Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015159

Physical Location & Seq

Genomic Coordinates Forward (+)

22749614 .. 22752279

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCAAGAGAGTCTTCCTCCAGGTTTCAGATTCCATCCTACAGATGAAGAACTGATAACGCACTATTTGTGCCCCAAGGTTTCTGATGTTAGTTTCACGTCGAAAGCTGTAGCAGACGTTGATCTCAATAAGTGTGAACCTTGGGACCTCCCAGGCAAGGCTTCGATGGGAGAGAAAGAATGGTACTTCTTCAACCTGAGAGACCGAAAATATCCAACTGGGCTTCGAACCAACCGAGCCACGGAAGCCGGGTACTGGAAAACAACTGGGAAAGACAAGGAAATACATCGTACAGGTGTACTGGTTGGGATGAAGAAAACCCTAGTTTTCTACAAGGGCAGAGCTCCTAGGGGTGAGAAAAGCAATTGGGTCATGCATGAATACAGATTAGAAAACAAGCATCCTTTCAATTCCTCAAAGGAAGAATGGGTGGTTTGTAGAGTTTTCCAAAAGAGCATTAGTGCATTGAAAAAGCCACAGCAAGCAACCACATCCTCCCATCAGCAGCCGTCGACAGAATCTCCATGCGACGATACGAACTCAATAGTTAATGAATTCGGAGACATCGAGCTGCCAAACCTAAACAGCAATATTAACGCAAATTCATCCAGCGGGTTCAGCAACAACATTTCCTCAGCCCCAAGCTATTACAGCAATATTATTGATCATAGCAAGAACAACATTAACGACGTTACCAACATGAGTTTGAACATGAATTGGGCAGCAACAGCGGCGAGAGAGGCAGCCGCGAACGCTGTTTCATGGCCATCAAGCTTGTTAAGTCCCTCAAATCTTTCGGTGAATTCGTTGCTTCTTAGGGCATTACATCTTAGTAGTAGTACTAATAATAACGGTAGTAATTATCAACCAAGAGATACTAATCATGGTCAAGCTACAGCAGGCACTAGTACTCTAGATTACTCATCATATAATAATATGCAGCAGCAAGGAATGATGCCGTCAATGTCTCATCACATTGGATCGATCAGTACTACTATGGATCATATAAATTCAAATTTTCAAGCTTCTTCGTCGAGTATTAAAGATCAGATGATGGAATCGATGCCACCACAACAACATTCGGAGCAACCATTCAATTTGGACTCCATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090691 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

372

Amino Acids

41.47

Weight (kDa)

