Rh7BG074500

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015159
Physical Location & Seq
Forward (+)
5048643 .. 5050943
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG074500.1

Sequence Viewer

Length: 1125 bp
ATGCAGGAGAATCTTCCTCCTGGGTTCAGATTCCATCCTACAGATGAAGAACTGATTACGTACTATCTCGGGCGCAAGGTTTCTGATGTTAGCTTCACATCACAAGCCGTAGCAGTTGTCGATCTCAATAAGTGTGAACCTTGGGACCTCCCAGGCAAGGCTTCGATGGGAGAGAAAGAATGGTATTTCTTCAACTTAAGAGACCGAAAATACCCTACTGGACTTCGGACCAACCGAGCCACAGAAGCAGGGTATTGGAAGACAACGGGCAAAGACAAAGAAATACTTCGTCAAGGGGTACTCGTTGGAATGAAGAAAACCCTAGTTTTCTACAGGGGTAGAGCTCCAAGGGGTGAGAAAACCAACTGGGTCATGCACGAATACAGACTAGAAAACAAGCACCATCCCTTCAAATCCTCAACCTCAAAGGAAGAATGGGTGGTTTGTAGGGTGTTTCAGAAGAGCATAGCCTTGAAAAAACCACAGCAAATTACATCTTCCTCACCGCAATCTGTCGATTCTCTTGGCGAGACAAACTCAATGGTAAATGAATTTGGAGATGTGGAGTTGCCAAATTTTATGAACAACATTGCAAATTCATCTAGTACTGGGTTCATCAGCAACAACATGTCAATTCCAGGAGGCAACAATTACAACGTTATTGATAATAAGAGAATCAATAATGATGTTAACATGATCAGCACTACTTTAAACATGAATAATTGGCTCGGGGCGAGAGAGGCGGCGGCTAGTGGTGCCATTCTTCCTGCAGCAGCACTCGGATCATGGCCATCTAGCTTGCTAAGTCCATCGAATCTTTCGTCAGTGAACTCCTTGCTACTTAGGGCATTACAACTTAGGAGTAGCAGTGCTAGTACTAATAGTACCATCTATCAGCAACCGATTAGAGATGCTACAGCAGCTGGTCTAGAAGATCATTACTCCTCTTTCATGGCGGCGCAACAGCAACAGCAGCCTGGATTAATGTCTCACTTTGGCACTGATCATAACATGAATTCGTCAAATTTGCAAGCCTCTTCATCATCTAAGGATCAGATCATGGATTCCGTGCCGCAGTCACAACAGCATCCGGAGCAACCATTCAACTTGGACTCCATATGGTGA

Protein Analysis

374

Amino Acids

41.73

Weight (kDa)

