Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015159

Physical Location & Seq

Genomic Coordinates Forward (+)

34880837 .. 34883456

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1216500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCAAGAGAGTCTTCCTCCAGGTTTCAGATTCCATCCTACAGATGAAGAACTGATAACGCACTATTTGTGCCATAAGGTTTCTGATGTTAGTTTCACGTCGAAGGCTGTAGCAGACGTTGATCTCAATAAGTGTGAACCTTGGGACCTCCCAGGCAAGGCTTCGATGGGAGAGAAAGAATGGTACTTCTTCAACCTGAGAGACCGAAAATATCCAACTGGACTTCGAACCAACCGAGCCACGGAAGCCGGGTACTGGAAAACAACTGGGAAAGACAAGGAAATACATCGTACAGGTGTACTGGTTGGGATGAAGAAAACCCTAGTTTTCTACAAGGGCAGAGCTCCTAGGGGTGAGAAAAGCAATTGGGTCATGCATGAATACAGACTAGAAAACAAGCATCCTTTCAAATCCTCAAAGGAAGAATGGGTGGTTTGTAGAGTTTTCCAAAAGAGCATTAGTGCATTGAAAAAGCCACAGCAAGCAACCACATCCTCCCATCAGCAGCCGTCGATAGAATCTCCATGCGACGATACGAACTCAATCGTTAACGAATTCGGAGACATCGAGCTGCCAAACCTAAACAGCAATATTAACGCAAATTCATCCAGCGGGTTCAGCAACAACATTTCCTCACCCCCAAGCTATTACAGCAATATTATTGATCATAGCAAGAACAACATTAACGACGTTACCAACATGAGTTTGAACATGAATTGGGCAGCAACAGCGGCGAGAGAGGCAGCCGTGAACGCCGTTTCATGGCCGTCAAGCTTGCTAAGTCCCTCAAATCTTTCGGTGAATTCGTTGCTTCTTAGGGCATTACATCTTAGGAGTAGTACTAATAATAACGGTAGTAATTATCAACCAAGAGATACTAATCATGGTCAAGCTACAGCAGGCACTAGTACTCTAGATTACTCATCATATAATACTATGCAGCAGCAAGGAATGATGCCGTCAATCTCTCATCACATTGGATCCAGTACTACTATGGATCATATAAATTCAAATTTTCAAGCTTCTTCGTCGAGTATTAAAGATCAGATGATGGAATCGATGCCGCCACAACAACATTCGGAGCAACCATTCAATTTGGACTCCATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090691 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

371

Amino Acids

41.52

Weight (kDa)