6.5

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	6 - 130	9e-49	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18400
fragaria_vesca	FvH4_5g12090
malus_domestica	MD06G1216500.v1.1 MD14G1226900.v1.1
prunus_persica	Prupe.5G221600_v2.0.a1
pyrus_communis	pycom06g19290 pycom14g18830
rosa_chinensis	RchiOBHm_Chr7g0185481
rosa_laevigata	RLG00000004909
rosa_multiflora	Rmu_sc0010190.1_g000022
rosa_roxburghii	Rroxscaffold_3G00268900
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG073100 Rh7BG074500 Rh7CG074600
rosa_wichuraiana	Rw7G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	512
AccII	CGCG	1 cut(s)	749
AciI	CCGC	3 cut(s)	612, 731, 747
AclWI	GGATC	2 cut(s)	988, 1008
AcoI	YGGCCR	1 cut(s)	764
AcsI	RAATTY	5 cut(s)	554, 601, 802, 1009, 1015
AfaI	GTAC	7 cut(s)	185, 254, 292, 300, 841, 910, 991
AfiI	CCNNNNNNNGG	3 cut(s)	157, 241, 255
AgsI	TTSAA	7 cut(s)	193, 409, 469, 709, 1014, 1022, 1096
AhlI	ACTAGT	1 cut(s)	905
AjiI	CACGTC	1 cut(s)	99
AjnI	CCWGG	2 cut(s)	19, 151
AluBI	AGCT	7 cut(s)	107, 344, 571, 645, 774, 893, 1025
AluI	AGCT	7 cut(s)	107, 344, 571, 645, 774, 893, 1025
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	3 cut(s)	195, 555, 972
AlwI	GGATC	2 cut(s)	988, 1008
AoxI	GGCC	1 cut(s)	764
ApeKI	GCWGC	6 cut(s)	505, 571, 722, 743, 940, 943
ApoI	RAATTY	5 cut(s)	554, 601, 802, 1009, 1015
AspA2I	CCTAGG	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	365, 811
AsuII	TTCGAA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	145
AvrII	CCTAGG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	346
BbvCI	CCTCAGC	1 cut(s)	634
BbvI	GCAGC	6 cut(s)	517, 558, 734, 755, 952, 955
BccI	CCATC	5 cut(s)	42, 160, 507, 775, 1048
BceAI	ACGGC	2 cut(s)	493, 943
BciT130I	CCWGG	2 cut(s)	21, 153
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	3 cut(s)	195, 555, 972
BcuI	ACTAGT	1 cut(s)	905
BfaI	CTAG	4 cut(s)	323, 348, 906, 914
BfmI	CTRYAG	3 cut(s)	39, 108, 894
BisI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 747, 941, 944
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	8 cut(s)	507, 573, 724, 733, 745, 748, 942, 945
BmcAI	AGTACT	3 cut(s)	841, 910, 991
Bme1390I	CCNGG	3 cut(s)	21, 153, 250
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	3 cut(s)	21, 153, 250
BmrI	ACTGGG	2 cut(s)	228, 276
BmsI	GCATC	3 cut(s)	409, 945, 1053
BmuI	ACTGGG	2 cut(s)	228, 276
BpiI	GAAGAC	1 cut(s)	5
BplI	GAGNNNNNCTC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	634
Bpu14I	TTCGAA	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	250
Bsa29I	ATCGAT	2 cut(s)	983, 1061
BsaBI	GATNNNNATC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	5 cut(s)	75, 140, 151, 240, 347
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 241, 255
Bse1I	ACTGG	4 cut(s)	223, 260, 271, 306
Bse8I	GATNNNNATC	1 cut(s)	879
BseBI	CCWGG	2 cut(s)	21, 153
BseCI	ATCGAT	2 cut(s)	983, 1061
BseDI	CCNNGG	5 cut(s)	75, 140, 151, 240, 347
BseGI	GGATG	5 cut(s)	34, 315, 400, 491, 605
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	3 cut(s)	157, 241, 255
BseMII	CTCAG	2 cut(s)	188, 648
BseNI	ACTGG	4 cut(s)	223, 260, 271, 306
BseSI	GKGCMC	1 cut(s)	74
BseXI	GCAGC	6 cut(s)	517, 558, 734, 755, 952, 955
Bsh1236I	CGCG	1 cut(s)	749
BshFI	GGCC	1 cut(s)	766
BshVI	ATCGAT	2 cut(s)	983, 1061
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	2 cut(s)	158, 768
BslI	CCNNNNNNNGG	3 cut(s)	157, 241, 255
BsmAI	GTCTC	3 cut(s)	195, 555, 972
BsmFI	GGGAC	2 cut(s)	158, 768
BsnI	GGCC	1 cut(s)	766
