Rh7AG073100

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015159
Physical Location & Seq
Reverse (-)
5209748 .. 5222123
12376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG073100.1

Sequence Viewer

Length: 1023 bp
ATGAGTTTCTATGGGGACTCCTTCACAAAGCAAAGCAAAGCAAAACAAAGCAAGGCTTCGATGGGAGAGAAAGAATGGTATTTCTTCAACTTAAGAGACCGAAAATACCCTACTGGACTTCGGACCAACCGAGCCACAGAAGCAGGGTATTGGAAGACAACTGGCAAAGACAAAGAAATACTTCGTCAAGGGGTACTCGTTGGAATGAAGAAAACCCTAGTTTTCTACAGGGGTAGAGCTCCAAGGGGTGAGAAAACCAACTGGGTCATGCACGAATACAGACTAGAAAACAAGCACCATCCCTTCAAATCCTCAACCTCAAAGGAAGAATGGGTGGTTTGTAGGGTGTTTCAGAAGAGCATAGCCTTGAAAAAACCACAGCAAATTACATCTTCCTCACCGCAATCTGTCGATTCTCTTGGGGAGACAAACTCAATGATAAATGAATTTGGAGATGTGGAGTTGCCAAATTTTATGAACAACATTGCAAATTCATCTAGTACTGGGTTCATCAGCAACAACATGTCAATTCCAGAAGGCAACAATTACAACGTTATTGATAATAAGAGAATCAATAATGATGTTAACATGATCAGCACTACTTTAAACATGAATAATTGGCTCGGGGCGAGAGAGGCGGCGGCTAGTGGTGCCATTCTTCCGGCAGCAGCACTCGGATCATGGCCATCTAGCTTGCTAAGTCCATCGAATCTTTCGTCAGTGAACTCCTTGCTACTTAGGGCATTACAACTTAGGAGCAGTGCTAGTACTAATAGTACCATCTATCAGCAACCGATTAGAGATGCTACAGCAGCTGGTCTAGAAGATCACTACTCCTCTTTCATGGCAGCTCAACAGCAACAGCAACAGCAACCTGGATTAATGTCTCACTTTGGCACTGATCATAACATGAATTCGTCAAATTTGCAAGCCTCTTCATCATCTAAGGATCAGGTCATGGATTCCGTGCCGCAGTCACAACAGCATCCGGGGCAACCATTCAACTTGGACTCCATATGGTGA

Protein Analysis

340

Amino Acids

37.93

Weight (kDa)

