Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015159

Physical Location & Seq

Genomic Coordinates Forward (+)

5610942 .. 5612767

Gene Structure 1826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCAGGAGAATCTTCCTCCTGGGTTCAGATTCCATCCAACAGATGAAGAACTGATTACATACTATCTCGGGCGCAAGGTTTCTGATGTTAGCTTCACATCACAAGCCGTAGCTGTTGTCGATCTCAATAAGTGTGAACCTTGGGACCTCCCAGGCAAGGCTTCGATGGGAGAGAAAGAATGGTATTTCTTCAACTTAAGAGACCGAAAATACCCTACTGGACTTCGGACCAACCGAGCCACAGAAGCAGGGTATTGGAAGACAACTGGCAAAGACAAAGAAATACTTCGTCAAGGGGTACTCGTTGGAATGAAGAAAACCCTAGTTTTCTACAGGGGTAGAGCTCCAAGGGGTGAGAAAACCAACTGGGTCATGCACGAATACAGACTAGAAAACAAGCACCATCCCTTCAAATCCTCAACCTCAAAGGAAGAATGGGTGGTTTGTAGGGTGTTTCAGAAGAGCATAGCCTTGAAAAAACCACAGCAAATTACATCTTCCTCACCGCAATCTGTCGATTCTCTTGGCGAGACAAACTCAATGATAAATGAATTTGGAGATGTGGAGTTGCCTAATTTTATGAACAACATTGCAAATTCATCTAGTACTGGGTTCATCAGCAACAACATGTCAATTCCAGAAGGCAACAATTACAACGTTATTGATAATAAGAGAATCAATAATGATGTTAACATGATCAGCACTACTTTAAACATGAATAATTGGCTCGGGGCGAGAGAGGCGGCGGCTAGTGGTGCCATTCTTCCGGCAGCAGCACTCGGATCATGGCCATCTAGCTTGCTAAGTCCATCGAATCTTTCGTCAGTGAACTCCTTGCTACTTAGGGCATTACAACTTAGGAGTAGCAGTGCTAGTACTAATAGTACCATCTATCAGCAACCGATTAGAGATGCTACAGCAGCTGGTCTAGAAGATCACTACTCCTCTTTCATGGCAGCTCAACAGCAACAGCAACAGCAACAGCAACCTGGATTAATGTCTCACTTTGGCACTGATCATAACATGAATTCGTCAAATTTGCAAGCCTCTTCATCATCTAAGGATCAGGTCATGGATTCCGTGCCGCAGTCACAACAGCATCCGGGGCAACCATTCAACTTGGACTCCATATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090691 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

378

Amino Acids

42.24

Weight (kDa)

