Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008708

Physical Location & Seq

Genomic Coordinates Reverse (-)

635115 .. 636681

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAATTTCATTGCTTTTGGTGTTTACAGGTGAAAGAAAAACCGGAAGAAATGCCGCTGTACGATTGTATGCTGCTGCTGAAGCCCCATGTGAGGAAGGAGTCTCTGATGGACTTGGTTGCTCGAGTAAGCAAACACGTTTGCAGAAGAAATGGAGTTATTACTGACATGAAGTCGTTCGGCACTGTTCAGCTAGGTTATGGTATTAAGAAGCTTGATGGAAGGTACTATCAGGGCCAACTAATGCAAATGACAATGATGACTACACCCAACATCAACAAGGAGCTGCACTACTTGAACAAGGAAGATCGATTGCTGCGCTGGCTGTTGGTTAAACACCGAGAAACAAAGTATGGACAGGAATTTCTAAGTGAAGAGGATTCGAAAAGTGAATTCAGTAAGCTTCAGCGGAGCAGCATATATAATATGGAGGAGTCTGAGACTGAGGATGATGACGACGATGACGAGGAATATGATGTGGAACAAGAAGGAAAACGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

168

Amino Acids

19.98

Weight (kDa)

5.46

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18760 AT3G18760
fragaria_vesca	FvH4_1g01540 FvH4_1g01540 FvH4_1g01540 FvH4_1g01540
malus_domestica	MD02G1012200.v1.1 MD15G1158000.v1.1
prunus_persica	Prupe.3G048400_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1
pyrus_communis	pycom02g01140 pycom15g14180
rosa_chinensis	RchiOBHm_Chr2g0086501
rosa_multiflora	Rmu_sc0005127.1_g000001 Rmu_sc0012559.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154510
rosa_rugosa	Rorug01G0467500
rosa_samantha	Rh2AG018300 Rh2CG018700 Rh2DG019600
rosa_wichuraiana	Rw2G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	56, 409
AcsI	RAATTY	3 cut(s)	5, 362, 392
AcuI	CTGAAG	2 cut(s)	101, 389
AfaI	GTAC	3 cut(s)	62, 227, 499
AfiI	CCNNNNNNNGG	1 cut(s)	93
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	298
AhdI	GACNNNNNGTC	1 cut(s)	172
AluBI	AGCT	4 cut(s)	193, 214, 286, 403
AluI	AGCT	4 cut(s)	193, 214, 286, 403
Alw26I	GTCTC	2 cut(s)	108, 434
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	5 cut(s)	73, 76, 286, 316, 414
ApoI	RAATTY	3 cut(s)	5, 362, 392
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	60, 63, 273, 303, 426
BccI	CCATC	2 cut(s)	103, 212
BcoDI	GTCTC	2 cut(s)	108, 434
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	6 cut(s)	56, 74, 77, 287, 317, 415
BlsI	GCNGC	6 cut(s)	57, 75, 78, 288, 318, 416
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	10
BseCI	ATCGAT	1 cut(s)	310
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	10
BseMII	CTCAG	2 cut(s)	429, 435
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	5 cut(s)	60, 63, 273, 303, 426
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	237
BshVI	ATCGAT	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	108, 434
BsnI	GGCC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	123
Bsp119I	TTCGAA	1 cut(s)	383
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	2 cut(s)	56, 409
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	430, 436
BspDI	ATCGAT	1 cut(s)	310
BspT104I	TTCGAA	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	10
BssMI	GATC	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	369
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	3 cut(s)	368, 438, 444
BstF5I	GGATG	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	2 cut(s)	108, 434
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 322
BstV1I	GCAGC	5 cut(s)	60, 63, 273, 303, 426
Bsu15I	ATCGAT	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	61, 226, 498
CviAII	CATG	2 cut(s)	89, 169
CviJI	RGCY	7 cut(s)	85, 193, 214, 237, 286, 325, 403
CviKI_1	RGCY	7 cut(s)	85, 193, 214, 237, 286, 325, 403
CviQI	GTAC	3 cut(s)	61, 226, 498
DdeI	CTNAG	3 cut(s)	368, 438, 444
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DriI	GACNNNNNGTC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	369
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	101, 389
Eco88I	CYCGRG	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	392
FaeI	CATG	2 cut(s)	92, 172
FatI	CATG	2 cut(s)	88, 168
Fnu4HI	GCNGC	6 cut(s)	56, 74, 77, 287, 317, 415
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	6 cut(s)	56, 74, 77, 287, 317, 415
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	6 cut(s)	56, 74, 77, 287, 317, 415
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	92, 172
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HindIII	AAGCTT	2 cut(s)	212, 401
HinfI	GANTC	3 cut(s)	101, 380, 434
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	108, 439
Hpy8I	GTNNAC	1 cut(s)	26
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	3 cut(s)	91, 216, 482
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	138, 496
HpyCH4V	TGCA	3 cut(s)	144, 247, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 322
HpyF3I	CTNAG	3 cut(s)	368, 438, 444
HpySE526I	ACGT	2 cut(s)	138, 496
Hsp92II	CATG	2 cut(s)	92, 172
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	283, 411
LpnPI	CCDG	5 cut(s)	14, 57, 218, 307, 344
Lsp1109I	GCAGC	5 cut(s)	60, 63, 273, 303, 426
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	2 cut(s)	138, 496
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	4 cut(s)	59, 159, 317, 386
MluCI	AATT	3 cut(s)	5, 362, 392
MlyI	GAGTC	2 cut(s)	110, 443
MnlI	CCTC	5 cut(s)	87, 370, 424, 439, 460
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	2 cut(s)	207, 333
MspA1I	CMGCKG	2 cut(s)	58, 409
MspI	CCGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	82, 322
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	92, 172
NspV	TTCGAA	1 cut(s)	383
PaeR7I	CTCGAG	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	6 cut(s)	57, 75, 78, 288, 318, 416
PleI	GAGTC	2 cut(s)	109, 442
PpsI	GAGTC	2 cut(s)	109, 442
PspPI	GGNCC	1 cut(s)	235
PspXI	VCTCGAGB	1 cut(s)	123
RsaI	GTAC	3 cut(s)	62, 227, 499
RsaNI	GTAC	3 cut(s)	61, 226, 498
SaqAI	TTAA	2 cut(s)	207, 333
SatI	GCNGC	6 cut(s)	56, 74, 77, 287, 317, 415
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	2 cut(s)	110, 443
Sfr274I	CTCGAG	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	5, 362, 392
SsiI	CCGC	2 cut(s)	56, 409
SspMI	CTAG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	141, 499
TaqI	TCGA	3 cut(s)	124, 310, 383
TasI	AATT	3 cut(s)	5, 362, 392
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	207, 333
Tru9I	TTAA	2 cut(s)	207, 333
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	5 cut(s)	73, 76, 286, 316, 414
TspDTI	ATGAA	2 cut(s)	17, 185
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	3 cut(s)	5, 362, 392
XhoI	CTCGAG	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.