FvH4_5g12090

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015159
Physical Location & Seq
Reverse (-)
6822658 .. 6825267
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12090.t1

Sequence Viewer

Length: 1131 bp
ATGCAGGAGAATCTTCCTCCAGGGTTCAGATTCCATCCTACAGATGAAGAACTGATTACGTATTATCTCGGTCGCAAGGTTTCTGATGTTAGTTTCACATCACAAGCCGTAGCTGTTGTCGATCTCAATAAGTGCGAACCTTGGGACCTCCCAGGCAAGGCATCTATGGGAGAGAAAGAGTGGTACTTCTTCAACTTGAGAGACCGGAAATACCCAACTGGACTTCGGACCAACCGAGCCACAGAAGCTGGGTACTGGAAGACAACTGGAAAAGACAAAGAGATACTTCGTCAAGGTGTACTGGTTGGGATGAAGAAGACCCTAGTTTTCTACAAGGGTAGAGCTCCAAGGGGTGAGAAAACCAACTGGGTCATGCACGAATACAGACTAGAAAACAAGCACCACCCCTTCAAATCCTCAGCTTCAAAGGAAGAATGGGTGGTTTGTAGGGTGTTTCAGAAGAGCATAGCATTGAAGAAACCACAGCAAATGACGTCTTCCTCACCGCAATCTGTCGATTCACCAGGCGAGACAAACTCAATGGTAAATGAATTTGGAGACGTGGAGTTGCCAAACTTTATGAACAACGTTGCAAATTCATCTAGCCCTGGGTTCATCAGCAACATGTCAATTCCACAAGGCAACAATTACAACATTATTGATAGTAAGATGATCAATAATGATGTTAACATGATGAACACTACTTTAAACATGAATAATTGGCTCGGGGCGAGAGAGGCAGCGGCTAGTGGTGCTATTCTTCCGGCAGCAGCACTCGGATCATGGCCATCTAGCTTGCTAAGTCCCTCGAATCTTTCGTCGGTGAACTCCTTGCTACTAAGGGCATTACAACTTAGGAGTAACAGTGCTAGTACTAATAGTACCATCTATCAACAACCGATTAGATCAGATGATGCAGCAGCTGGTCTGGAAGATCATTACTCATCTTTCATGGAGGCGCAACAACAACAGCAACGGCAGCCTGGATTAATGTCTCACTTTGGCACTGATCATAACATGAATTCGTCGAATGTGCAAGCTTCATCATCATCTAAGGATCAGATCATGGATTCCATGCCGCAGTCACAACAGCATCTGGAGCAACCATTCAACTTGGACTCCATTTGGTGA

Protein Analysis

377

Amino Acids

42.12

Weight (kDa)