7.77

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	6 - 130	2e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18400
fragaria_vesca	FvH4_5g12090
malus_domestica	MD06G1216500.v1.1 MD14G1226900.v1.1
prunus_persica	Prupe.5G221600_v2.0.a1
pyrus_communis	pycom06g19290 pycom14g18830
rosa_chinensis	RchiOBHm_Chr7g0185481
rosa_laevigata	RLG00000004909
rosa_multiflora	Rmu_sc0010190.1_g000022
rosa_roxburghii	Rroxscaffold_3G00268900
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG073100 Rh7BG074500 Rh7CG074600
rosa_wichuraiana	Rw7G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	755
AciI	CCGC	4 cut(s)	506, 743, 746, 1085
AclI	AACGTT	1 cut(s)	657
AclWI	GGATC	2 cut(s)	790, 1071
AcoI	YGGCCR	1 cut(s)	788
AcsI	RAATTY	4 cut(s)	551, 595, 1027, 1036
AfaI	GTAC	4 cut(s)	300, 607, 877, 886
AfiI	CCNNNNNNNGG	1 cut(s)	157
AflII	CTTAAG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	4 cut(s)	193, 412, 475, 1117
AjnI	CCWGG	3 cut(s)	19, 151, 988
AluBI	AGCT	6 cut(s)	93, 113, 344, 798, 923, 959
AluI	AGCT	6 cut(s)	93, 113, 344, 798, 923, 959
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	3 cut(s)	195, 524, 1005
AlwI	GGATC	2 cut(s)	790, 1071
AlwNI	CAGNNNCTG	1 cut(s)	923
Ama87I	CYCGRG	2 cut(s)	68, 728
AoxI	GGCC	1 cut(s)	788
ApeKI	GCWGC	4 cut(s)	770, 773, 920, 956
ApoI	RAATTY	4 cut(s)	551, 595, 1027, 1036
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AseI	ATTAAT	1 cut(s)	995
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	145, 228
AsuC2I	CCSGG	1 cut(s)	1104
AsuHPI	GGTGA	2 cut(s)	365, 495
AvaI	CYCGRG	2 cut(s)	68, 728
AvaII	GGWCC	2 cut(s)	145, 228
BalI	TGGCCA	1 cut(s)	790
BanI	GGYRCC	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	4 cut(s)	782, 785, 932, 968
BccI	CCATC	6 cut(s)	42, 160, 411, 799, 817, 896
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	3 cut(s)	21, 153, 990
BclI	TGATCA	2 cut(s)	696, 1015
BcnI	CCSGG	1 cut(s)	1104
BcoDI	GTCTC	3 cut(s)	195, 524, 1005
BfaI	CTAG	7 cut(s)	323, 389, 603, 750, 795, 873, 929
BfmI	CTRYAG	2 cut(s)	331, 915
BfrI	CTTAAG	1 cut(s)	196
BisI	GCNGC	7 cut(s)	744, 747, 771, 774, 921, 957, 1085
BlsI	GCNGC	7 cut(s)	745, 748, 772, 775, 922, 958, 1086
BmcAI	AGTACT	2 cut(s)	607, 877
Bme1390I	CCNGG	4 cut(s)	21, 153, 990, 1104
Bme18I	GGWCC	2 cut(s)	145, 228
BmeT110I	CYCGRG	2 cut(s)	68, 728
BmgT120I	GGNCC	2 cut(s)	145, 228
BmiI	GGNNCC	2 cut(s)	146, 757
BmrFI	CCNGG	4 cut(s)	21, 153, 990, 1104
BmrI	ACTGGG	2 cut(s)	376, 618
BmsI	GCATC	2 cut(s)	901, 1108
BmuI	ACTGGG	2 cut(s)	376, 618
BpiI	GAAGAC	1 cut(s)	266
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
BpuMI	CCSGG	1 cut(s)	1104
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	5 cut(s)	20, 140, 151, 347, 1103
BsaXI	ACNNNNNCTCC	3 cut(s)	853, 883, 1109
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	4 cut(s)	223, 271, 371, 613
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	3 cut(s)	21, 153, 990
BseDI	CCNNGG	5 cut(s)	20, 140, 151, 347, 1103
BseGI	GGATG	3 cut(s)	34, 403, 1099
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	588
BseNI	ACTGG	4 cut(s)	223, 271, 371, 613
BseRI	GAGGAG	1 cut(s)	934
BseXI	GCAGC	4 cut(s)	782, 785, 932, 968
BshFI	GGCC	1 cut(s)	790
BshNI	GGYRCC	1 cut(s)	755
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	2 cut(s)	68, 728
BsiSI	CCGG	2 cut(s)	767, 1103
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	3 cut(s)	195, 524, 1005
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	790
Bso31I	GGTCTC	1 cut(s)	195
BsoBI	CYCGRG	2 cut(s)	68, 728
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	6 cut(s)	121, 696, 782, 934, 1015, 1063
BspACI	CCGC	4 cut(s)	506, 743, 746, 1085
BspANI	GGCC	1 cut(s)	790
BspLI	GGNNCC	2 cut(s)	146, 757