9.35

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 95 7.8e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18400
fragaria_vesca FvH4_5g12090
malus_domestica MD06G1216500.v1.1 MD14G1226900.v1.1
prunus_persica Prupe.5G221600_v2.0.a1
pyrus_communis pycom06g19290 pycom14g18830
rosa_chinensis RchiOBHm_Chr7g0185481
rosa_laevigata RLG00000004909
rosa_multiflora Rmu_sc0010190.1_g000022
rosa_roxburghii Rroxscaffold_3G00268900
rosa_rugosa Rorug06G0469800
rosa_samantha Rh7AG073100 Rh7BG074500 Rh7CG074600
rosa_wichuraiana Rw7G006200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 650
AciI CCGC 4 cut(s) 401, 638, 641, 971
AclI AACGTT 1 cut(s) 552
AclWI GGATC 2 cut(s) 685, 957
AcoI YGGCCR 1 cut(s) 683
AcsI RAATTY 5 cut(s) 446, 469, 490, 913, 922
AfaI GTAC 4 cut(s) 195, 502, 769, 778
AflII CTTAAG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 4 cut(s) 88, 307, 370, 1003
AjnI CCWGG 1 cut(s) 874
AluBI AGCT 4 cut(s) 239, 693, 815, 851
AluI AGCT 4 cut(s) 239, 693, 815, 851
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 3 cut(s) 90, 419, 891
AlwI GGATC 2 cut(s) 685, 957
AlwNI CAGNNNCTG 1 cut(s) 815
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 1 cut(s) 683
ApeKI GCWGC 4 cut(s) 665, 668, 812, 848
ApoI RAATTY 5 cut(s) 446, 469, 490, 913, 922
ArsI GACNNNNNNTTYG 2 cut(s) 701, 733
AseI ATTAAT 1 cut(s) 881
Asp700I GAANNNNTTC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 123
AsuC2I CCSGG 1 cut(s) 990
AsuHPI GGTGA 2 cut(s) 260, 390
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 123
BalI TGGCCA 1 cut(s) 685
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 4 cut(s) 677, 680, 824, 860
BccI CCATC 5 cut(s) 55, 306, 694, 712, 788
BciT130I CCWGG 1 cut(s) 876
BclI TGATCA 2 cut(s) 591, 901
BcnI CCSGG 1 cut(s) 990
BcoDI GTCTC 3 cut(s) 90, 419, 891
BfaI CTAG 7 cut(s) 218, 284, 498, 645, 690, 765, 821
BfmI CTRYAG 2 cut(s) 226, 807
BfrI CTTAAG 1 cut(s) 91
BisI GCNGC 7 cut(s) 639, 642, 666, 669, 813, 849, 971
BlsI GCNGC 7 cut(s) 640, 643, 667, 670, 814, 850, 972
BmcAI AGTACT 2 cut(s) 502, 769
Bme1390I CCNGG 2 cut(s) 876, 990
Bme18I GGWCC 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 652
BmrFI CCNGG 2 cut(s) 876, 990
BmrI ACTGGG 2 cut(s) 271, 513
BmsI GCATC 2 cut(s) 793, 994
BmuI ACTGGG 2 cut(s) 271, 513
BpiI GAAGAC 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BpuMI CCSGG 1 cut(s) 990
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 242, 989
BsaXI ACNNNNNCTCC 1 cut(s) 995
Bse1I ACTGG 4 cut(s) 118, 166, 266, 508
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 876
BseDI CCNNGG 2 cut(s) 242, 989
BseGI GGATG 2 cut(s) 298, 985
BseMI GCAATG 1 cut(s) 483
BseNI ACTGG 4 cut(s) 118, 166, 266, 508
BseRI GAGGAG 1 cut(s) 826
BseXI GCAGC 4 cut(s) 677, 680, 824, 860
BshFI GGCC 1 cut(s) 685
BshNI GGYRCC 1 cut(s) 650
BsiHKAI GWGCWC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 2 cut(s) 662, 989
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 3 cut(s) 90, 419, 891
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 685
Bso31I GGTCTC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 5 cut(s) 591, 677, 826, 901, 949
BspACI CCGC 4 cut(s) 401, 638, 641, 971
BspANI GGCC 1 cut(s) 685
BspLI GGNNCC 1 cut(s) 652
BspPI GGATC 2 cut(s) 685, 957
BspQI GCTCTTC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 650