Bso31I	GGTCTC	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	74, 346
Bsp143I	GATC	6 cut(s)	121, 664, 980, 984, 1000, 1045
BspACI	CCGC	3 cut(s)	612, 731, 747
BspANI	GGCC	1 cut(s)	766
BspCNI	CTCAG	2 cut(s)	189, 647
BspDI	ATCGAT	2 cut(s)	983, 1061
BspFNI	CGCG	1 cut(s)	749
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	2 cut(s)	988, 1008
BspT104I	TTCGAA	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	195
BsrI	ACTGG	4 cut(s)	223, 260, 271, 306
BssECI	CCNNGG	5 cut(s)	75, 140, 151, 240, 347
BssMI	GATC	6 cut(s)	121, 664, 980, 984, 1000, 1045
BssT1I	CCWWGG	3 cut(s)	75, 140, 347
Bst2UI	CCWGG	2 cut(s)	21, 153
Bst4CI	ACNGT	1 cut(s)	854
BstBI	TTCGAA	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	483, 901
BstDEI	CTNAG	4 cut(s)	197, 634, 815, 830
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	5 cut(s)	34, 315, 400, 491, 605
BstFNI	CGCG	1 cut(s)	749
BstKTI	GATC	6 cut(s)	124, 667, 983, 987, 1003, 1048
BstMAI	GTCTC	3 cut(s)	195, 555, 972
BstMBI	GATC	6 cut(s)	121, 664, 980, 984, 1000, 1045
BstMWI	GCNNNNNNNGC	7 cut(s)	245, 618, 651, 728, 731, 740, 752
BstNI	CCWGG	2 cut(s)	21, 153
BstSCI	CCNGG	3 cut(s)	19, 151, 248
BstSFI	CTRYAG	3 cut(s)	39, 108, 894
BstSLI	GKGCMC	1 cut(s)	74
BstUI	CGCG	1 cut(s)	749
BstV1I	GCAGC	6 cut(s)	517, 558, 734, 755, 952, 955
BstV2I	GAAGAC	1 cut(s)	5
Bsu15I	ATCGAT	2 cut(s)	983, 1061
BsuRI	GGCC	1 cut(s)	766
BsuTUI	ATCGAT	2 cut(s)	983, 1061
BtgI	CCRYGG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	99
BtsCI	GGATG	5 cut(s)	34, 315, 400, 491, 605
Cac8I	GCNNGC	2 cut(s)	483, 901
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	2 cut(s)	983, 1061
Csp6I	GTAC	7 cut(s)	184, 253, 291, 299, 840, 909, 990
CviAII	CATG	7 cut(s)	373, 377, 525, 700, 712, 762, 884
CviQI	GTAC	7 cut(s)	184, 253, 291, 299, 840, 909, 990
DdeI	CTNAG	4 cut(s)	197, 634, 815, 830
DpnI	GATC	6 cut(s)	123, 666, 982, 986, 1002, 1047
DpnII	GATC	6 cut(s)	121, 664, 980, 984, 1000, 1045
EaeI	YGGCCR	1 cut(s)	764
Ecl136II	GAGCTC	1 cut(s)	344
Eco130I	CCWWGG	3 cut(s)	75, 140, 347
Eco24I	GRGCYC	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	2 cut(s)	554, 802
EcoRII	CCWGG	2 cut(s)	19, 151
EcoT14I	CCWWGG	3 cut(s)	75, 140, 347
EcoT22I	ATGCAT	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	3 cut(s)	75, 140, 347
FaeI	CATG	7 cut(s)	376, 380, 528, 703, 715, 765, 887
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	2 cut(s)	158, 768
FatI	CATG	7 cut(s)	372, 376, 524, 699, 711, 761, 883
FauI	CCCGC	1 cut(s)	605
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 747, 941, 944
FokI	GGATG	5 cut(s)	21, 322, 387, 478, 592
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 747, 941, 944
FspBI	CTAG	4 cut(s)	323, 348, 906, 914
GluI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 747, 941, 944
HaeIII	GGCC	1 cut(s)	766
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	7 cut(s)	376, 380, 528, 703, 715, 765, 887
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	2 cut(s)	772, 1023
HinfI	GANTC	5 cut(s)	10, 30, 518, 1058, 1103
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	365, 811
Hpy166II	GTNNAC	3 cut(s)	137, 299, 513
Hpy188I	TCNGA	5 cut(s)	29, 85, 560, 1050, 1084
Hpy188III	TCNNGA	1 cut(s)	914
Hpy8I	GTNNAC	3 cut(s)	137, 299, 513
Hpy99I	CGWCG	5 cut(s)	103, 514, 533, 692, 1036
HpyCH4III	ACNGT	1 cut(s)	854
HpyCH4IV	ACGT	3 cut(s)	98, 117, 690
HpyCH4V	TGCA	4 cut(s)	4, 376, 464, 940
HpyF10VI	GCNNNNNNNGC	7 cut(s)	245, 618, 651, 728, 731, 740, 752
HpyF3I	CTNAG	4 cut(s)	197, 634, 815, 830
