Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008708

Physical Location & Seq

Genomic Coordinates Reverse (-)

56016218 .. 56016972

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0467500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGATGTTGGTTTTGATGCTACAAATATGGAGAATCTCTTTTCTTGTCTTCCCTGGTACACCAAAAGATGAAGATGATGTTGGTTTTGATGCTACAAATATGGAGAATCTCTTTTCTTGTCTTCCCTGGTACACCAAAAGATCTCTGCAGCGTATTCTCAGCATGAGTACGATAAGAACAGTACCAATGCTAAAAAATCTGGATGAAAAAGTGTTGAAAATGATATGCGACTATTTGAAGCCTGTGAGCTACGCAGACAATACCATCGTTTTTGGAATGGGAGAACCACTTGATCGCATGGTCTTCATTGCAGAGGGCTTCATGTGGACCTATACGACTGCTGCTGGGAGTGGTGAATCCATGGACACCAACTTCCTAAAGAAAGGTGATTCTTATGGAAAAGAGCTTCTGCAGTTTGCACAAGGATCATCTTTGAACCAACTTCCTACCTCGGCTGCAAATGTCAGATGTCACTCAAATGTAGATGCCTTCGTTCTCATGGCCATGGACTTGAGAAGCATAGTAAGTATATGCGAAAAATGGTGGCCTTTCGACTACAATGCTTCTCAAGATGATGCCGCGGACCAGGTGGCGCCACTGCCACGGCCATTTCCACAACCACGGAGACGTACATCAACTTCATCGACCCCACCCGCTACAGATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

222

Amino Acids

25.09

Weight (kDa)