BspTI CTTAAG 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 4 cut(s) 118, 166, 266, 508
BssECI CCNNGG 2 cut(s) 242, 989
BssMI GATC 5 cut(s) 591, 677, 826, 901, 949
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 876
Bst6I CTCTTC 2 cut(s) 350, 940
BstAFI CTTAAG 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 695, 930
BstDEI CTNAG 4 cut(s) 698, 737, 752, 945
BstF5I GGATG 2 cut(s) 298, 985
BstKTI GATC 5 cut(s) 594, 680, 829, 904, 952
BstMAI GTCTC 3 cut(s) 90, 419, 891
BstMBI GATC 5 cut(s) 591, 677, 826, 901, 949
BstMWI GCNNNNNNNGC 5 cut(s) 140, 635, 650, 812, 991
BstNI CCWGG 1 cut(s) 876
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 2 cut(s) 874, 988
BstSFI CTRYAG 2 cut(s) 226, 807
BstV1I GCAGC 4 cut(s) 677, 680, 824, 860
BstV2I GAAGAC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 685
BtsCI GGATG 2 cut(s) 298, 985
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 3 cut(s) 726, 766, 897
Cac8I GCNNGC 2 cut(s) 695, 930
CaiI CAGNNNCTG 1 cut(s) 815
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 4 cut(s) 194, 501, 768, 777
CviAII CATG 8 cut(s) 268, 523, 589, 610, 681, 844, 910, 958
CviQI GTAC 4 cut(s) 194, 501, 768, 777
DdeI CTNAG 4 cut(s) 698, 737, 752, 945
DpnI GATC 5 cut(s) 593, 679, 828, 903, 951
DpnII GATC 5 cut(s) 591, 677, 826, 901, 949
DraI TTTAAA 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 683
Eam1104I CTCTTC 2 cut(s) 350, 940
EarI CTCTTC 2 cut(s) 350, 940
Ecl136II GAGCTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 913
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 8 cut(s) 271, 526, 592, 613, 684, 847, 913, 961
FalI AAGNNNNNCTT 4 cut(s) 40, 72, 165, 197
FaqI GGGAC 1 cut(s) 29
FatI CATG 8 cut(s) 267, 522, 588, 609, 680, 843, 909, 957
FauNDI CATATG 1 cut(s) 1016
FbaI TGATCA 2 cut(s) 591, 901
Fnu4HI GCNGC 7 cut(s) 639, 642, 666, 669, 813, 849, 971
FokI GGATG 2 cut(s) 285, 972
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 7 cut(s) 639, 642, 666, 669, 813, 849, 971
FspBI CTAG 7 cut(s) 218, 284, 498, 645, 690, 765, 821
GluI GCNGC 7 cut(s) 639, 642, 666, 669, 813, 849, 971
HaeIII GGCC 1 cut(s) 685
HapII CCGG 2 cut(s) 662, 989
Hin1II CATG 8 cut(s) 271, 526, 592, 613, 684, 847, 913, 961
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 6 cut(s) 17, 413, 570, 709, 962, 1010
HpaI GTTAAC 1 cut(s) 586
HpaII CCGG 2 cut(s) 662, 989
HphI GGTGA 2 cut(s) 260, 390
Hpy166II GTNNAC 2 cut(s) 586, 724
Hpy188I TCNGA 3 cut(s) 123, 354, 677
Hpy188III TCNNGA 2 cut(s) 533, 821
Hpy8I GTNNAC 2 cut(s) 586, 724
HpyAV CCTTC 3 cut(s) 31, 313, 530
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 3 cut(s) 271, 488, 928
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 635, 650, 812, 991
HpyF3I CTNAG 4 cut(s) 698, 737, 752, 945
HpySE526I ACGT 1 cut(s) 552
Hsp92II CATG 8 cut(s) 271, 526, 592, 613, 684, 847, 913, 961
Ksp22I TGATCA 2 cut(s) 591, 901
KspAI GTTAAC 1 cut(s) 586
Kzo9I GATC 5 cut(s) 591, 677, 826, 901, 949
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 2 cut(s) 244, 756
Lsp1109I GCAGC 4 cut(s) 677, 680, 824, 860
LweI GCATC 2 cut(s) 793, 994
MaeI CTAG 7 cut(s) 218, 284, 498, 645, 690, 765, 821
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 975
MalI GATC 5 cut(s) 593, 679, 828, 903, 951
MboI GATC 5 cut(s) 591, 677, 826, 901, 949
