RLG00000004909

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015159
Physical Location & Seq
Reverse (-)
63601904 .. 63603719
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004909

Sequence Viewer

Length: 1131 bp
ATGCAGGAGAATCTTCCTCCTGGGTTCAGATTCCATCCAACAGATGAAGAACTGATTACGTACTATCTCGGGCGCAAGGTTTCTGATGTTAGCTTCACATCACAAGCCGTAGCTGTTGTCGATCTCAATAAGTGTGAACCTTGGGACCTCCCAGGCAAGGCTTCGATGGGAGAGAAAGAATGGTATTTCTTCAACTTAAGAGACCGAAAATACCCTACTGGACTTCGGACCAACCGAGCCACAGAAGCAGGGTATTGGAAGACAACGGGCAAAGACAAAGAAATACTTCGTCAAGGGGTACTCGTTGGAATGAAGAAAACCCTAGTTTTCTACAGGGGTAGAGCTCCAAGGGGTGAGAAAACCAACTGGGTCATGCACGAATACAGACTAGAAAACAAGCACCATCCCTTCAAATCCTCAACCTCAAAGGAAGAATGGGTGGTTTGTAGGGTGTTTCAGAAGAGCATAGCCTTGAAAAAACCACAGCAAATTACATCTTCCTCACCGCAATCTGTCGATTCTCTTGGCGAGACAAACTCAATGGTAAATGAATTTGGAGATGTGGAGTTGCCAAATTTTATGAACAACATTGCAAATTCATCTAGTACTGGGTTCATCAGCAACAACATGTCAATTCCAGAAGGCAACAATTACAACGTTATTGATAATAAGAGAATCAATAATGATGTAAACATGATCAGCACTACTTTAAACATGAATAATTGGCTCGGGGCGAGAGAGGCGGCGGCTAGTGGTGCCATTCTTCCGCCAGCAGCACTCGGATCATGGCCATCTAGCTTGCTAAGTCCATCGAATCTTTCGTCAGTGAACTCCTTGCTACTTAGGGCATTACAACTTAGGAGTAGCAGTGCTAGTCCTAATAGTACCATCTATCAGCAACCGATTAGAGATGCTACAGCAGCTGGTCTAGAAGATCATTACTCCTCTTTCATGGCAGCTCAACAGCAACAACAACAGCAGCCTGGATTAATGTCTCACTTTGGCACTGATCATAACATGAATTCGTCAAATTTGCAAGCCTCTTCATCATCTAAGGATCAGGTCATGGATTCCGTGCCACAGTCACAACAACATCCGGAGCAACCATTCAACTTGGACTCCATATGGTGA

Protein Analysis

377

Amino Acids

42.06

Weight (kDa)