6.92

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	6 - 130	1e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18400
fragaria_vesca	FvH4_5g12090
malus_domestica	MD06G1216500.v1.1 MD14G1226900.v1.1
prunus_persica	Prupe.5G221600_v2.0.a1
pyrus_communis	pycom06g19290 pycom14g18830
rosa_chinensis	RchiOBHm_Chr7g0185481
rosa_laevigata	RLG00000004909
rosa_multiflora	Rmu_sc0010190.1_g000022
rosa_roxburghii	Rroxscaffold_3G00268900
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG073100 Rh7BG074500 Rh7CG074600
rosa_wichuraiana	Rw7G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	612, 731, 1064
AclWI	GGATC	3 cut(s)	975, 988, 1005
AcoI	YGGCCR	1 cut(s)	764
AcsI	RAATTY	5 cut(s)	554, 601, 802, 1006, 1012
AfaI	GTAC	7 cut(s)	185, 254, 292, 300, 841, 910, 988
AfiI	CCNNNNNNNGG	4 cut(s)	157, 241, 255, 762
AgsI	TTSAA	7 cut(s)	193, 409, 469, 709, 1011, 1019, 1093
AhlI	ACTAGT	1 cut(s)	905
AjiI	CACGTC	1 cut(s)	99
AjnI	CCWGG	2 cut(s)	19, 151
AluBI	AGCT	6 cut(s)	344, 571, 645, 774, 893, 1022
AluI	AGCT	6 cut(s)	344, 571, 645, 774, 893, 1022
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	2 cut(s)	195, 555
AlwI	GGATC	3 cut(s)	975, 988, 1005
AoxI	GGCC	1 cut(s)	764
ApeKI	GCWGC	6 cut(s)	505, 571, 722, 743, 940, 943
ApoI	RAATTY	5 cut(s)	554, 601, 802, 1006, 1012
AspA2I	CCTAGG	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	3 cut(s)	365, 627, 811
AsuII	TTCGAA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	145
AvrII	CCTAGG	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	980
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	6 cut(s)	517, 558, 734, 755, 952, 955
BccI	CCATC	4 cut(s)	42, 160, 507, 1045
BceAI	ACGGC	5 cut(s)	493, 731, 740, 751, 943
BciT130I	CCWGG	2 cut(s)	21, 153
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	195, 555
BcuI	ACTAGT	1 cut(s)	905
BfaI	CTAG	5 cut(s)	323, 348, 389, 906, 914
BfmI	CTRYAG	3 cut(s)	39, 108, 894
BisI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 941, 944, 1064
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	8 cut(s)	507, 573, 724, 733, 745, 942, 945, 1065
BmcAI	AGTACT	3 cut(s)	841, 910, 988
Bme1390I	CCNGG	3 cut(s)	21, 153, 250
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	146, 982
BmrFI	CCNGG	3 cut(s)	21, 153, 250
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	3 cut(s)	409, 945, 1050
BmuI	ACTGGG	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	5
BplI	GAGNNNNNCTC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	1058
BsaBI	GATNNNNATC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	140, 151, 240, 347
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 241, 255, 762
Bse1I	ACTGG	5 cut(s)	223, 260, 271, 306, 984
Bse8I	GATNNNNATC	1 cut(s)	879
BseBI	CCWGG	2 cut(s)	21, 153
BseCI	ATCGAT	1 cut(s)	1058
BseDI	CCNNGG	4 cut(s)	140, 151, 240, 347
BseGI	GGATG	5 cut(s)	34, 315, 400, 491, 605
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	4 cut(s)	157, 241, 255, 762
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	5 cut(s)	223, 260, 271, 306, 984
BseXI	GCAGC	6 cut(s)	517, 558, 734, 755, 952, 955
BshFI	GGCC	1 cut(s)	766
BshVI	ATCGAT	1 cut(s)	1058
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	2 cut(s)	158, 768
BslI	CCNNNNNNNGG	4 cut(s)	157, 241, 255, 762
BsmAI	GTCTC	2 cut(s)	195, 555
BsmFI	GGGAC	2 cut(s)	158, 768
BsnI	GGCC	1 cut(s)	766
Bso31I	GGTCTC	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	5 cut(s)	121, 664, 980, 997, 1042