6.72

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 130 1.4e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18400
fragaria_vesca FvH4_5g12090
malus_domestica MD06G1216500.v1.1 MD14G1226900.v1.1
prunus_persica Prupe.5G221600_v2.0.a1
pyrus_communis pycom06g19290 pycom14g18830
rosa_chinensis RchiOBHm_Chr7g0185481
rosa_laevigata RLG00000004909
rosa_multiflora Rmu_sc0010190.1_g000022
rosa_roxburghii Rroxscaffold_3G00268900
rosa_rugosa Rorug06G0469800
rosa_samantha Rh7AG073100 Rh7BG074500 Rh7CG074600
rosa_wichuraiana Rw7G006200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 497
AciI CCGC 3 cut(s) 506, 743, 1079
AclI AACGTT 1 cut(s) 588
AclWI GGATC 2 cut(s) 787, 1065
AcoI YGGCCR 1 cut(s) 785
AcsI RAATTY 3 cut(s) 551, 595, 1021
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 5 cut(s) 185, 254, 300, 874, 883
AfiI CCNNNNNNNGG 1 cut(s) 157
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 5 cut(s) 193, 412, 426, 475, 1111
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 5 cut(s) 19, 151, 523, 607, 982
AluBI AGCT 7 cut(s) 113, 248, 344, 422, 795, 923, 1040
AluI AGCT 7 cut(s) 113, 248, 344, 422, 795, 923, 1040
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 4 cut(s) 195, 524, 552, 999
AlwI GGATC 2 cut(s) 787, 1065
AlwNI CAGNNNCTG 3 cut(s) 248, 923, 1096
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 1 cut(s) 785
ApeKI GCWGC 6 cut(s) 740, 767, 770, 917, 920, 979
ApoI RAATTY 3 cut(s) 551, 595, 1021
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
AseI ATTAAT 1 cut(s) 989
AspLEI GCGC 1 cut(s) 961
AspS9I GGNCC 2 cut(s) 145, 228
AsuHPI GGTGA 4 cut(s) 365, 495, 513, 835
AvaI CYCGRG 1 cut(s) 725
AvaII GGWCC 2 cut(s) 145, 228
BalI TGGCCA 1 cut(s) 787
BanII GRGCYC 1 cut(s) 346
BbsI GAAGAC 3 cut(s) 266, 323, 489
Bbv12I GWGCWC 1 cut(s) 346
BbvCI CCTCAGC 1 cut(s) 418
BbvI GCAGC 6 cut(s) 752, 779, 782, 929, 932, 991
BccI CCATC 3 cut(s) 42, 796, 893
BceAI ACGGC 2 cut(s) 92, 992
BciT130I CCWGG 5 cut(s) 21, 153, 525, 609, 984
BclI TGATCA 2 cut(s) 672, 1009
BcoDI GTCTC 4 cut(s) 195, 524, 552, 999
BfaI CTAG 6 cut(s) 323, 389, 603, 747, 792, 870
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 8 cut(s) 741, 744, 768, 771, 918, 921, 980, 1079
BlsI GCNGC 8 cut(s) 742, 745, 769, 772, 919, 922, 981, 1080
BmcAI AGTACT 1 cut(s) 874
Bme1390I CCNGG 5 cut(s) 21, 153, 525, 609, 984
Bme18I GGWCC 2 cut(s) 145, 228
BmeT110I CYCGRG 1 cut(s) 725
BmgBI CACGTC 1 cut(s) 562
BmgT120I GGNCC 2 cut(s) 145, 228
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 5 cut(s) 21, 153, 525, 609, 984
BmrI ACTGGG 1 cut(s) 376
BmsI GCATC 3 cut(s) 170, 904, 1102
BmuI ACTGGG 1 cut(s) 376
BpiI GAAGAC 3 cut(s) 266, 323, 489
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BpmI CTGGAG 1 cut(s) 1118
Bpu10I CCTNAGC 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 6 cut(s) 20, 140, 151, 347, 607, 608
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 3 cut(s) 850, 880, 1103
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 5 cut(s) 223, 260, 271, 306, 371
BseBI CCWGG 5 cut(s) 21, 153, 525, 609, 984
BseDI CCNNGG 6 cut(s) 20, 140, 151, 347, 607, 608
BseGI GGATG 2 cut(s) 34, 315
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 5 cut(s) 223, 260, 271, 306, 371
BseXI GCAGC 6 cut(s) 752, 779, 782, 929, 932, 991
BseYI CCCAGC 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 787
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 2 cut(s) 205, 764
BslFI GGGAC 2 cut(s) 158, 789
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 4 cut(s) 195, 524, 552, 999
BsmBI CGTCTC 1 cut(s) 552
BsmFI GGGAC 2 cut(s) 158, 789
BsnI GGCC 1 cut(s) 787
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 725
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 8 cut(s) 121, 672, 779, 905, 934, 1009, 1057, 1062
BspACI CCGC 3 cut(s) 506, 743, 1079
BspANI GGCC 1 cut(s) 787
BspCNI CTCAG 1 cut(s) 431