7.1

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 130 1.9e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18400
fragaria_vesca FvH4_5g12090
malus_domestica MD06G1216500.v1.1 MD14G1226900.v1.1
prunus_persica Prupe.5G221600_v2.0.a1
pyrus_communis pycom06g19290 pycom14g18830
rosa_chinensis RchiOBHm_Chr7g0185481
rosa_laevigata RLG00000004909
rosa_multiflora Rmu_sc0010190.1_g000022
rosa_roxburghii Rroxscaffold_3G00268900
rosa_rugosa Rorug06G0469800
rosa_samantha Rh7AG073100 Rh7BG074500 Rh7CG074600
rosa_wichuraiana Rw7G006200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 755
AccIII TCCGGA 1 cut(s) 1096
AciI CCGC 4 cut(s) 506, 743, 746, 767
AclI AACGTT 1 cut(s) 657
AclWI GGATC 2 cut(s) 790, 1065
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 5 cut(s) 551, 574, 595, 1021, 1030
AfaI GTAC 4 cut(s) 62, 300, 607, 886
AfiI CCNNNNNNNGG 1 cut(s) 157
AflII CTTAAG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 4 cut(s) 193, 412, 475, 1111
AjnI CCWGG 3 cut(s) 19, 151, 982
AluBI AGCT 6 cut(s) 93, 113, 344, 798, 923, 959
AluI AGCT 6 cut(s) 93, 113, 344, 798, 923, 959
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 195, 524, 999
AlwI GGATC 2 cut(s) 790, 1065
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 2 cut(s) 68, 728
Aor13HI TCCGGA 1 cut(s) 1096
AoxI GGCC 1 cut(s) 788
ApeKI GCWGC 4 cut(s) 773, 920, 956, 979
ApoI RAATTY 5 cut(s) 551, 574, 595, 1021, 1030
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AseI ATTAAT 1 cut(s) 989
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 145, 228
AsuHPI GGTGA 2 cut(s) 365, 495
AvaI CYCGRG 2 cut(s) 68, 728
AvaII GGWCC 2 cut(s) 145, 228
BalI TGGCCA 1 cut(s) 790
BanI GGYRCC 1 cut(s) 755
BanII GRGCYC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 4 cut(s) 785, 932, 968, 991
BccI CCATC 6 cut(s) 42, 160, 411, 799, 817, 896
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 3 cut(s) 21, 153, 984
BclI TGATCA 2 cut(s) 696, 1009
BcoDI GTCTC 3 cut(s) 195, 524, 999
BfaI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
BfmI CTRYAG 2 cut(s) 331, 915
BfrI CTTAAG 1 cut(s) 196
BisI GCNGC 6 cut(s) 744, 747, 774, 921, 957, 980
BlsI GCNGC 6 cut(s) 745, 748, 775, 922, 958, 981
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 3 cut(s) 21, 153, 984
Bme18I GGWCC 2 cut(s) 145, 228
BmeT110I CYCGRG 2 cut(s) 68, 728
BmgT120I GGNCC 2 cut(s) 145, 228
BmiI GGNNCC 2 cut(s) 146, 757
BmrFI CCNGG 3 cut(s) 21, 153, 984
BmrI ACTGGG 2 cut(s) 376, 618
BmsI GCATC 1 cut(s) 901
BmuI ACTGGG 2 cut(s) 376, 618
BpiI GAAGAC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BsaAI YACGTR 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 20, 140, 151, 347
BsaWI WCCGGW 1 cut(s) 1096
BsaXI ACNNNNNCTCC 3 cut(s) 853, 883, 1103
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 223, 371, 613
Bse3DI GCAATG 1 cut(s) 588
BseAI TCCGGA 1 cut(s) 1096
BseBI CCWGG 3 cut(s) 21, 153, 984
BseDI CCNNGG 4 cut(s) 20, 140, 151, 347
BseGI GGATG 3 cut(s) 34, 403, 1093
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 588
BseNI ACTGG 3 cut(s) 223, 371, 613
BseRI GAGGAG 1 cut(s) 934
BseXI GCAGC 4 cut(s) 785, 932, 968, 991
BshFI GGCC 1 cut(s) 790
BshNI GGYRCC 1 cut(s) 755
BsiHKAI GWGCWC 1 cut(s) 346
BsiHKCI CYCGRG 2 cut(s) 68, 728
BsiSI CCGG 1 cut(s) 1097
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 3 cut(s) 195, 524, 999
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 790
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 2 cut(s) 68, 728
Bsp1286I GDGCHC 1 cut(s) 346
Bsp13I TCCGGA 1 cut(s) 1096
Bsp143I GATC 6 cut(s) 121, 696, 782, 934, 1009, 1057
BspACI CCGC 4 cut(s) 506, 743, 746, 767
BspANI GGCC 1 cut(s) 790
BspEI TCCGGA 1 cut(s) 1096
BspLI GGNNCC 2 cut(s) 146, 757