7.77

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 130 1.9e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18400
fragaria_vesca FvH4_5g12090
malus_domestica MD06G1216500.v1.1 MD14G1226900.v1.1
prunus_persica Prupe.5G221600_v2.0.a1
pyrus_communis pycom06g19290 pycom14g18830
rosa_chinensis RchiOBHm_Chr7g0185481
rosa_laevigata RLG00000004909
rosa_multiflora Rmu_sc0010190.1_g000022
rosa_roxburghii Rroxscaffold_3G00268900
rosa_rugosa Rorug06G0469800
rosa_samantha Rh7AG073100 Rh7BG074500 Rh7CG074600
rosa_wichuraiana Rw7G006200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 755
AccIII TCCGGA 1 cut(s) 1090
AciI CCGC 5 cut(s) 506, 743, 746, 956, 1073
AclI AACGTT 1 cut(s) 657
AclWI GGATC 2 cut(s) 790, 1059
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 5 cut(s) 551, 574, 595, 1015, 1024
AfaI GTAC 5 cut(s) 62, 300, 607, 877, 886
AfiI CCNNNNNNNGG 1 cut(s) 157
AflII CTTAAG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 4 cut(s) 193, 412, 475, 1105
AjnI CCWGG 4 cut(s) 19, 151, 637, 976
AluBI AGCT 4 cut(s) 93, 344, 798, 923
AluI AGCT 4 cut(s) 93, 344, 798, 923
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 195, 524, 993
AlwI GGATC 2 cut(s) 790, 1059
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 2 cut(s) 68, 728
Aor13HI TCCGGA 1 cut(s) 1090
AoxI GGCC 1 cut(s) 788
ApeKI GCWGC 4 cut(s) 770, 773, 920, 973
ApoI RAATTY 5 cut(s) 551, 574, 595, 1015, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AseI ATTAAT 1 cut(s) 983
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 2 cut(s) 75, 961
AspS9I GGNCC 2 cut(s) 145, 228
AsuHPI GGTGA 2 cut(s) 365, 495
AvaI CYCGRG 2 cut(s) 68, 728
AvaII GGWCC 2 cut(s) 145, 228
BalI TGGCCA 1 cut(s) 790
BanI GGYRCC 1 cut(s) 755
BanII GRGCYC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 4 cut(s) 782, 785, 932, 985
BccI CCATC 6 cut(s) 42, 160, 411, 799, 817, 896
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 4 cut(s) 21, 153, 639, 978
BclI TGATCA 2 cut(s) 696, 1003
BcoDI GTCTC 3 cut(s) 195, 524, 993
BfaI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
BfmI CTRYAG 4 cut(s) 39, 331, 768, 915
BfrI CTTAAG 1 cut(s) 196
BisI GCNGC 8 cut(s) 744, 747, 771, 774, 921, 957, 974, 1073
BlsI GCNGC 8 cut(s) 745, 748, 772, 775, 922, 958, 975, 1074
BmcAI AGTACT 2 cut(s) 607, 877
Bme1390I CCNGG 4 cut(s) 21, 153, 639, 978
Bme18I GGWCC 2 cut(s) 145, 228
BmeT110I CYCGRG 2 cut(s) 68, 728
BmgT120I GGNCC 2 cut(s) 145, 228
BmiI GGNNCC 2 cut(s) 146, 757
BmrFI CCNGG 4 cut(s) 21, 153, 639, 978
BmrI ACTGGG 2 cut(s) 376, 618
BmsI GCATC 2 cut(s) 901, 1096
BmuI ACTGGG 2 cut(s) 376, 618
BpiI GAAGAC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BsaAI YACGTR 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 20, 140, 151, 347
BsaWI WCCGGW 1 cut(s) 1090
BsaXI ACNNNNNCTCC 3 cut(s) 853, 883, 1097
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 223, 371, 613
Bse3DI GCAATG 1 cut(s) 588
