Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015159

Physical Location & Seq

Genomic Coordinates Forward (+)

20396527 .. 20397640

Gene Structure 1114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAGAAAACCCTAGTTTTCTACAAGGGCAGAGCTCCAAGGGGTGAGAAAAGCAACTGGGTCATGCATGAATACAGACTAGAAAACAAGCATCCTTTCAAATCCTCAAAGGAAGAATGGGTGGTTTGTAGGGTTTTCCAAAAAAACATTAGTGCATTGAAAAAGCCACAACAAGCAACAACATCCTCACAGAAGCAGCCAACCAACGAGTCTCCCTGCGACGATACGAACTCAATTGTTAACGAATTCGGAGACATCGAGCTGCCAAACCTAAACAGCAATATTAACGCAAATTCATCCAGCGGGTTCAGCAACAACATTTCTTCACCCCAAAGCTATTACAGCAATATTCTTGATCATAGCAAGAACAACATAAACGACGTTACCAACATGAGTTTGAAAATGACTTGGGCAGCAACAGCGGCAAGAGAGGCAGCCGCCAACGCTCTTTCATTGCCGTCAAGCTTGCTAAGTCCCTCAAATCTTTCGGTGAATTCGTTGCTTCTTAGGGCATTACAACTTAGGAGTAGTACTAATAATAATGGTAGTAATTATCAACCAAGAGCTACTAATCATGTTCAAGCTACAGCAGGCACTAGTACTCTAGATTACTCATCATATGATCATATCCAGCAAGGAATGATGCCGTCAATGTCTCATCACTTTGGATCCAGTACTACTATGGATCATATAAATTCAAATTTCCAAGCTTCTTCGTCGAGTACTAATGATCAGATGATGGAATCGATGCCACTGCAGCATTCGGAGCAACCATTCAATTTGGACTCCATCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090691 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

266

Amino Acids

29.46

Weight (kDa)

7.13

Isoelectric Point (pI)