BspPI GGATC 2 cut(s) 790, 1065
BspQI GCTCTTC 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 755
BspTI CTTAAG 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 588
BsrI ACTGG 3 cut(s) 223, 371, 613
BssECI CCNNGG 4 cut(s) 20, 140, 151, 347
BssMI GATC 6 cut(s) 121, 696, 782, 934, 1009, 1057
BssT1I CCWWGG 2 cut(s) 140, 347
Bst2UI CCWGG 3 cut(s) 21, 153, 984
Bst4CI ACNGT 1 cut(s) 1083
Bst6I CTCTTC 2 cut(s) 455, 1048
BstAFI CTTAAG 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 60
BstC8I GCNNGC 3 cut(s) 771, 800, 1038
BstDEI CTNAG 4 cut(s) 803, 842, 857, 1053
BstF5I GGATG 3 cut(s) 34, 403, 1093
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 6 cut(s) 124, 699, 785, 937, 1012, 1060
BstMAI GTCTC 3 cut(s) 195, 524, 999
BstMBI GATC 6 cut(s) 121, 696, 782, 934, 1009, 1057
BstMWI GCNNNNNNNGC 4 cut(s) 245, 740, 755, 920
BstNI CCWGG 3 cut(s) 21, 153, 984
BstNSI RCATGY 1 cut(s) 631
BstSCI CCNGG 3 cut(s) 19, 151, 982
BstSFI CTRYAG 2 cut(s) 331, 915
BstSNI TACGTA 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 785, 932, 968, 991
BstV2I GAAGAC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 790
BtsCI GGATG 3 cut(s) 34, 403, 1093
BtsI GCAGTG 1 cut(s) 874
BtsIMutI CAGTG 3 cut(s) 831, 874, 1005
Cac8I GCNNGC 3 cut(s) 771, 800, 1038
CaiI CAGNNNCTG 1 cut(s) 923
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 145, 228
Csp6I GTAC 4 cut(s) 61, 299, 606, 885
CviAII CATG 8 cut(s) 373, 628, 694, 715, 786, 952, 1018, 1066
CviQI GTAC 4 cut(s) 61, 299, 606, 885
DdeI CTNAG 4 cut(s) 803, 842, 857, 1053
DpnI GATC 6 cut(s) 123, 698, 784, 936, 1011, 1059
DpnII GATC 6 cut(s) 121, 696, 782, 934, 1009, 1057
DraI TTTAAA 1 cut(s) 711
EaeI YGGCCR 1 cut(s) 788
Eam1104I CTCTTC 2 cut(s) 455, 1048
EarI CTCTTC 2 cut(s) 455, 1048
EciI GGCGGA 1 cut(s) 756
Ecl136II GAGCTC 1 cut(s) 344
Eco105I TACGTA 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 140, 347
Eco24I GRGCYC 1 cut(s) 346
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 145, 228
Eco53kI GAGCTC 1 cut(s) 344
Eco88I CYCGRG 2 cut(s) 68, 728
EcoICRI GAGCTC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 1021
EcoRII CCWGG 3 cut(s) 19, 151, 982
EcoT14I CCWWGG 2 cut(s) 140, 347
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 2 cut(s) 140, 347
FaeI CATG 8 cut(s) 376, 631, 697, 718, 789, 955, 1021, 1069
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 1 cut(s) 158
FatI CATG 8 cut(s) 372, 627, 693, 714, 785, 951, 1017, 1065
FauNDI CATATG 1 cut(s) 1124
FbaI TGATCA 2 cut(s) 696, 1009
Fnu4HI GCNGC 6 cut(s) 744, 747, 774, 921, 957, 980
FokI GGATG 3 cut(s) 21, 390, 1080
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 6 cut(s) 744, 747, 774, 921, 957, 980
FspBI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
GlaI GCGC 1 cut(s) 74
GluI GCNGC 6 cut(s) 744, 747, 774, 921, 957, 980
HaeIII GGCC 1 cut(s) 790
HapII CCGG 1 cut(s) 1097
HhaI GCGC 1 cut(s) 75
Hin1II CATG 8 cut(s) 376, 631, 697, 718, 789, 955, 1021, 1069
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 7 cut(s) 10, 30, 518, 675, 814, 1070, 1118
HpaII CCGG 1 cut(s) 1097
HphI GGTGA 2 cut(s) 365, 495
Hpy166II GTNNAC 3 cut(s) 137, 691, 829
Hpy188I TCNGA 5 cut(s) 29, 85, 228, 459, 782
Hpy188III TCNNGA 3 cut(s) 638, 929, 1097
Hpy8I GTNNAC 3 cut(s) 137, 691, 829
HpyAV CCTTC 2 cut(s) 418, 635
HpyCH4III ACNGT 1 cut(s) 1083
HpyCH4IV ACGT 2 cut(s) 59, 657
HpyCH4V TGCA 4 cut(s) 4, 376, 593, 1036
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 740, 755, 920
HpyF3I CTNAG 4 cut(s) 803, 842, 857, 1053
HpySE526I ACGT 2 cut(s) 59, 657
Hsp92II CATG 8 cut(s) 376, 631, 697, 718, 789, 955, 1021, 1069
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 1096
Ksp22I TGATCA 2 cut(s) 696, 1009