BspACI	CCGC	3 cut(s)	612, 731, 1064
BspANI	GGCC	1 cut(s)	766
BspCNI	CTCAG	1 cut(s)	189
BspDI	ATCGAT	1 cut(s)	1058
BspLI	GGNNCC	2 cut(s)	146, 982
BspPI	GGATC	3 cut(s)	975, 988, 1005
BspT104I	TTCGAA	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	195
BsrI	ACTGG	5 cut(s)	223, 260, 271, 306, 984
BssECI	CCNNGG	4 cut(s)	140, 151, 240, 347
BssMI	GATC	5 cut(s)	121, 664, 980, 997, 1042
BssT1I	CCWWGG	2 cut(s)	140, 347
Bst2UI	CCWGG	2 cut(s)	21, 153
Bst4CI	ACNGT	1 cut(s)	854
BstBI	TTCGAA	1 cut(s)	226
BstC8I	GCNNGC	3 cut(s)	483, 776, 901
BstDEI	CTNAG	4 cut(s)	197, 779, 815, 830
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	5 cut(s)	34, 315, 400, 491, 605
BstKTI	GATC	5 cut(s)	124, 667, 983, 1000, 1045
BstMAI	GTCTC	2 cut(s)	195, 555
BstMBI	GATC	5 cut(s)	121, 664, 980, 997, 1042
BstMWI	GCNNNNNNNGC	7 cut(s)	245, 618, 651, 728, 731, 740, 752
BstNI	CCWGG	2 cut(s)	21, 153
BstSCI	CCNGG	3 cut(s)	19, 151, 248
BstSFI	CTRYAG	3 cut(s)	39, 108, 894
BstV1I	GCAGC	6 cut(s)	517, 558, 734, 755, 952, 955
BstV2I	GAAGAC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	980
BstYI	RGATCY	1 cut(s)	980
Bsu15I	ATCGAT	1 cut(s)	1058
BsuRI	GGCC	1 cut(s)	766
BsuTUI	ATCGAT	1 cut(s)	1058
BtgI	CCRYGG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	99
BtsCI	GGATG	5 cut(s)	34, 315, 400, 491, 605
Cac8I	GCNNGC	3 cut(s)	483, 776, 901
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	1058
Csp6I	GTAC	7 cut(s)	184, 253, 291, 299, 840, 909, 987
CviAII	CATG	7 cut(s)	373, 377, 525, 700, 712, 762, 884
CviQI	GTAC	7 cut(s)	184, 253, 291, 299, 840, 909, 987
DdeI	CTNAG	4 cut(s)	197, 779, 815, 830
DpnI	GATC	5 cut(s)	123, 666, 982, 999, 1044
DpnII	GATC	5 cut(s)	121, 664, 980, 997, 1042
EaeI	YGGCCR	1 cut(s)	764
Ecl136II	GAGCTC	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	140, 347
Eco24I	GRGCYC	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	2 cut(s)	554, 802
EcoRII	CCWGG	2 cut(s)	19, 151
EcoT14I	CCWWGG	2 cut(s)	140, 347
EcoT22I	ATGCAT	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	140, 347
FaeI	CATG	7 cut(s)	376, 380, 528, 703, 715, 765, 887
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	2 cut(s)	158, 768
FatI	CATG	7 cut(s)	372, 376, 524, 699, 711, 761, 883
FauI	CCCGC	1 cut(s)	605
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 941, 944, 1064
FokI	GGATG	5 cut(s)	21, 322, 387, 478, 592
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 941, 944, 1064
FspBI	CTAG	5 cut(s)	323, 348, 389, 906, 914
GluI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 941, 944, 1064
HaeIII	GGCC	1 cut(s)	766
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	7 cut(s)	376, 380, 528, 703, 715, 765, 887
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	2 cut(s)	772, 1020
HinfI	GANTC	5 cut(s)	10, 30, 518, 1055, 1100
HpaI	GTTAAC	1 cut(s)	550
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	365, 627, 811
Hpy166II	GTNNAC	4 cut(s)	137, 299, 550, 751
Hpy188I	TCNGA	5 cut(s)	29, 85, 560, 1047, 1081
Hpy188III	TCNNGA	1 cut(s)	914
Hpy8I	GTNNAC	4 cut(s)	137, 299, 550, 751
Hpy99I	CGWCG	5 cut(s)	103, 514, 533, 692, 1033
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	854
HpyCH4IV	ACGT	3 cut(s)	98, 117, 690
HpyCH4V	TGCA	4 cut(s)	4, 376, 464, 940
HpyF10VI	GCNNNNNNNGC	7 cut(s)	245, 618, 651, 728, 731, 740, 752
HpyF3I	CTNAG	4 cut(s)	197, 779, 815, 830
HpySE526I	ACGT	3 cut(s)	98, 117, 690
Hsp92II	CATG	7 cut(s)	376, 380, 528, 703, 715, 765, 887
Ksp22I	TGATCA	1 cut(s)	664