BseAI TCCGGA 1 cut(s) 1090
BseBI CCWGG 4 cut(s) 21, 153, 639, 978
BseDI CCNNGG 4 cut(s) 20, 140, 151, 347
BseGI GGATG 3 cut(s) 34, 403, 1087
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 588
BseNI ACTGG 3 cut(s) 223, 371, 613
BseRI GAGGAG 1 cut(s) 934
BseXI GCAGC 4 cut(s) 782, 785, 932, 985
BshFI GGCC 1 cut(s) 790
BshNI GGYRCC 1 cut(s) 755
BsiHKAI GWGCWC 1 cut(s) 346
BsiHKCI CYCGRG 2 cut(s) 68, 728
BsiSI CCGG 1 cut(s) 1091
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 3 cut(s) 195, 524, 993
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 790
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 2 cut(s) 68, 728
Bsp1286I GDGCHC 1 cut(s) 346
Bsp13I TCCGGA 1 cut(s) 1090
Bsp143I GATC 7 cut(s) 121, 696, 782, 934, 1003, 1051, 1056
BspACI CCGC 5 cut(s) 506, 743, 746, 956, 1073
BspANI GGCC 1 cut(s) 790
BspEI TCCGGA 1 cut(s) 1090
BspLI GGNNCC 2 cut(s) 146, 757
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 2 cut(s) 790, 1059
BspQI GCTCTTC 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 755
BspTI CTTAAG 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 588
BsrI ACTGG 3 cut(s) 223, 371, 613
BssECI CCNNGG 4 cut(s) 20, 140, 151, 347
BssMI GATC 7 cut(s) 121, 696, 782, 934, 1003, 1051, 1056
BssT1I CCWWGG 2 cut(s) 140, 347
Bst2UI CCWGG 4 cut(s) 21, 153, 639, 978
Bst6I CTCTTC 2 cut(s) 455, 1042
BstAFI CTTAAG 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 800, 1032
BstDEI CTNAG 4 cut(s) 803, 842, 857, 1047
BstF5I GGATG 3 cut(s) 34, 403, 1087
BstHHI GCGC 2 cut(s) 75, 961
BstKTI GATC 7 cut(s) 124, 699, 785, 937, 1006, 1054, 1059
BstMAI GTCTC 3 cut(s) 195, 524, 993
BstMBI GATC 7 cut(s) 121, 696, 782, 934, 1003, 1051, 1056
BstMWI GCNNNNNNNGC 6 cut(s) 245, 740, 755, 920, 973, 1093
BstNI CCWGG 4 cut(s) 21, 153, 639, 978
BstNSI RCATGY 1 cut(s) 631
BstSCI CCNGG 4 cut(s) 19, 151, 637, 976
BstSFI CTRYAG 4 cut(s) 39, 331, 768, 915
BstSNI TACGTA 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 782, 785, 932, 985
BstV2I GAAGAC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 790
BtsCI GGATG 3 cut(s) 34, 403, 1087
BtsI GCAGTG 1 cut(s) 874
BtsIMutI CAGTG 3 cut(s) 831, 874, 999
Cac8I GCNNGC 2 cut(s) 800, 1032
CaiI CAGNNNCTG 1 cut(s) 923
CfoI GCGC 2 cut(s) 75, 961
Cfr13I GGNCC 2 cut(s) 145, 228
Csp6I GTAC 5 cut(s) 61, 299, 606, 876, 885
CviAII CATG 8 cut(s) 373, 628, 694, 715, 786, 952, 1012, 1060
CviQI GTAC 5 cut(s) 61, 299, 606, 876, 885
DdeI CTNAG 4 cut(s) 803, 842, 857, 1047
DpnI GATC 7 cut(s) 123, 698, 784, 936, 1005, 1053, 1058
DpnII GATC 7 cut(s) 121, 696, 782, 934, 1003, 1051, 1056
DraI TTTAAA 1 cut(s) 711
EaeI YGGCCR 1 cut(s) 788
Eam1104I CTCTTC 2 cut(s) 455, 1042
EarI CTCTTC 2 cut(s) 455, 1042
Ecl136II GAGCTC 1 cut(s) 344
Eco105I TACGTA 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 140, 347
Eco24I GRGCYC 1 cut(s) 346
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 145, 228