BspLI GGNNCC 1 cut(s) 146
BspPI GGATC 2 cut(s) 787, 1065
BspQI GCTCTTC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 195
BsrI ACTGG 5 cut(s) 223, 260, 271, 306, 371
BssECI CCNNGG 6 cut(s) 20, 140, 151, 347, 607, 608
BssMI GATC 8 cut(s) 121, 672, 779, 905, 934, 1009, 1057, 1062
BssNI GRCGYC 1 cut(s) 494
BssT1I CCWWGG 2 cut(s) 140, 347
Bst2UI CCWGG 5 cut(s) 21, 153, 525, 609, 984
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 1 cut(s) 455
BstACI GRCGYC 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 797, 1038
BstDEI CTNAG 5 cut(s) 418, 800, 839, 854, 1053
BstF5I GGATG 2 cut(s) 34, 315
BstHHI GCGC 1 cut(s) 961
BstKTI GATC 8 cut(s) 124, 675, 782, 908, 937, 1012, 1060, 1065
BstMAI GTCTC 4 cut(s) 195, 524, 552, 999
BstMBI GATC 8 cut(s) 121, 672, 779, 905, 934, 1009, 1057, 1062
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 5 cut(s) 245, 737, 752, 979, 1099
BstNI CCWGG 5 cut(s) 21, 153, 525, 609, 984
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 5 cut(s) 19, 151, 523, 607, 982
BstSFI CTRYAG 1 cut(s) 39
BstSNI TACGTA 1 cut(s) 60
BstV1I GCAGC 6 cut(s) 752, 779, 782, 929, 932, 991
BstV2I GAAGAC 3 cut(s) 266, 323, 489
BsuRI GGCC 1 cut(s) 787
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 2 cut(s) 34, 315
BtsIMutI CAGTG 2 cut(s) 871, 1005
Cac8I GCNNGC 2 cut(s) 797, 1038
CaiI CAGNNNCTG 3 cut(s) 248, 923, 1096
CfoI GCGC 1 cut(s) 961
Cfr13I GGNCC 2 cut(s) 145, 228
Csp6I GTAC 5 cut(s) 184, 253, 299, 873, 882
CviAII CATG 9 cut(s) 373, 625, 691, 712, 783, 952, 1018, 1066, 1075
CviQI GTAC 5 cut(s) 184, 253, 299, 873, 882
DdeI CTNAG 5 cut(s) 418, 800, 839, 854, 1053
DpnI GATC 8 cut(s) 123, 674, 781, 907, 936, 1011, 1059, 1064
DpnII GATC 8 cut(s) 121, 672, 779, 905, 934, 1009, 1057, 1062
DraI TTTAAA 1 cut(s) 708
EaeI YGGCCR 1 cut(s) 785
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Ecl136II GAGCTC 1 cut(s) 344
Eco105I TACGTA 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 140, 347
Eco24I GRGCYC 1 cut(s) 346
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 145, 228
Eco53kI GAGCTC 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 1021
EcoRII CCWGG 5 cut(s) 19, 151, 523, 607, 982
EcoT14I CCWWGG 2 cut(s) 140, 347
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 2 cut(s) 140, 347
Esp3I CGTCTC 1 cut(s) 552
FaeI CATG 9 cut(s) 376, 628, 694, 715, 786, 955, 1021, 1069, 1078
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 2 cut(s) 158, 789
FatI CATG 9 cut(s) 372, 624, 690, 711, 782, 951, 1017, 1065, 1074
FbaI TGATCA 2 cut(s) 672, 1009
Fnu4HI GCNGC 8 cut(s) 741, 744, 768, 771, 918, 921, 980, 1079
FokI GGATG 2 cut(s) 21, 322
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 8 cut(s) 741, 744, 768, 771, 918, 921, 980, 1079
FspBI CTAG 6 cut(s) 323, 389, 603, 747, 792, 870
GlaI GCGC 1 cut(s) 960
GluI GCNGC 8 cut(s) 741, 744, 768, 771, 918, 921, 980, 1079
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 1118
HaeIII GGCC 1 cut(s) 787
HapII CCGG 2 cut(s) 205, 764
HhaI GCGC 1 cut(s) 961
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 9 cut(s) 376, 628, 694, 715, 786, 955, 1021, 1069, 1078
Hin6I GCGC 1 cut(s) 959
HinP1I GCGC 1 cut(s) 959
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 1 cut(s) 1038
HinfI GANTC 6 cut(s) 10, 30, 518, 811, 1070, 1118
HpaI GTTAAC 1 cut(s) 688
HpaII CCGG 2 cut(s) 205, 764
HphI GGTGA 4 cut(s) 365, 495, 513, 835
Hpy166II GTNNAC 3 cut(s) 299, 688, 826
Hpy188I TCNGA 7 cut(s) 29, 85, 228, 459, 779, 910, 1062
Hpy188III TCNNGA 2 cut(s) 929, 1097
Hpy8I GTNNAC 3 cut(s) 299, 688, 826
Hpy99I CGWCG 2 cut(s) 823, 1030
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4IV ACGT 4 cut(s) 59, 494, 561, 588
HpyCH4V TGCA 5 cut(s) 4, 376, 593, 917, 1036
HpyF10VI GCNNNNNNNGC 5 cut(s) 245, 737, 752, 979, 1099
HpyF3I CTNAG 5 cut(s) 418, 800, 839, 854, 1053
HpySE526I ACGT 4 cut(s) 59, 494, 561, 588