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	5 cut(s)	121, 664, 980, 997, 1042
LmnI	GCTCC	2 cut(s)	349, 1081
Lsp1109I	GCAGC	6 cut(s)	517, 558, 734, 755, 952, 955
LweI	GCATC	3 cut(s)	409, 945, 1050
MaeI	CTAG	5 cut(s)	323, 348, 389, 906, 914
MaeII	ACGT	3 cut(s)	98, 117, 690
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	5 cut(s)	123, 666, 982, 999, 1044
MboI	GATC	5 cut(s)	121, 664, 980, 997, 1042
MboII	GAAGA	6 cut(s)	5, 59, 181, 325, 434, 1017
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	1 cut(s)	980
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	9 cut(s)	364, 554, 601, 715, 802, 859, 1006, 1012, 1093
MlyI	GAGTC	2 cut(s)	19, 1094
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	7 cut(s)	27, 158, 424, 505, 643, 733, 796
Mph1103I	ATGCAT	1 cut(s)	378
MseI	TTAA	4 cut(s)	549, 594, 684, 1038
MspA1I	CMGCKG	2 cut(s)	612, 731
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	3 cut(s)	21, 153, 250
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	2 cut(s)	21, 153
MwoI	GCNNNNNNNGC	7 cut(s)	245, 618, 651, 728, 731, 740, 752
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	5 cut(s)	121, 664, 980, 997, 1042
NlaIII	CATG	7 cut(s)	376, 380, 528, 703, 715, 765, 887
NlaIV	GGNNCC	2 cut(s)	146, 982
NsiI	ATGCAT	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	3 cut(s)	232, 564, 803
PfeI	GAWTC	3 cut(s)	30, 518, 1055
PkrI	GCNGC	8 cut(s)	507, 573, 724, 733, 745, 942, 945, 1065
PleI	GAGTC	2 cut(s)	18, 1094
PpsI	GAGTC	2 cut(s)	18, 1094
PpuMI	RGGWCCY	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	19, 151
PspGI	CCWGG	2 cut(s)	19, 151
PspN4I	GGNNCC	2 cut(s)	146, 982
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	980
RsaI	GTAC	7 cut(s)	185, 254, 292, 300, 841, 910, 988
RsaNI	GTAC	7 cut(s)	184, 253, 291, 299, 840, 909, 987
SacI	GAGCTC	1 cut(s)	346
SaqAI	TTAA	4 cut(s)	549, 594, 684, 1038
SatI	GCNGC	8 cut(s)	506, 572, 723, 732, 744, 941, 944, 1064
Sau3AI	GATC	5 cut(s)	121, 664, 980, 997, 1042
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	3 cut(s)	841, 910, 988
SchI	GAGTC	2 cut(s)	19, 1094
ScrFI	CCNGG	3 cut(s)	21, 153, 250
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	3 cut(s)	409, 945, 1050
SfcI	CTRYAG	3 cut(s)	39, 108, 894
SfuI	TTCGAA	1 cut(s)	226
SinI	GGWCC	1 cut(s)	145
SpeI	ACTAGT	1 cut(s)	905
Sse9I	AATT	9 cut(s)	364, 554, 601, 715, 802, 859, 1006, 1012, 1093
SsiI	CCGC	3 cut(s)	612, 731, 1064
SspI	AATATT	2 cut(s)	592, 658
SspMI	CTAG	5 cut(s)	323, 348, 389, 906, 914
SstI	GAGCTC	1 cut(s)	346
StyD4I	CCNGG	3 cut(s)	19, 151, 248
StyI	CCWWGG	2 cut(s)	140, 347
TaaI	ACNGT	1 cut(s)	854
TaiI	ACGT	3 cut(s)	101, 120, 693
TaqI	TCGA	7 cut(s)	101, 164, 226, 512, 567, 1031, 1058
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	9 cut(s)	364, 554, 601, 715, 802, 859, 1006, 1012, 1093
TatI	WGTACW	4 cut(s)	298, 839, 908, 986
TauI	GCSGC	2 cut(s)	734, 1066
TfiI	GAWTC	3 cut(s)	30, 518, 1055
Tru1I	TTAA	4 cut(s)	549, 594, 684, 1038
Tru9I	TTAA	4 cut(s)	549, 594, 684, 1038
TseI	GCWGC	6 cut(s)	505, 571, 722, 743, 940, 943
TspDTI	ATGAA	6 cut(s)	60, 326, 393, 594, 728, 750
TspGWI	ACGGA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	5 cut(s)	554, 601, 802, 1006, 1012
XbaI	TCTAGA	1 cut(s)	913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	991
XmaJI	CCTAGG	1 cut(s)	347
XspI	CTAG	5 cut(s)	323, 348, 389, 906, 914
ZrmI	AGTACT	3 cut(s)	841, 910, 988
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.