Eco53kI GAGCTC 1 cut(s) 344
Eco88I CYCGRG 2 cut(s) 68, 728
EcoICRI GAGCTC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 1015
EcoRII CCWGG 4 cut(s) 19, 151, 637, 976
EcoT14I CCWWGG 2 cut(s) 140, 347
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 2 cut(s) 140, 347
FaeI CATG 8 cut(s) 376, 631, 697, 718, 789, 955, 1015, 1063
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 1 cut(s) 158
FatI CATG 8 cut(s) 372, 627, 693, 714, 785, 951, 1011, 1059
FauNDI CATATG 1 cut(s) 1118
FbaI TGATCA 2 cut(s) 696, 1003
Fnu4HI GCNGC 8 cut(s) 744, 747, 771, 774, 921, 957, 974, 1073
FokI GGATG 3 cut(s) 21, 390, 1074
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 8 cut(s) 744, 747, 771, 774, 921, 957, 974, 1073
FspBI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
GlaI GCGC 2 cut(s) 74, 960
GluI GCNGC 8 cut(s) 744, 747, 771, 774, 921, 957, 974, 1073
HaeIII GGCC 1 cut(s) 790
HapII CCGG 1 cut(s) 1091
HhaI GCGC 2 cut(s) 75, 961
Hin1II CATG 8 cut(s) 376, 631, 697, 718, 789, 955, 1015, 1063
Hin6I GCGC 2 cut(s) 73, 959
HinP1I GCGC 2 cut(s) 73, 959
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HinfI GANTC 7 cut(s) 10, 30, 518, 675, 814, 1064, 1112
HpaI GTTAAC 1 cut(s) 691
HpaII CCGG 1 cut(s) 1091
HphI GGTGA 2 cut(s) 365, 495
Hpy166II GTNNAC 3 cut(s) 137, 691, 829
Hpy188I TCNGA 6 cut(s) 29, 85, 228, 459, 782, 1056
Hpy188III TCNNGA 2 cut(s) 929, 1091
Hpy8I GTNNAC 3 cut(s) 137, 691, 829
HpyAV CCTTC 1 cut(s) 418
HpyCH4IV ACGT 2 cut(s) 59, 657
HpyCH4V TGCA 5 cut(s) 4, 376, 593, 770, 1030
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 740, 755, 920, 973, 1093
HpyF3I CTNAG 4 cut(s) 803, 842, 857, 1047
HpySE526I ACGT 2 cut(s) 59, 657
Hsp92II CATG 8 cut(s) 376, 631, 697, 718, 789, 955, 1015, 1063
HspAI GCGC 2 cut(s) 73, 959
Kpn2I TCCGGA 1 cut(s) 1090
Ksp22I TGATCA 2 cut(s) 696, 1003
KspAI GTTAAC 1 cut(s) 691
Kzo9I GATC 7 cut(s) 121, 696, 782, 934, 1003, 1051, 1056
LguI GCTCTTC 1 cut(s) 455
LmnI GCTCC 2 cut(s) 349, 1093
Lsp1109I GCAGC 4 cut(s) 782, 785, 932, 985
LweI GCATC 2 cut(s) 901, 1096
MaeI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
MaeII ACGT 2 cut(s) 59, 657
MaeIII GTNAC 1 cut(s) 1077
MalI GATC 7 cut(s) 123, 698, 784, 936, 1005, 1053, 1058
MboI GATC 7 cut(s) 121, 696, 782, 934, 1003, 1051, 1056
MhlI GDGCHC 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 790
MluCI AATT 9 cut(s) 489, 551, 574, 595, 633, 649, 721, 1015, 1024
MluNI TGGCCA 1 cut(s) 790
MlyI GAGTC 1 cut(s) 1106
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 9 cut(s) 27, 158, 427, 433, 511, 635, 733, 955, 1045
Mox20I TGGCCA 1 cut(s) 790
MroI TCCGGA 1 cut(s) 1090
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 790
MseI TTAA 4 cut(s) 197, 690, 710, 983
Msp20I TGGCCA 1 cut(s) 790
MspA1I CMGCKG 1 cut(s) 923
MspCI CTTAAG 1 cut(s) 196
MspI CCGG 1 cut(s) 1091
MspR9I CCNGG 4 cut(s) 21, 153, 639, 978
MvaI CCWGG 4 cut(s) 21, 153, 639, 978
