AT3G18760

ribosomal protein S6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008708
Physical Location & Seq
Reverse (-)
6457677 .. 6459725
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18760.2

Sequence Viewer

Length: 420 bp
ATGCCGCTCTACGACTGTATGCTTCTGTTCAAGCCTATAATCAGGAAGGAGGGCCTCATCGACCTCGTTGCGCGCATTGGTAAACACGTTTACAGCAGAAATGGCGTCCTCACCGAGATCAAATCCTTTGGCAAGGTCGAATTGGGTTACGGTATTAGAAAGCTCGACGGAAGACACTATCAGGGACAATTGATGCAGATAACAATGATGACAACTCCAAACATGAACAAGGAGCTTCACTACCTGAACAAGGAAGACAAACTGCTGCGCTGGCTCTTAGTTAAACACCGTGACATCAAGATTGGACAGTCGGAAAAGGAAGATAGTCTGACTGTGCCTAACAGACTCACTAGTGGGAGCTTATATGATGGATCCTCCTCGGACGAAGATGACAACAACATTTTAGGGTTATCACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

139

Amino Acids

15.97

Weight (kDa)

8.97

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6 PF01250 4 - 90 1.4e-12 Ribosomal protein S6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 7
AccII CGCG 1 cut(s) 73
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 366, 379
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 1 cut(s) 31
AhlI ACTAGT 1 cut(s) 350
AluBI AGCT 3 cut(s) 163, 235, 360
AluI AGCT 3 cut(s) 163, 235, 360
AlwI GGATC 2 cut(s) 366, 379
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 265
AspLEI GCGC 3 cut(s) 73, 75, 270
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 103
BamHI GGATCC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 178, 261
BbvI GCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 362
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 1 cut(s) 351
BisI GCNGC 2 cut(s) 5, 266
BlsI GCNGC 2 cut(s) 6, 267
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 373
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 178, 261
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 250
BsePI GCGCGC 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 367
BseXI GCAGC 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 117, 371
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 54
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 373
BspPI GGATC 2 cut(s) 366, 379
BsrBI CCGCTC 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 378
BssHII GCGCGC 1 cut(s) 71
BssMI GATC 2 cut(s) 117, 371
BssNI GRCGYC 1 cut(s) 105
Bst4CI ACNGT 5 cut(s) 17, 152, 290, 309, 334
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 73, 272
BstDEI CTNAG 1 cut(s) 277
BstENI CCTNNNNNAGG 1 cut(s) 248
BstFNI CGCG 1 cut(s) 73
BstHHI GCGC 3 cut(s) 73, 75, 270
BstKTI GATC 2 cut(s) 120, 374
BstMBI GATC 2 cut(s) 117, 371
BstMWI GCNNNNNNNGC 2 cut(s) 102, 271
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 2 cut(s) 178, 261
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BsuRI GGCC 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 73, 272
CfoI GCGC 3 cut(s) 73, 75, 270
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 94
CviAII CATG 1 cut(s) 223
CviJI RGCY 6 cut(s) 34, 54, 163, 235, 274, 360
CviKI_1 RGCY 6 cut(s) 34, 54, 163, 235, 274, 360
DdeI CTNAG 1 cut(s) 277
DpnI GATC 2 cut(s) 119, 373
DpnII GATC 2 cut(s) 117, 371
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 52
FaeI CATG 1 cut(s) 226
FaiI YATR 5 cut(s) 20, 38, 224, 364, 366
FaqI GGGAC 1 cut(s) 198
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 5, 266
Fsp4HI GCNGC 2 cut(s) 5, 266
FspBI CTAG 1 cut(s) 351
GlaI GCGC 3 cut(s) 72, 74, 269
GluI GCNGC 2 cut(s) 5, 266
HaeIII GGCC 1 cut(s) 54
HgaI GACGC 1 cut(s) 94
HhaI GCGC 3 cut(s) 73, 75, 270
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 3 cut(s) 71, 73, 268
HinP1I GCGC 3 cut(s) 71, 73, 268
HinfI GANTC 1 cut(s) 345
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 83, 91
Hpy188I TCNGA 3 cut(s) 313, 330, 382
Hpy188III TCNNGA 3 cut(s) 43, 298, 414
Hpy8I GTNNAC 2 cut(s) 83, 91
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 5 cut(s) 17, 152, 290, 309, 334
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 271
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 3 cut(s) 71, 73, 268
Kzo9I GATC 2 cut(s) 117, 371
LmnI GCTCC 2 cut(s) 232, 357
LpnPI CCDG 4 cut(s) 28, 167, 256, 257
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 146, 290
MalI GATC 2 cut(s) 119, 373
MbiI CCGCTC 1 cut(s) 7
MboI GATC 2 cut(s) 117, 371
MboII GAAGA 4 cut(s) 183, 266, 332, 398
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 1 cut(s) 371
MluCI AATT 2 cut(s) 140, 188
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 6 cut(s) 43, 65, 74, 119, 385, 388
MseI TTAA 1 cut(s) 282
MunI CAATTG 1 cut(s) 188
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 102, 271
NdeII GATC 2 cut(s) 117, 371
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 290
PauI GCGCGC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 6, 267
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 371
PteI GCGCGC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 5, 266
Sau3AI GATC 2 cut(s) 117, 371
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 339
SetI ASST 7 cut(s) 66, 90, 138, 165, 237, 246, 362
SfaNI GCATC 1 cut(s) 183
SpeI ACTAGT 1 cut(s) 350
Sse9I AATT 2 cut(s) 140, 188
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 351
TaaI ACNGT 5 cut(s) 17, 152, 290, 309, 334
TaiI ACGT 1 cut(s) 90
TaqI TCGA 3 cut(s) 60, 138, 165
TasI AATT 2 cut(s) 140, 188
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 183
XagI CCTNNNNNAGG 1 cut(s) 248
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.