BspPI	GGATC	2 cut(s)	790, 1071
BspQI	GCTCTTC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	755
BspTI	CTTAAG	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	4 cut(s)	223, 271, 371, 613
BssECI	CCNNGG	5 cut(s)	20, 140, 151, 347, 1103
BssMI	GATC	6 cut(s)	121, 696, 782, 934, 1015, 1063
BssT1I	CCWWGG	2 cut(s)	140, 347
Bst2UI	CCWGG	3 cut(s)	21, 153, 990
Bst6I	CTCTTC	2 cut(s)	455, 1054
BstAFI	CTTAAG	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	800, 1044
BstDEI	CTNAG	4 cut(s)	803, 842, 857, 1059
BstF5I	GGATG	3 cut(s)	34, 403, 1099
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	6 cut(s)	124, 699, 785, 937, 1018, 1066
BstMAI	GTCTC	3 cut(s)	195, 524, 1005
BstMBI	GATC	6 cut(s)	121, 696, 782, 934, 1015, 1063
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 740, 755, 920, 1105
BstNI	CCWGG	3 cut(s)	21, 153, 990
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	4 cut(s)	19, 151, 988, 1102
BstSFI	CTRYAG	2 cut(s)	331, 915
BstV1I	GCAGC	4 cut(s)	782, 785, 932, 968
BstV2I	GAAGAC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	790
BtsCI	GGATG	3 cut(s)	34, 403, 1099
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	3 cut(s)	831, 874, 1011
Cac8I	GCNNGC	2 cut(s)	800, 1044
CaiI	CAGNNNCTG	1 cut(s)	923
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	145, 228
Csp6I	GTAC	4 cut(s)	299, 606, 876, 885
CviAII	CATG	8 cut(s)	373, 628, 694, 715, 786, 952, 1024, 1072
CviQI	GTAC	4 cut(s)	299, 606, 876, 885
DdeI	CTNAG	4 cut(s)	803, 842, 857, 1059
DpnI	GATC	6 cut(s)	123, 698, 784, 936, 1017, 1065
DpnII	GATC	6 cut(s)	121, 696, 782, 934, 1015, 1063
DraI	TTTAAA	1 cut(s)	711
EaeI	YGGCCR	1 cut(s)	788
Eam1104I	CTCTTC	2 cut(s)	455, 1054
EarI	CTCTTC	2 cut(s)	455, 1054
Ecl136II	GAGCTC	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	140, 347
Eco24I	GRGCYC	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	145, 228
Eco53kI	GAGCTC	1 cut(s)	344
Eco88I	CYCGRG	2 cut(s)	68, 728
EcoICRI	GAGCTC	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	1027
EcoRII	CCWGG	3 cut(s)	19, 151, 988
EcoT14I	CCWWGG	2 cut(s)	140, 347
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	140, 347
FaeI	CATG	8 cut(s)	376, 631, 697, 718, 789, 955, 1027, 1075
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	8 cut(s)	372, 627, 693, 714, 785, 951, 1023, 1071
FauNDI	CATATG	1 cut(s)	1130
FbaI	TGATCA	2 cut(s)	696, 1015
Fnu4HI	GCNGC	7 cut(s)	744, 747, 771, 774, 921, 957, 1085
FokI	GGATG	3 cut(s)	21, 390, 1086
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	7 cut(s)	744, 747, 771, 774, 921, 957, 1085
FspBI	CTAG	7 cut(s)	323, 389, 603, 750, 795, 873, 929
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	7 cut(s)	744, 747, 771, 774, 921, 957, 1085
HaeIII	GGCC	1 cut(s)	790
HapII	CCGG	2 cut(s)	767, 1103
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	8 cut(s)	376, 631, 697, 718, 789, 955, 1027, 1075
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HinfI	GANTC	7 cut(s)	10, 30, 518, 675, 814, 1076, 1124
HpaI	GTTAAC	1 cut(s)	691
HpaII	CCGG	2 cut(s)	767, 1103
HphI	GGTGA	2 cut(s)	365, 495
Hpy166II	GTNNAC	3 cut(s)	137, 691, 829
Hpy188I	TCNGA	5 cut(s)	29, 85, 228, 459, 782
Hpy188III	TCNNGA	2 cut(s)	638, 929
Hpy8I	GTNNAC	3 cut(s)	137, 691, 829
HpyAV	CCTTC	2 cut(s)	418, 635
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	4 cut(s)	4, 376, 593, 1042
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 740, 755, 920, 1105
HpyF3I	CTNAG	4 cut(s)	803, 842, 857, 1059
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	8 cut(s)	376, 631, 697, 718, 789, 955, 1027, 1075
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	2 cut(s)	696, 1015
KspAI	GTTAAC	1 cut(s)	691