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 9 cut(s) 376, 628, 694, 715, 786, 955, 1021, 1069, 1078
HspAI GCGC 1 cut(s) 959
Ksp22I TGATCA 2 cut(s) 672, 1009
KspAI GTTAAC 1 cut(s) 688
Kzo9I GATC 8 cut(s) 121, 672, 779, 905, 934, 1009, 1057, 1062
LguI GCTCTTC 1 cut(s) 455
LmnI GCTCC 2 cut(s) 349, 1099
Lsp1109I GCAGC 6 cut(s) 752, 779, 782, 929, 932, 991
LweI GCATC 3 cut(s) 170, 904, 1102
MaeI CTAG 6 cut(s) 323, 389, 603, 747, 792, 870
MaeII ACGT 4 cut(s) 59, 494, 561, 588
MaeIII GTNAC 2 cut(s) 860, 1083
MalI GATC 8 cut(s) 123, 674, 781, 907, 936, 1011, 1059, 1064
MboI GATC 8 cut(s) 121, 672, 779, 905, 934, 1009, 1057, 1062
MhlI GDGCHC 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 787
MluCI AATT 6 cut(s) 551, 595, 630, 646, 718, 1021
MluNI TGGCCA 1 cut(s) 787
MlyI GAGTC 1 cut(s) 1112
MnlI CCTC 7 cut(s) 27, 158, 427, 511, 730, 817, 949
Mox20I TGGCCA 1 cut(s) 787
MscI TGGCCA 1 cut(s) 787
MseI TTAA 3 cut(s) 687, 707, 989
Msp20I TGGCCA 1 cut(s) 787
MspA1I CMGCKG 2 cut(s) 743, 923
MspI CCGG 2 cut(s) 205, 764
MspR9I CCNGG 5 cut(s) 21, 153, 525, 609, 984
MvaI CCWGG 5 cut(s) 21, 153, 525, 609, 984
MwoI GCNNNNNNNGC 5 cut(s) 245, 737, 752, 979, 1099
NdeII GATC 8 cut(s) 121, 672, 779, 905, 934, 1009, 1057, 1062
NlaIII CATG 9 cut(s) 376, 628, 694, 715, 786, 955, 1021, 1069, 1078
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 1083
NspI RCATGY 1 cut(s) 628
PasI CCCWGGG 1 cut(s) 608
PciI ACATGT 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 455
PcsI WCGNNNNNNNCGW 2 cut(s) 232, 815
PfeI GAWTC 5 cut(s) 10, 30, 518, 811, 1070
PkrI GCNGC 8 cut(s) 742, 745, 769, 772, 919, 922, 981, 1080
PleI GAGTC 1 cut(s) 1112
PpsI GAGTC 1 cut(s) 1112
Ppu21I YACGTR 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 145
PscI ACATGT 1 cut(s) 624
PshBI ATTAAT 1 cut(s) 989
Psp124BI GAGCTC 1 cut(s) 346
Psp1406I AACGTT 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 5 cut(s) 19, 151, 523, 607, 982
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 5 cut(s) 19, 151, 523, 607, 982
PspN4I GGNNCC 1 cut(s) 146
PspPI GGNCC 2 cut(s) 145, 228
PspPPI RGGWCCY 1 cut(s) 145
PstNI CAGNNNCTG 3 cut(s) 248, 923, 1096
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 5 cut(s) 185, 254, 300, 874, 883
RsaNI GTAC 5 cut(s) 184, 253, 299, 873, 882
SacI GAGCTC 1 cut(s) 346
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 3 cut(s) 687, 707, 989
SatI GCNGC 8 cut(s) 741, 744, 768, 771, 918, 921, 980, 1079
Sau3AI GATC 8 cut(s) 121, 672, 779, 905, 934, 1009, 1057, 1062
Sau96I GGNCC 2 cut(s) 145, 228
ScaI AGTACT 1 cut(s) 874
SchI GAGTC 1 cut(s) 1112
ScrFI CCNGG 5 cut(s) 21, 153, 525, 609, 984
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 3 cut(s) 170, 904, 1102
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 2 cut(s) 145, 228
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SnaBI TACGTA 1 cut(s) 60
Sse9I AATT 6 cut(s) 551, 595, 630, 646, 718, 1021
SsiI CCGC 3 cut(s) 506, 743, 1079
SspMI CTAG 6 cut(s) 323, 389, 603, 747, 792, 870
SstI GAGCTC 1 cut(s) 346
StyD4I CCNGG 5 cut(s) 19, 151, 523, 607, 982
StyI CCWWGG 2 cut(s) 140, 347
TaaI ACNGT 1 cut(s) 866
TaiI ACGT 4 cut(s) 62, 497, 564, 591
TaqI TCGA 4 cut(s) 120, 516, 809, 1028
TaqII GACCGA 1 cut(s) 59
TasI AATT 6 cut(s) 551, 595, 630, 646, 718, 1021
TatI WGTACW 2 cut(s) 298, 872
TauI GCSGC 2 cut(s) 746, 1081
TfiI GAWTC 5 cut(s) 10, 30, 518, 811, 1070
Tru1I TTAA 3 cut(s) 687, 707, 989
Tru9I TTAA 3 cut(s) 687, 707, 989
TscAI CASTG 2 cut(s) 871, 1012
TseFI GTSAC 1 cut(s) 1083
TseI GCWGC 6 cut(s) 740, 767, 770, 917, 920, 979
Tsp45I GTSAC 1 cut(s) 1083
TspRI CASTG 2 cut(s) 871, 1012
VpaK11BI GGWCC 2 cut(s) 145, 228
VspI ATTAAT 1 cut(s) 989
XapI RAATTY 3 cut(s) 551, 595, 1021
XceI RCATGY 1 cut(s) 628
XspI CTAG 6 cut(s) 323, 389, 603, 747, 792, 870
ZraI GACGTC 1 cut(s) 495
ZrmI AGTACT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.