HpySE526I	ACGT	3 cut(s)	98, 117, 690
Hsp92II	CATG	7 cut(s)	376, 380, 528, 703, 715, 765, 887
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	6 cut(s)	121, 664, 980, 984, 1000, 1045
LmnI	GCTCC	2 cut(s)	349, 1084
Lsp1109I	GCAGC	6 cut(s)	517, 558, 734, 755, 952, 955
LweI	GCATC	3 cut(s)	409, 945, 1053
MaeI	CTAG	4 cut(s)	323, 348, 906, 914
MaeII	ACGT	3 cut(s)	98, 117, 690
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	6 cut(s)	123, 666, 982, 986, 1002, 1047
MboI	GATC	6 cut(s)	121, 664, 980, 984, 1000, 1045
MboII	GAAGA	6 cut(s)	5, 59, 181, 325, 434, 1020
MfeI	CAATTG	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	74, 346
MlsI	TGGCCA	1 cut(s)	766
MluNI	TGGCCA	1 cut(s)	766
MlyI	GAGTC	2 cut(s)	19, 1097
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	7 cut(s)	27, 158, 424, 505, 643, 733, 796
Mox20I	TGGCCA	1 cut(s)	766
Mph1103I	ATGCAT	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	766
MseI	TTAA	5 cut(s)	549, 594, 684, 779, 1041
Msp20I	TGGCCA	1 cut(s)	766
MspA1I	CMGCKG	2 cut(s)	612, 731
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	3 cut(s)	21, 153, 250
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	2 cut(s)	21, 153
MvnI	CGCG	1 cut(s)	749
MwoI	GCNNNNNNNGC	7 cut(s)	245, 618, 651, 728, 731, 740, 752
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	6 cut(s)	121, 664, 980, 984, 1000, 1045
NlaIII	CATG	7 cut(s)	376, 380, 528, 703, 715, 765, 887
NlaIV	GGNNCC	1 cut(s)	146
NsiI	ATGCAT	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	3 cut(s)	232, 564, 803
PfeI	GAWTC	3 cut(s)	30, 518, 1058
PkrI	GCNGC	8 cut(s)	507, 573, 724, 733, 745, 748, 942, 945
PleI	GAGTC	2 cut(s)	18, 1097
PpsI	GAGTC	2 cut(s)	18, 1097
PpuMI	RGGWCCY	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	19, 151
PspGI	CCWGG	2 cut(s)	19, 151
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
RsaI	GTAC	7 cut(s)	185, 254, 292, 300, 841, 910, 991
RsaNI	GTAC	7 cut(s)	184, 253, 291, 299, 840, 909, 990
SacI	GAGCTC	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	511
SaqAI	TTAA	5 cut(s)	549, 594, 684, 779, 1041
SatI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 747, 941, 944
Sau3AI	GATC	6 cut(s)	121, 664, 980, 984, 1000, 1045
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	3 cut(s)	841, 910, 991
SchI	GAGTC	2 cut(s)	19, 1097
ScrFI	CCNGG	3 cut(s)	21, 153, 250
SduI	GDGCHC	2 cut(s)	74, 346
SfaNI	GCATC	3 cut(s)	409, 945, 1053
SfcI	CTRYAG	3 cut(s)	39, 108, 894
SfuI	TTCGAA	1 cut(s)	226
SinI	GGWCC	1 cut(s)	145
SpeI	ACTAGT	1 cut(s)	905
SsiI	CCGC	3 cut(s)	612, 731, 747
SspI	AATATT	2 cut(s)	592, 658
SspMI	CTAG	4 cut(s)	323, 348, 906, 914
SstI	GAGCTC	1 cut(s)	346
StyD4I	CCNGG	3 cut(s)	19, 151, 248
StyI	CCWWGG	3 cut(s)	75, 140, 347
TaaI	ACNGT	1 cut(s)	854
TaiI	ACGT	3 cut(s)	101, 120, 693
TaqI	TCGA	8 cut(s)	101, 164, 226, 512, 567, 983, 1034, 1061
TaqII	GACCGA	1 cut(s)	219
TatI	WGTACW	4 cut(s)	298, 839, 908, 989
TauI	GCSGC	2 cut(s)	734, 749
TfiI	GAWTC	3 cut(s)	30, 518, 1058
Tru1I	TTAA	5 cut(s)	549, 594, 684, 779, 1041
Tru9I	TTAA	5 cut(s)	549, 594, 684, 779, 1041
TseI	GCWGC	6 cut(s)	505, 571, 722, 743, 940, 943
TspDTI	ATGAA	7 cut(s)	60, 326, 393, 567, 594, 728, 750
TspGWI	ACGGA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	5 cut(s)	554, 601, 802, 1009, 1015
XbaI	TCTAGA	1 cut(s)	913
XmaJI	CCTAGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	512
XspI	CTAG	4 cut(s)	323, 348, 906, 914
ZrmI	AGTACT	3 cut(s)	841, 910, 991
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.