MboII GAAGA 9 cut(s) 76, 166, 220, 338, 367, 384, 650, 836, 927
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 685
MluCI AATT 9 cut(s) 384, 446, 469, 490, 528, 544, 616, 913, 922
MluNI TGGCCA 1 cut(s) 685
MlyI GAGTC 2 cut(s) 11, 1004
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 6 cut(s) 322, 328, 406, 628, 847, 943
Mox20I TGGCCA 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 1 cut(s) 685
MseI TTAA 4 cut(s) 92, 585, 605, 881
Msp20I TGGCCA 1 cut(s) 685
MspA1I CMGCKG 1 cut(s) 815
MspCI CTTAAG 1 cut(s) 91
MspI CCGG 2 cut(s) 662, 989
MspR9I CCNGG 2 cut(s) 876, 990
MvaI CCWGG 1 cut(s) 876
MwoI GCNNNNNNNGC 5 cut(s) 140, 635, 650, 812, 991
NciI CCSGG 1 cut(s) 990
NdeI CATATG 1 cut(s) 1016
NdeII GATC 5 cut(s) 591, 677, 826, 901, 949
NlaIII CATG 8 cut(s) 271, 526, 592, 613, 684, 847, 913, 961
NlaIV GGNNCC 1 cut(s) 652
NmuCI GTSAC 1 cut(s) 975
NspI RCATGY 1 cut(s) 526
PciI ACATGT 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 2 cut(s) 127, 713
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 4 cut(s) 413, 570, 709, 962
PkrI GCNGC 7 cut(s) 640, 643, 667, 670, 814, 850, 972
PleI GAGTC 2 cut(s) 11, 1004
PpsI GAGTC 2 cut(s) 11, 1004
PscI ACATGT 1 cut(s) 522
PshBI ATTAAT 1 cut(s) 881
Psp124BI GAGCTC 1 cut(s) 241
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 874
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 1 cut(s) 652
PspPI GGNCC 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 815
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 4 cut(s) 195, 502, 769, 778
RsaNI GTAC 4 cut(s) 194, 501, 768, 777
SacI GAGCTC 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 4 cut(s) 92, 585, 605, 881
SatI GCNGC 7 cut(s) 639, 642, 666, 669, 813, 849, 971
Sau3AI GATC 5 cut(s) 591, 677, 826, 901, 949
Sau96I GGNCC 1 cut(s) 123
ScaI AGTACT 2 cut(s) 502, 769
SchI GAGTC 2 cut(s) 11, 1004
ScrFI CCNGG 2 cut(s) 876, 990
SduI GDGCHC 1 cut(s) 241
SetI ASST 8 cut(s) 241, 320, 555, 695, 817, 853, 877, 957
SfaNI GCATC 2 cut(s) 793, 994
SfcI CTRYAG 2 cut(s) 226, 807
SinI GGWCC 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 9 cut(s) 384, 446, 469, 490, 528, 544, 616, 913, 922
SsiI CCGC 4 cut(s) 401, 638, 641, 971
SspMI CTAG 7 cut(s) 218, 284, 498, 645, 690, 765, 821
SstI GAGCTC 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 874, 988
StyI CCWWGG 1 cut(s) 242
TaiI ACGT 1 cut(s) 555
TaqI TCGA 3 cut(s) 59, 411, 707
TaqII GACCGA 1 cut(s) 114
TasI AATT 9 cut(s) 384, 446, 469, 490, 528, 544, 616, 913, 922
TatI WGTACW 2 cut(s) 500, 767
TauI GCSGC 3 cut(s) 641, 644, 973
TfiI GAWTC 4 cut(s) 413, 570, 709, 962
Tru1I TTAA 4 cut(s) 92, 585, 605, 881
Tru9I TTAA 4 cut(s) 92, 585, 605, 881
TscAI CASTG 3 cut(s) 726, 766, 904
TseFI GTSAC 1 cut(s) 975
TseI GCWGC 4 cut(s) 665, 668, 812, 848
Tsp45I GTSAC 1 cut(s) 975
TspDTI ATGAA 9 cut(s) 221, 459, 483, 491, 499, 626, 832, 926, 927
TspGWI ACGGA 1 cut(s) 955
TspRI CASTG 3 cut(s) 726, 766, 904
Vha464I CTTAAG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 123
VspI ATTAAT 1 cut(s) 881
XapI RAATTY 5 cut(s) 446, 469, 490, 913, 922
XbaI TCTAGA 1 cut(s) 820
XceI RCATGY 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 7 cut(s) 218, 284, 498, 645, 690, 765, 821
ZrmI AGTACT 2 cut(s) 502, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.