62.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	1 - 27	1.6e-06	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18400
fragaria_vesca	FvH4_5g12090
malus_domestica	MD06G1216500.v1.1 MD14G1226900.v1.1
prunus_persica	Prupe.5G221600_v2.0.a1
pyrus_communis	pycom06g19290 pycom14g18830
rosa_chinensis	RchiOBHm_Chr7g0185481
rosa_laevigata	RLG00000004909
rosa_multiflora	Rmu_sc0010190.1_g000022
rosa_roxburghii	Rroxscaffold_3G00268900
rosa_rugosa	Rorug06G0469800
rosa_samantha	Rh7AG073100 Rh7BG074500 Rh7CG074600
rosa_wichuraiana	Rw7G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	303, 422, 438
AclWI	GGATC	3 cut(s)	663, 676, 693
AcsI	RAATTY	5 cut(s)	245, 292, 493, 694, 700
AfaI	GTAC	4 cut(s)	532, 601, 676, 724
AgsI	TTSAA	6 cut(s)	100, 160, 400, 581, 699, 778
AhlI	ACTAGT	1 cut(s)	596
AluBI	AGCT	7 cut(s)	35, 262, 336, 465, 566, 584, 710
AluI	AGCT	7 cut(s)	35, 262, 336, 465, 566, 584, 710
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	3 cut(s)	216, 246, 660
AlwI	GGATC	3 cut(s)	663, 676, 693
ApeKI	GCWGC	5 cut(s)	196, 262, 413, 434, 757
ApoI	RAATTY	5 cut(s)	245, 292, 493, 694, 700
AsuHPI	GGTGA	3 cut(s)	56, 318, 502
BamHI	GGATCC	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	5 cut(s)	208, 249, 425, 446, 769
BccI	CCATC	2 cut(s)	733, 797
BceAI	ACGGC	2 cut(s)	442, 631
BcgI	CGANNNNNNTGC	2 cut(s)	736, 770
BclI	TGATCA	3 cut(s)	355, 622, 730
BcoDI	GTCTC	3 cut(s)	216, 246, 660
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	4 cut(s)	14, 80, 597, 605
BfmI	CTRYAG	2 cut(s)	585, 755
BisI	GCNGC	7 cut(s)	197, 263, 414, 423, 435, 438, 758
BlsI	GCNGC	7 cut(s)	198, 264, 415, 424, 436, 439, 759
BmcAI	AGTACT	4 cut(s)	532, 601, 676, 724
BmiI	GGNNCC	1 cut(s)	670
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	3 cut(s)	100, 633, 738
BmuI	ACTGGG	1 cut(s)	67
Bsa29I	ATCGAT	1 cut(s)	746
BsaJI	CCNNGG	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	62, 672
Bse3DI	GCAATG	1 cut(s)	452
BseCI	ATCGAT	1 cut(s)	746
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	3 cut(s)	91, 182, 296
BseMI	GCAATG	1 cut(s)	452
BseNI	ACTGG	2 cut(s)	62, 672
BseXI	GCAGC	5 cut(s)	208, 249, 425, 446, 769
BshVI	ATCGAT	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	459
BsmAI	GTCTC	3 cut(s)	216, 246, 660
BsmFI	GGGAC	1 cut(s)	459
BsmI	GAATGC	1 cut(s)	760
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	5 cut(s)	355, 622, 668, 685, 730
BspACI	CCGC	3 cut(s)	303, 422, 438
BspDI	ATCGAT	1 cut(s)	746
BspLI	GGNNCC	1 cut(s)	670
BspMAI	CTGCAG	1 cut(s)	759
BspPI	GGATC	3 cut(s)	663, 676, 693
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	62, 672
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	5 cut(s)	355, 622, 668, 685, 730
BssT1I	CCWWGG	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	467, 592
BstDEI	CTNAG	3 cut(s)	470, 506, 521
BstF5I	GGATG	3 cut(s)	91, 182, 296
BstKTI	GATC	5 cut(s)	358, 625, 671, 688, 733
BstMAI	GTCTC	3 cut(s)	216, 246, 660
BstMBI	GATC	5 cut(s)	355, 622, 668, 685, 730
BstMWI	GCNNNNNNNGC	8 cut(s)	309, 342, 419, 422, 431, 443, 757, 766
BstSFI	CTRYAG	2 cut(s)	585, 755
BstV1I	GCAGC	5 cut(s)	208, 249, 425, 446, 769
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
Bsu15I	ATCGAT	1 cut(s)	746
BsuTUI	ATCGAT	1 cut(s)	746
BtsCI	GGATG	3 cut(s)	91, 182, 296
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	1 cut(s)	752
Cac8I	GCNNGC	2 cut(s)	467, 592
ClaI	ATCGAT	1 cut(s)	746
Csp6I	GTAC	4 cut(s)	531, 600, 675, 723
CviAII	CATG	4 cut(s)	64, 68, 391, 575
CviQI	GTAC	4 cut(s)	531, 600, 675, 723
DdeI	CTNAG	3 cut(s)	470, 506, 521
DpnI	GATC	5 cut(s)	357, 624, 670, 687, 732
DpnII	GATC	5 cut(s)	355, 622, 668, 685, 730
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	35
EcoRI	GAATTC	2 cut(s)	245, 493
EcoT14I	CCWWGG	1 cut(s)	38
EcoT22I	ATGCAT	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	4 cut(s)	67, 71, 394, 578
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	4 cut(s)	63, 67, 390, 574
