AsuII	TTCGAA	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	740
BanII	GRGCYC	2 cut(s)	54, 346
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	3 cut(s)	54, 346, 461
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	3 cut(s)	514, 608, 630
BceAI	ACGGC	2 cut(s)	477, 687
BcnI	CCSGG	3 cut(s)	21, 236, 268
BcoDI	GTCTC	5 cut(s)	85, 683, 737, 862, 894
BfaI	CTAG	2 cut(s)	323, 702
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	3 cut(s)	21, 236, 268
Bme18I	GGWCC	1 cut(s)	740
BmeRI	GACNNNNNGTC	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	740
BmrFI	CCNGG	3 cut(s)	21, 236, 268
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	660
Bpu14I	TTCGAA	1 cut(s)	450
BpuEI	CTTGAG	3 cut(s)	410, 758, 876
BpuMI	CCSGG	3 cut(s)	21, 236, 268
Bsa29I	ATCGAT	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	4 cut(s)	20, 140, 156, 736
BsaWI	WCCGGW	2 cut(s)	98, 218
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse118I	RCCGGY	2 cut(s)	98, 218
Bse1I	ACTGG	2 cut(s)	260, 825
Bse3DI	GCAATG	1 cut(s)	646
BseCI	ATCGAT	1 cut(s)	603
BseDI	CCNNGG	4 cut(s)	20, 140, 156, 736
BseGI	GGATG	2 cut(s)	34, 315
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	2 cut(s)	260, 825
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	476
BshTI	ACCGGT	2 cut(s)	98, 218
BshVI	ATCGAT	1 cut(s)	603
BsiHKAI	GWGCWC	3 cut(s)	54, 346, 461
BsiSI	CCGG	5 cut(s)	20, 99, 219, 235, 267
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	5 cut(s)	85, 683, 737, 862, 894
BsmBI	CGTCTC	1 cut(s)	894
Bso31I	GGTCTC	1 cut(s)	683
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	3 cut(s)	54, 346, 461
Bsp143I	GATC	5 cut(s)	121, 202, 515, 819, 867
BspACI	CCGC	2 cut(s)	743, 908
BspCNI	CTCAG	1 cut(s)	662
BspDI	ATCGAT	1 cut(s)	603
BspPI	GGATC	4 cut(s)	210, 523, 814, 862
BspQI	GCTCTTC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	450
BspTNI	GGTCTC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	646
BsrFI	RCCGGY	2 cut(s)	98, 218
BsrI	ACTGG	2 cut(s)	260, 825
BssAI	RCCGGY	2 cut(s)	98, 218
BssECI	CCNNGG	4 cut(s)	20, 140, 156, 736
BssMI	GATC	5 cut(s)	121, 202, 515, 819, 867
BssT1I	CCWWGG	3 cut(s)	140, 156, 736
Bst6I	CTCTTC	2 cut(s)	334, 849
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	34, 315
BstKTI	GATC	5 cut(s)	124, 205, 518, 822, 870
BstMAI	GTCTC	5 cut(s)	85, 683, 737, 862, 894
BstMBI	GATC	5 cut(s)	121, 202, 515, 819, 867
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 245, 473
BstSCI	CCNGG	3 cut(s)	19, 234, 266
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
Bsu15I	ATCGAT	1 cut(s)	603
BsuTUI	ATCGAT	1 cut(s)	603
BtgZI	GCGATG	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	34, 315
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr10I	RCCGGY	2 cut(s)	98, 218
Cfr13I	GGNCC	1 cut(s)	740
ClaI	ATCGAT	1 cut(s)	603
Csp6I	GTAC	3 cut(s)	382, 669, 705
CspAI	ACCGGT	2 cut(s)	98, 218
CviAII	CATG	5 cut(s)	377, 522, 685, 691, 697
CviQI	GTAC	3 cut(s)	382, 669, 705
DdeI	CTNAG	1 cut(s)	649
DpnI	GATC	5 cut(s)	123, 204, 517, 821, 869
DpnII	GATC	5 cut(s)	121, 202, 515, 819, 867
DriI	GACNNNNNGTC	1 cut(s)	729
Eam1104I	CTCTTC	2 cut(s)	334, 849
Eam1105I	GACNNNNNGTC	1 cut(s)	729
EarI	CTCTTC	2 cut(s)	334, 849
EciI	GGCGGA	1 cut(s)	732
Ecl136II	GAGCTC	2 cut(s)	52, 344
Eco130I	CCWWGG	3 cut(s)	140, 156, 736
Eco24I	GRGCYC	2 cut(s)	54, 346
Eco31I	GGTCTC	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	740
Eco53kI	GAGCTC	2 cut(s)	52, 344
Eco57I	CTGAAG	2 cut(s)	175, 698
EcoICRI	GAGCTC	2 cut(s)	52, 344
EcoRI	GAATTC	1 cut(s)	583
EcoT14I	CCWWGG	3 cut(s)	140, 156, 736
EcoT22I	ATGCAT	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	54, 346
ErhI	CCWWGG	3 cut(s)	140, 156, 736
Esp3I	CGTCTC	1 cut(s)	894