5.24

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18760 AT3G18760
fragaria_vesca	FvH4_1g01540 FvH4_1g01540 FvH4_1g01540 FvH4_1g01540
malus_domestica	MD02G1012200.v1.1 MD15G1158000.v1.1
prunus_persica	Prupe.3G048400_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1
pyrus_communis	pycom02g01140 pycom15g14180
rosa_chinensis	RchiOBHm_Chr2g0086501
rosa_multiflora	Rmu_sc0005127.1_g000001 Rmu_sc0012559.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154510
rosa_rugosa	Rorug01G0467500
rosa_samantha	Rh2AG018300 Rh2CG018700 Rh2DG019600
rosa_wichuraiana	Rw2G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	592
AccII	CGCG	1 cut(s)	581
AciI	CCGC	3 cut(s)	579, 581, 654
AclWI	GGATC	1 cut(s)	433
AcoI	YGGCCR	2 cut(s)	501, 605
AcyI	GRCGYC	1 cut(s)	593
AfaI	GTAC	5 cut(s)	58, 131, 169, 183, 631
AgsI	TTSAA	3 cut(s)	217, 238, 436
AjnI	CCWGG	3 cut(s)	52, 125, 585
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	2 cut(s)	249, 406
AluI	AGCT	2 cut(s)	249, 406
Alw26I	GTCTC	1 cut(s)	619
AlwI	GGATC	1 cut(s)	433
AoxI	GGCC	3 cut(s)	501, 545, 605
ApeKI	GCWGC	3 cut(s)	148, 341, 455
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	2 cut(s)	327, 583
AsuHPI	GGTGA	2 cut(s)	365, 398
AvaII	GGWCC	2 cut(s)	327, 583
BalI	TGGCCA	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	592
BarI	GAAGNNNNNNTAC	2 cut(s)	622, 654
BbsI	GAAGAC	3 cut(s)	40, 113, 295
BbvI	GCAGC	3 cut(s)	160, 328, 442
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	620
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciT130I	CCWGG	3 cut(s)	54, 127, 587
BcoDI	GTCTC	1 cut(s)	619
BfmI	CTRYAG	3 cut(s)	146, 410, 657
BfoI	RGCGCY	1 cut(s)	596
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	4 cut(s)	149, 342, 456, 579
BlsI	GCNGC	4 cut(s)	150, 343, 457, 580
Bme1390I	CCNGG	3 cut(s)	54, 127, 587
Bme18I	GGWCC	2 cut(s)	327, 583
BmgT120I	GGNCC	2 cut(s)	327, 583
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	3 cut(s)	54, 127, 587
BmsI	GCATC	4 cut(s)	6, 79, 475, 565
BpiI	GAAGAC	3 cut(s)	40, 113, 295
BpuEI	CTTGAG	2 cut(s)	532, 552
Bsa29I	ATCGAT	1 cut(s)	664
BsaHI	GRCGYC	1 cut(s)	593
BsaJI	CCNNGG	8 cut(s)	52, 125, 360, 450, 504, 579, 602, 620
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	3 cut(s)	54, 127, 587
BseCI	ATCGAT	1 cut(s)	664
BseDI	CCNNGG	8 cut(s)	52, 125, 360, 450, 504, 579, 602, 620
BseGI	GGATG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	160, 328, 442
BseYI	CCCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	581
BshFI	GGCC	3 cut(s)	503, 547, 607
BshNI	GGYRCC	1 cut(s)	592
BshVI	ATCGAT	1 cut(s)	664
BsmAI	GTCTC	1 cut(s)	619
BsmBI	CGTCTC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	503, 547, 607
Bsp143I	GATC	4 cut(s)	140, 292, 425, 661
Bsp19I	CCATGG	2 cut(s)	360, 504
BspACI	CCGC	3 cut(s)	579, 581, 654
BspANI	GGCC	3 cut(s)	503, 547, 607
BspCNI	CTCAG	1 cut(s)	171
BspDI	ATCGAT	1 cut(s)	664
BspFNI	CGCG	1 cut(s)	581
BspLI	GGNNCC	1 cut(s)	594
BspMAI	CTGCAG	2 cut(s)	150, 414
BspPI	GGATC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	306
BssECI	CCNNGG	8 cut(s)	52, 125, 360, 450, 504, 579, 602, 620
BssMI	GATC	4 cut(s)	140, 292, 425, 661
BssNI	GRCGYC	1 cut(s)	593
BssT1I	CCWWGG	2 cut(s)	360, 504
Bst2UI	CCWGG	3 cut(s)	54, 127, 587
Bst4CI	ACNGT	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	593
BstDEI	CTNAG	1 cut(s)	158
BstDSI	CCRYGG	5 cut(s)	360, 504, 579, 602, 620
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	581
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	4 cut(s)	143, 295, 428, 664
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	4 cut(s)	140, 292, 425, 661
BstNI	CCWGG	3 cut(s)	54, 127, 587
BstSCI	CCNGG	3 cut(s)	52, 125, 585
BstSFI	CTRYAG	3 cut(s)	146, 410, 657
BstUI	CGCG	1 cut(s)	581
BstV1I	GCAGC	3 cut(s)	160, 328, 442
BstV2I	GAAGAC	3 cut(s)	40, 113, 295
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	664
BsuRI	GGCC	3 cut(s)	503, 547, 607
BsuTUI	ATCGAT	1 cut(s)	664
BtgI	CCRYGG	5 cut(s)	360, 504, 579, 602, 620
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	1 cut(s)	596
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	2 cut(s)	327, 583
Cfr42I	CCGCGG	1 cut(s)	582
ClaI	ATCGAT	1 cut(s)	664
CsiI	ACCWGGT	1 cut(s)	585
Csp6I	GTAC	5 cut(s)	57, 130, 168, 182, 630
CviAII	CATG	6 cut(s)	163, 298, 322, 361, 499, 505