Kzo9I GATC 6 cut(s) 121, 696, 782, 934, 1009, 1057
LguI GCTCTTC 1 cut(s) 455
LmnI GCTCC 2 cut(s) 349, 1099
Lsp1109I GCAGC 4 cut(s) 785, 932, 968, 991
LweI GCATC 1 cut(s) 901
MaeI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
MaeII ACGT 2 cut(s) 59, 657
MaeIII GTNAC 1 cut(s) 1083
MalI GATC 6 cut(s) 123, 698, 784, 936, 1011, 1059
MboI GATC 6 cut(s) 121, 696, 782, 934, 1009, 1057
MhlI GDGCHC 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 790
MluCI AATT 9 cut(s) 489, 551, 574, 595, 633, 649, 721, 1021, 1030
MluNI TGGCCA 1 cut(s) 790
MlyI GAGTC 1 cut(s) 1112
MmeI TCCRAC 2 cut(s) 62, 286
MnlI CCTC 8 cut(s) 27, 158, 427, 433, 511, 733, 955, 1051
Mox20I TGGCCA 1 cut(s) 790
MroI TCCGGA 1 cut(s) 1096
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 790
MseI TTAA 3 cut(s) 197, 710, 989
Msp20I TGGCCA 1 cut(s) 790
MspA1I CMGCKG 1 cut(s) 923
MspCI CTTAAG 1 cut(s) 196
MspI CCGG 1 cut(s) 1097
MspR9I CCNGG 3 cut(s) 21, 153, 984
MvaI CCWGG 3 cut(s) 21, 153, 984
MwoI GCNNNNNNNGC 4 cut(s) 245, 740, 755, 920
NdeI CATATG 1 cut(s) 1124
NdeII GATC 6 cut(s) 121, 696, 782, 934, 1009, 1057
NlaIII CATG 8 cut(s) 376, 631, 697, 718, 789, 955, 1021, 1069
NlaIV GGNNCC 2 cut(s) 146, 757
NmuCI GTSAC 1 cut(s) 1083
NspI RCATGY 1 cut(s) 631
PciI ACATGT 1 cut(s) 627
PciSI GCTCTTC 1 cut(s) 455
PcsI WCGNNNNNNNCGW 2 cut(s) 232, 818
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 6 cut(s) 10, 30, 518, 675, 814, 1070
PkrI GCNGC 6 cut(s) 745, 748, 775, 922, 958, 981
PleI GAGTC 1 cut(s) 1112
PpsI GAGTC 1 cut(s) 1112
Ppu21I YACGTR 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 145
PscI ACATGT 1 cut(s) 627
PshBI ATTAAT 1 cut(s) 989
Psp124BI GAGCTC 1 cut(s) 346
Psp1406I AACGTT 1 cut(s) 657
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 3 cut(s) 19, 151, 982
PspGI CCWGG 3 cut(s) 19, 151, 982
PspN4I GGNNCC 2 cut(s) 146, 757
PspPI GGNCC 2 cut(s) 145, 228
PspPPI RGGWCCY 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 923
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 4 cut(s) 62, 300, 607, 886
RsaNI GTAC 4 cut(s) 61, 299, 606, 885
SacI GAGCTC 1 cut(s) 346
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 3 cut(s) 197, 710, 989
SatI GCNGC 6 cut(s) 744, 747, 774, 921, 957, 980
Sau3AI GATC 6 cut(s) 121, 696, 782, 934, 1009, 1057
Sau96I GGNCC 2 cut(s) 145, 228
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 1 cut(s) 1112
ScrFI CCNGG 3 cut(s) 21, 153, 984
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 1 cut(s) 901
SfcI CTRYAG 2 cut(s) 331, 915
SinI GGWCC 2 cut(s) 145, 228
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SnaBI TACGTA 1 cut(s) 60
Sse9I AATT 9 cut(s) 489, 551, 574, 595, 633, 649, 721, 1021, 1030
SsiI CCGC 4 cut(s) 506, 743, 746, 767
SspMI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
SstI GAGCTC 1 cut(s) 346
StyD4I CCNGG 3 cut(s) 19, 151, 982
StyI CCWWGG 2 cut(s) 140, 347
TaaI ACNGT 1 cut(s) 1083
TaiI ACGT 2 cut(s) 62, 660
TaqI TCGA 4 cut(s) 120, 164, 516, 812
TaqII GACCGA 1 cut(s) 219
TasI AATT 9 cut(s) 489, 551, 574, 595, 633, 649, 721, 1021, 1030
TatI WGTACW 1 cut(s) 605
TauI GCSGC 2 cut(s) 746, 749
TfiI GAWTC 6 cut(s) 10, 30, 518, 675, 814, 1070
Tru1I TTAA 3 cut(s) 197, 710, 989
Tru9I TTAA 3 cut(s) 197, 710, 989
TscAI CASTG 3 cut(s) 831, 874, 1012
TseFI GTSAC 1 cut(s) 1083
TseI GCWGC 4 cut(s) 773, 920, 956, 979
Tsp45I GTSAC 1 cut(s) 1083
TspGWI ACGGA 1 cut(s) 1063
TspRI CASTG 3 cut(s) 831, 874, 1012
Vha464I CTTAAG 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 145, 228
VspI ATTAAT 1 cut(s) 989
XapI RAATTY 5 cut(s) 551, 574, 595, 1021, 1030
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
ZrmI AGTACT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.