MwoI GCNNNNNNNGC 6 cut(s) 245, 740, 755, 920, 973, 1093
NdeI CATATG 1 cut(s) 1118
NdeII GATC 7 cut(s) 121, 696, 782, 934, 1003, 1051, 1056
NlaIII CATG 8 cut(s) 376, 631, 697, 718, 789, 955, 1015, 1063
NlaIV GGNNCC 2 cut(s) 146, 757
NmuCI GTSAC 1 cut(s) 1077
NspI RCATGY 1 cut(s) 631
PciI ACATGT 1 cut(s) 627
PciSI GCTCTTC 1 cut(s) 455
PcsI WCGNNNNNNNCGW 2 cut(s) 232, 818
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 6 cut(s) 10, 30, 518, 675, 814, 1064
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 8 cut(s) 745, 748, 772, 775, 922, 958, 975, 1074
PleI GAGTC 1 cut(s) 1106
PpsI GAGTC 1 cut(s) 1106
Ppu21I YACGTR 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 145
PscI ACATGT 1 cut(s) 627
PshBI ATTAAT 1 cut(s) 983
Psp124BI GAGCTC 1 cut(s) 346
Psp1406I AACGTT 1 cut(s) 657
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 4 cut(s) 19, 151, 637, 976
PspGI CCWGG 4 cut(s) 19, 151, 637, 976
PspN4I GGNNCC 2 cut(s) 146, 757
PspPI GGNCC 2 cut(s) 145, 228
PspPPI RGGWCCY 1 cut(s) 145
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 923
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 5 cut(s) 62, 300, 607, 877, 886
RsaNI GTAC 5 cut(s) 61, 299, 606, 876, 885
SacI GAGCTC 1 cut(s) 346
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 4 cut(s) 197, 690, 710, 983
SatI GCNGC 8 cut(s) 744, 747, 771, 774, 921, 957, 974, 1073
Sau3AI GATC 7 cut(s) 121, 696, 782, 934, 1003, 1051, 1056
Sau96I GGNCC 2 cut(s) 145, 228
ScaI AGTACT 2 cut(s) 607, 877
SchI GAGTC 1 cut(s) 1106
ScrFI CCNGG 4 cut(s) 21, 153, 639, 978
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 2 cut(s) 901, 1096
SfcI CTRYAG 4 cut(s) 39, 331, 768, 915
SinI GGWCC 2 cut(s) 145, 228
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SnaBI TACGTA 1 cut(s) 60
Sse9I AATT 9 cut(s) 489, 551, 574, 595, 633, 649, 721, 1015, 1024
SsiI CCGC 5 cut(s) 506, 743, 746, 956, 1073
SspMI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
SstI GAGCTC 1 cut(s) 346
StyD4I CCNGG 4 cut(s) 19, 151, 637, 976
StyI CCWWGG 2 cut(s) 140, 347
TaiI ACGT 2 cut(s) 62, 660
TaqI TCGA 4 cut(s) 120, 164, 516, 812
TaqII GACCGA 1 cut(s) 219
TasI AATT 9 cut(s) 489, 551, 574, 595, 633, 649, 721, 1015, 1024
TatI WGTACW 2 cut(s) 605, 875
TauI GCSGC 4 cut(s) 746, 749, 959, 1075
TfiI GAWTC 6 cut(s) 10, 30, 518, 675, 814, 1064
Tru1I TTAA 4 cut(s) 197, 690, 710, 983
Tru9I TTAA 4 cut(s) 197, 690, 710, 983
TscAI CASTG 3 cut(s) 831, 874, 1006
TseFI GTSAC 1 cut(s) 1077
TseI GCWGC 4 cut(s) 770, 773, 920, 973
Tsp45I GTSAC 1 cut(s) 1077
TspGWI ACGGA 1 cut(s) 1057
TspRI CASTG 3 cut(s) 831, 874, 1006
Vha464I CTTAAG 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 145, 228
VspI ATTAAT 1 cut(s) 983
XapI RAATTY 5 cut(s) 551, 574, 595, 1015, 1024
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 7 cut(s) 323, 389, 603, 750, 795, 873, 929
ZrmI AGTACT 2 cut(s) 607, 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.