CviJI	RGCY	8 cut(s)	241, 249, 318, 406, 455, 503, 547, 607
CviKI_1	RGCY	8 cut(s)	241, 249, 318, 406, 455, 503, 547, 607
CviQI	GTAC	5 cut(s)	57, 130, 168, 182, 630
DdeI	CTNAG	1 cut(s)	158
DinI	GGCGCC	1 cut(s)	594
DpnI	GATC	4 cut(s)	142, 294, 427, 663
DpnII	GATC	4 cut(s)	140, 292, 425, 661
EaeI	YGGCCR	2 cut(s)	501, 605
Eco130I	CCWWGG	2 cut(s)	360, 504
Eco47I	GGWCC	2 cut(s)	327, 583
EcoRII	CCWGG	3 cut(s)	52, 125, 585
EcoT14I	CCWWGG	2 cut(s)	360, 504
EgeI	GGCGCC	1 cut(s)	594
EheI	GGCGCC	1 cut(s)	594
ErhI	CCWWGG	2 cut(s)	360, 504
Esp3I	CGTCTC	1 cut(s)	619
FaeI	CATG	6 cut(s)	166, 301, 325, 364, 502, 508
FatI	CATG	6 cut(s)	162, 297, 321, 360, 498, 504
FauI	CCCGC	1 cut(s)	661
Fnu4HI	GCNGC	4 cut(s)	149, 342, 456, 579
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	4 cut(s)	149, 342, 456, 579
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	4 cut(s)	149, 342, 456, 579
GsaI	CCCAGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	3 cut(s)	503, 547, 607
HhaI	GCGC	1 cut(s)	595
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	6 cut(s)	166, 301, 325, 364, 502, 508
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	4 cut(s)	33, 106, 356, 389
HphI	GGTGA	2 cut(s)	365, 398
Hpy166II	GTNNAC	3 cut(s)	59, 132, 327
Hpy188I	TCNGA	1 cut(s)	467
Hpy188III	TCNNGA	2 cut(s)	200, 569
Hpy8I	GTNNAC	3 cut(s)	59, 132, 327
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	5 cut(s)	148, 311, 412, 419, 458
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	628
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	6 cut(s)	166, 301, 325, 364, 502, 508
HspAI	GCGC	1 cut(s)	593
KasI	GGCGCC	1 cut(s)	592
KspI	CCGCGG	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	140, 292, 425, 661
LpnPI	CCDG	9 cut(s)	39, 66, 112, 139, 185, 255, 330, 572, 599
Lsp1109I	GCAGC	3 cut(s)	160, 328, 442
LweI	GCATC	4 cut(s)	6, 79, 475, 565
MabI	ACCWGGT	1 cut(s)	585
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	4 cut(s)	142, 294, 427, 663
MboI	GATC	4 cut(s)	140, 292, 425, 661
MboII	GAAGA	4 cut(s)	40, 83, 113, 295
MflI	RGATCY	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	503
MluNI	TGGCCA	1 cut(s)	503
Mly113I	GGCGCC	1 cut(s)	593
MnlI	CCTC	2 cut(s)	307, 460
Mox20I	TGGCCA	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	503
MslI	CAYNNNNRTG	2 cut(s)	477, 503
Msp20I	TGGCCA	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	581
MspR9I	CCNGG	3 cut(s)	54, 127, 587
MvaI	CCWGG	3 cut(s)	54, 127, 587
MvnI	CGCG	1 cut(s)	581
NarI	GGCGCC	1 cut(s)	593
NcoI	CCATGG	2 cut(s)	360, 504
NdeII	GATC	4 cut(s)	140, 292, 425, 661
NlaIII	CATG	6 cut(s)	166, 301, 325, 364, 502, 508
NlaIV	GGNNCC	1 cut(s)	594
NmeAIII	GCCGAG	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	470
PfeI	GAWTC	4 cut(s)	33, 106, 356, 389
PkrI	GCNGC	4 cut(s)	150, 343, 457, 580
PluTI	GGCGCC	1 cut(s)	596
Psp6I	CCWGG	3 cut(s)	52, 125, 585
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	3 cut(s)	52, 125, 585
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	2 cut(s)	327, 583
PstI	CTGCAG	2 cut(s)	150, 414
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	5 cut(s)	58, 131, 169, 183, 631
RsaNI	GTAC	5 cut(s)	57, 130, 168, 182, 630
RseI	CAYNNNNRTG	2 cut(s)	477, 503
SacII	CCGCGG	1 cut(s)	582
SatI	GCNGC	4 cut(s)	149, 342, 456, 579
Sau3AI	GATC	4 cut(s)	140, 292, 425, 661
Sau96I	GGNCC	2 cut(s)	327, 583
ScrFI	CCNGG	3 cut(s)	54, 127, 587
SetI	ASST	7 cut(s)	251, 332, 388, 408, 452, 591, 631
SexAI	ACCWGGT	1 cut(s)	585
SfaNI	GCATC	4 cut(s)	6, 79, 475, 565
SfcI	CTRYAG	3 cut(s)	146, 410, 657
SfoI	GGCGCC	1 cut(s)	594
Sfr303I	CCGCGG	1 cut(s)	582
SgrBI	CCGCGG	1 cut(s)	582
SinI	GGWCC	2 cut(s)	327, 583
SmiMI	CAYNNNNRTG	2 cut(s)	477, 503
SmlI	CTYRAG	2 cut(s)	511, 567
SmoI	CTYRAG	2 cut(s)	511, 567
SsiI	CCGC	3 cut(s)	579, 581, 654
SspDI	GGCGCC	1 cut(s)	592
StyD4I	CCNGG	3 cut(s)	52, 125, 585
StyI	CCWWGG	2 cut(s)	360, 504
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	3 cut(s)	552, 644, 664
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	4 cut(s)	33, 106, 356, 389
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	3 cut(s)	148, 341, 455
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	5 cut(s)	84, 219, 295, 310, 630
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	1 cut(s)	603
VpaK11BI	GGWCC	2 cut(s)	327, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.