Kzo9I	GATC	6 cut(s)	121, 696, 782, 934, 1015, 1063
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	4 cut(s)	782, 785, 932, 968
LweI	GCATC	2 cut(s)	901, 1108
MaeI	CTAG	7 cut(s)	323, 389, 603, 750, 795, 873, 929
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	1 cut(s)	1089
MalI	GATC	6 cut(s)	123, 698, 784, 936, 1017, 1065
MboI	GATC	6 cut(s)	121, 696, 782, 934, 1015, 1063
MhlI	GDGCHC	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	790
MluCI	AATT	9 cut(s)	489, 551, 574, 595, 633, 649, 721, 1027, 1036
MluNI	TGGCCA	1 cut(s)	790
MlyI	GAGTC	1 cut(s)	1118
MmeI	TCCRAC	2 cut(s)	62, 286
MnlI	CCTC	8 cut(s)	27, 158, 427, 433, 511, 733, 955, 1057
Mox20I	TGGCCA	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	790
MseI	TTAA	4 cut(s)	197, 690, 710, 995
Msp20I	TGGCCA	1 cut(s)	790
MspA1I	CMGCKG	1 cut(s)	923
MspCI	CTTAAG	1 cut(s)	196
MspI	CCGG	2 cut(s)	767, 1103
MspR9I	CCNGG	4 cut(s)	21, 153, 990, 1104
MvaI	CCWGG	3 cut(s)	21, 153, 990
MwoI	GCNNNNNNNGC	5 cut(s)	245, 740, 755, 920, 1105
NciI	CCSGG	1 cut(s)	1104
NdeI	CATATG	1 cut(s)	1130
NdeII	GATC	6 cut(s)	121, 696, 782, 934, 1015, 1063
NlaIII	CATG	8 cut(s)	376, 631, 697, 718, 789, 955, 1027, 1075
NlaIV	GGNNCC	2 cut(s)	146, 757
NmuCI	GTSAC	1 cut(s)	1089
NspI	RCATGY	1 cut(s)	631
PciI	ACATGT	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	2 cut(s)	232, 818
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	6 cut(s)	10, 30, 518, 675, 814, 1076
PkrI	GCNGC	7 cut(s)	745, 748, 772, 775, 922, 958, 1086
PleI	GAGTC	1 cut(s)	1118
PpsI	GAGTC	1 cut(s)	1118
PpuMI	RGGWCCY	1 cut(s)	145
PscI	ACATGT	1 cut(s)	627
PshBI	ATTAAT	1 cut(s)	995
Psp124BI	GAGCTC	1 cut(s)	346
Psp1406I	AACGTT	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	19, 151, 988
PspGI	CCWGG	3 cut(s)	19, 151, 988
PspN4I	GGNNCC	2 cut(s)	146, 757
PspPI	GGNCC	2 cut(s)	145, 228
PspPPI	RGGWCCY	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	4 cut(s)	300, 607, 877, 886
RsaNI	GTAC	4 cut(s)	299, 606, 876, 885
SacI	GAGCTC	1 cut(s)	346
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	4 cut(s)	197, 690, 710, 995
SatI	GCNGC	7 cut(s)	744, 747, 771, 774, 921, 957, 1085
Sau3AI	GATC	6 cut(s)	121, 696, 782, 934, 1015, 1063
Sau96I	GGNCC	2 cut(s)	145, 228
ScaI	AGTACT	2 cut(s)	607, 877
SchI	GAGTC	1 cut(s)	1118
ScrFI	CCNGG	4 cut(s)	21, 153, 990, 1104
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	2 cut(s)	901, 1108
SfcI	CTRYAG	2 cut(s)	331, 915
SinI	GGWCC	2 cut(s)	145, 228
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	9 cut(s)	489, 551, 574, 595, 633, 649, 721, 1027, 1036
SsiI	CCGC	4 cut(s)	506, 743, 746, 1085
SspMI	CTAG	7 cut(s)	323, 389, 603, 750, 795, 873, 929
SstI	GAGCTC	1 cut(s)	346
StyD4I	CCNGG	4 cut(s)	19, 151, 988, 1102
StyI	CCWWGG	2 cut(s)	140, 347
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	4 cut(s)	120, 164, 516, 812
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	9 cut(s)	489, 551, 574, 595, 633, 649, 721, 1027, 1036
TatI	WGTACW	2 cut(s)	605, 875
TauI	GCSGC	3 cut(s)	746, 749, 1087
TfiI	GAWTC	6 cut(s)	10, 30, 518, 675, 814, 1076
Tru1I	TTAA	4 cut(s)	197, 690, 710, 995
Tru9I	TTAA	4 cut(s)	197, 690, 710, 995
TscAI	CASTG	3 cut(s)	831, 874, 1018
TseFI	GTSAC	1 cut(s)	1089
TseI	GCWGC	4 cut(s)	770, 773, 920, 956
Tsp45I	GTSAC	1 cut(s)	1089
TspGWI	ACGGA	1 cut(s)	1069
TspRI	CASTG	3 cut(s)	831, 874, 1018
Vha464I	CTTAAG	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	145, 228
VspI	ATTAAT	1 cut(s)	995
XapI	RAATTY	4 cut(s)	551, 595, 1027, 1036
XbaI	TCTAGA	1 cut(s)	928
XceI	RCATGY	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	7 cut(s)	323, 389, 603, 750, 795, 873, 929
ZrmI	AGTACT	2 cut(s)	607, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.