FaeI	CATG	5 cut(s)	380, 525, 688, 694, 700
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	5 cut(s)	376, 521, 684, 690, 696
FauNDI	CATATG	1 cut(s)	938
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	2 cut(s)	21, 322
FriOI	GRGCYC	2 cut(s)	54, 346
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	2 cut(s)	323, 702
GluI	GCNGC	1 cut(s)	465
HapII	CCGG	5 cut(s)	20, 99, 219, 235, 267
Hin1II	CATG	5 cut(s)	380, 525, 688, 694, 700
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	93, 577, 855, 932
HpaII	CCGG	5 cut(s)	20, 99, 219, 235, 267
HphI	GGTGA	2 cut(s)	88, 365
Hpy166II	GTNNAC	3 cut(s)	115, 137, 646
Hpy188I	TCNGA	7 cut(s)	29, 75, 85, 207, 576, 582, 652
Hpy188III	TCNNGA	1 cut(s)	790
Hpy8I	GTNNAC	3 cut(s)	115, 137, 646
Hpy99I	CGWCG	2 cut(s)	116, 119
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	376, 530, 898
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 245, 473
HpyF3I	CTNAG	1 cut(s)	649
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	380, 525, 688, 694, 700
Kzo9I	GATC	5 cut(s)	121, 202, 515, 819, 867
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	49, 349
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	323, 702
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	5 cut(s)	123, 204, 517, 821, 869
MboI	GATC	5 cut(s)	121, 202, 515, 819, 867
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	3 cut(s)	54, 346, 461
MluCI	AATT	2 cut(s)	364, 583
MlyI	GAGTC	2 cut(s)	864, 926
MmeI	TCCRAC	2 cut(s)	53, 239
MnlI	CCTC	5 cut(s)	27, 40, 418, 501, 907
Mph1103I	ATGCAT	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	2 cut(s)	224, 924
MslI	CAYNNNNRTG	2 cut(s)	689, 695
MspI	CCGG	5 cut(s)	20, 99, 219, 235, 267
MspR9I	CCNGG	3 cut(s)	21, 236, 268
MunI	CAATTG	1 cut(s)	364
MwoI	GCNNNNNNNGC	3 cut(s)	58, 245, 473
NciI	CCSGG	3 cut(s)	21, 236, 268
NdeI	CATATG	1 cut(s)	938
NdeII	GATC	5 cut(s)	121, 202, 515, 819, 867
NlaIII	CATG	5 cut(s)	380, 525, 688, 694, 700
NsiI	ATGCAT	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	93, 577
PflMI	CCANNNNNTGG	1 cut(s)	512
PinAI	ACCGGT	2 cut(s)	98, 218
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	2 cut(s)	863, 926
PpsI	GAGTC	2 cut(s)	863, 926
Psp124BI	GAGCTC	2 cut(s)	54, 346
PspPI	GGNCC	1 cut(s)	740
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	515
RsaI	GTAC	3 cut(s)	383, 670, 706
RsaNI	GTAC	3 cut(s)	382, 669, 705
RseI	CAYNNNNRTG	2 cut(s)	689, 695
SacI	GAGCTC	2 cut(s)	54, 346
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	224, 924
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	5 cut(s)	121, 202, 515, 819, 867
Sau96I	GGNCC	1 cut(s)	740
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	2 cut(s)	864, 926
ScrFI	CCNGG	3 cut(s)	21, 236, 268
SduI	GDGCHC	3 cut(s)	54, 346, 461
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	450
SgrDI	CGTCGACG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	2 cut(s)	689, 695
SmlI	CTYRAG	3 cut(s)	389, 773, 891
SmoI	CTYRAG	3 cut(s)	389, 773, 891
Sse9I	AATT	2 cut(s)	364, 583
SsiI	CCGC	2 cut(s)	743, 908
SspI	AATATT	1 cut(s)	629
SspMI	CTAG	2 cut(s)	323, 702
SstI	GAGCTC	2 cut(s)	54, 346
StyD4I	CCNGG	3 cut(s)	19, 234, 266
StyI	CCWWGG	3 cut(s)	140, 156, 736
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	3 cut(s)	114, 450, 603
TasI	AATT	2 cut(s)	364, 583
TatI	WGTACW	2 cut(s)	381, 704
TfiI	GAWTC	2 cut(s)	93, 577
Tru1I	TTAA	2 cut(s)	224, 924
Tru9I	TTAA	2 cut(s)	224, 924
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	4 cut(s)	23, 326, 701, 707
Van91I	CCANNNNNTGG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	740
XapI	RAATTY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	2 cut(s)	323, 702
ZrmI	AGTACT	1 cut(s)	706
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.