FauI	CCCGC	1 cut(s)	296
FauNDI	CATATG	1 cut(s)	619
FbaI	TGATCA	3 cut(s)	355, 622, 730
Fnu4HI	GCNGC	7 cut(s)	197, 263, 414, 423, 435, 438, 758
FokI	GGATG	3 cut(s)	78, 169, 283
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	7 cut(s)	197, 263, 414, 423, 435, 438, 758
FspBI	CTAG	4 cut(s)	14, 80, 597, 605
GluI	GCNGC	7 cut(s)	197, 263, 414, 423, 435, 438, 758
Hin1II	CATG	4 cut(s)	67, 71, 394, 578
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	2 cut(s)	463, 708
HinfI	GANTC	3 cut(s)	209, 743, 785
HpaI	GTTAAC	1 cut(s)	241
HphI	GGTGA	3 cut(s)	56, 318, 502
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	251, 735, 766
Hpy188III	TCNNGA	2 cut(s)	353, 605
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	3 cut(s)	224, 383, 721
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	67, 155, 757
HpyF10VI	GCNNNNNNNGC	8 cut(s)	309, 342, 419, 422, 431, 443, 757, 766
HpyF3I	CTNAG	3 cut(s)	470, 506, 521
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	4 cut(s)	67, 71, 394, 578
Ksp22I	TGATCA	3 cut(s)	355, 622, 730
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	5 cut(s)	355, 622, 668, 685, 730
LmnI	GCTCC	2 cut(s)	40, 766
LpnPI	CCDG	7 cut(s)	43, 229, 313, 576, 644, 685, 778
Lsp1109I	GCAGC	5 cut(s)	208, 249, 425, 446, 769
LweI	GCATC	3 cut(s)	100, 633, 738
MaeI	CTAG	4 cut(s)	14, 80, 597, 605
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	5 cut(s)	357, 624, 670, 687, 732
MboI	GATC	5 cut(s)	355, 622, 668, 685, 730
MboII	GAAGA	4 cut(s)	16, 125, 315, 705
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	8 cut(s)	234, 245, 292, 493, 550, 694, 700, 778
MlyI	GAGTC	2 cut(s)	218, 779
MnlI	CCTC	4 cut(s)	115, 196, 424, 487
Mph1103I	ATGCAT	1 cut(s)	69
MseI	TTAA	2 cut(s)	240, 285
MspA1I	CMGCKG	2 cut(s)	303, 422
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	760
MwoI	GCNNNNNNNGC	8 cut(s)	309, 342, 419, 422, 431, 443, 757, 766
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	5 cut(s)	355, 622, 668, 685, 730
NlaIII	CATG	4 cut(s)	67, 71, 394, 578
NlaIV	GGNNCC	1 cut(s)	670
NsiI	ATGCAT	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 494
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	1 cut(s)	743
PkrI	GCNGC	7 cut(s)	198, 264, 415, 424, 436, 439, 759
PleI	GAGTC	2 cut(s)	217, 779
PpsI	GAGTC	2 cut(s)	217, 779
Psp124BI	GAGCTC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	670
PstI	CTGCAG	1 cut(s)	759
PsuI	RGATCY	1 cut(s)	668
RsaI	GTAC	4 cut(s)	532, 601, 676, 724
RsaNI	GTAC	4 cut(s)	531, 600, 675, 723
SacI	GAGCTC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	240, 285
SatI	GCNGC	7 cut(s)	197, 263, 414, 423, 435, 438, 758
Sau3AI	GATC	5 cut(s)	355, 622, 668, 685, 730
ScaI	AGTACT	4 cut(s)	532, 601, 676, 724
SchI	GAGTC	2 cut(s)	218, 779
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	9 cut(s)	37, 264, 273, 338, 384, 467, 568, 586, 712
SfaNI	GCATC	3 cut(s)	100, 633, 738
SfcI	CTRYAG	2 cut(s)	585, 755
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	8 cut(s)	234, 245, 292, 493, 550, 694, 700, 778
SsiI	CCGC	3 cut(s)	303, 422, 438
SspI	AATATT	2 cut(s)	283, 349
SspMI	CTAG	4 cut(s)	14, 80, 597, 605
SstI	GAGCTC	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	38
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	3 cut(s)	258, 719, 746
TasI	AATT	8 cut(s)	234, 245, 292, 493, 550, 694, 700, 778
TatI	WGTACW	4 cut(s)	530, 599, 674, 722
TauI	GCSGC	2 cut(s)	425, 440
TfiI	GAWTC	1 cut(s)	743
Tru1I	TTAA	2 cut(s)	240, 285
Tru9I	TTAA	2 cut(s)	240, 285
TscAI	CASTG	1 cut(s)	759
TseI	GCWGC	5 cut(s)	196, 262, 413, 434, 757
TspDTI	ATGAA	4 cut(s)	17, 84, 285, 441
TspRI	CASTG	1 cut(s)	759
XapI	RAATTY	5 cut(s)	245, 292, 493, 694, 700
XbaI	TCTAGA	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XspI	CTAG	4 cut(s)	14, 80, 597, 605
ZrmI	AGTACT	4 cut(s)	532, 601, 676, 724
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.