FvH4_1g01540

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008708
Physical Location & Seq
Reverse (-)
825782 .. 828760
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01540.t4

Sequence Viewer

Length: 495 bp
ATGCCTTTGTATGATTGTATGCTTCTGGCGAAGCCCCATGTAAAGAAGGAGGCTCTGATGGACCTAGTTGCTAGAGTAAGCAAGCATGTTTTCCGAAGAAATGGGGTTATTAGAGAGATCAAGTCCTTCGGCAATGTGCATTTGGGATATGGTATTAAGAAGCTTGATGGGAGATTTTATAAGGGTCAACTGATGCAGATGACAATGATGGCTACACCTAACATGAACAAGGAGCTGCATTACCTGAACAAGGAAGATCGGTTGCTACGCTGGCTCTTGGTTAAACACCGAGACACACAGTATGGCATGGAATTTATTAGTGAAGTGGATAGCAGAAATGAACTTAACCAATATCGTTGGGAAAGCATACTTGATGTCACCGGAAGAAATGATGACGATGATGATGATGATGATACTGACGACGAGGACGAGGAGTCTGACGACGACATTGATGAAAATGAGTCTGACCAGGAAGGAAGGCTGATTGATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

165

Amino Acids

19.32

Weight (kDa)

4.65

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AcsI RAATTY 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 250
AhdI GACNNNNNGTC 1 cut(s) 433
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 2 cut(s) 163, 235
AluI AGCT 2 cut(s) 163, 235
Alw26I GTCTC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 222
BccI CCATC 4 cut(s) 52, 161, 202, 482
BciT130I CCWGG 1 cut(s) 470
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 2 cut(s) 65, 72
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 1 cut(s) 61
BmeRI GACNNNNNGTC 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 117, 256
BsrDI GCAATG 1 cut(s) 139
BssMI GATC 2 cut(s) 117, 256
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 83, 272
BstENI CCTNNNNNAGG 1 cut(s) 248
BstKTI GATC 2 cut(s) 120, 259
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 117, 256
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 83, 272
Cfr13I GGNCC 1 cut(s) 61
CviAII CATG 4 cut(s) 38, 86, 223, 307
CviJI RGCY 7 cut(s) 34, 53, 163, 212, 235, 274, 481
CviKI_1 RGCY 7 cut(s) 34, 53, 163, 212, 235, 274, 481
DpnI GATC 2 cut(s) 119, 258
DpnII GATC 2 cut(s) 117, 256
DriI GACNNNNNGTC 1 cut(s) 433
Eam1105I GACNNNNNGTC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 61
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 468
FaeI CATG 4 cut(s) 41, 89, 226, 310
FatI CATG 4 cut(s) 37, 85, 222, 306
Fnu4HI GCNGC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 2 cut(s) 65, 72
GluI GCNGC 1 cut(s) 236
HapII CCGG 1 cut(s) 381
Hin1II CATG 4 cut(s) 41, 89, 226, 310
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 2 cut(s) 434, 461
HpaII CCGG 1 cut(s) 381
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 4 cut(s) 57, 95, 439, 466
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 2 cut(s) 425, 446
HpyAV CCTTC 4 cut(s) 40, 136, 467, 471
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 139, 196, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
Hsp92II CATG 4 cut(s) 41, 89, 226, 310
Kzo9I GATC 2 cut(s) 117, 256
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 6 cut(s) 11, 256, 257, 394, 455, 482
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 1 cut(s) 183
MaeI CTAG 2 cut(s) 65, 72
MaeIII GTNAC 1 cut(s) 376
MalI GATC 2 cut(s) 119, 258
MboI GATC 2 cut(s) 117, 256
MboII GAAGA 3 cut(s) 108, 266, 396
MluCI AATT 1 cut(s) 311
MlyI GAGTC 2 cut(s) 443, 470
MnlI CCTC 3 cut(s) 43, 418, 424
MseI TTAA 3 cut(s) 156, 282, 345
MspI CCGG 1 cut(s) 381
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 2 cut(s) 117, 256
NlaIII CATG 4 cut(s) 41, 89, 226, 310
NmuCI GTSAC 1 cut(s) 376
NspI RCATGY 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 2 cut(s) 442, 469
PpsI GAGTC 2 cut(s) 442, 469
PsiI TTATAA 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspPI GGNCC 1 cut(s) 61
SaqAI TTAA 3 cut(s) 156, 282, 345
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 2 cut(s) 117, 256
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 2 cut(s) 443, 470
ScrFI CCNGG 1 cut(s) 470
SetI ASST 5 cut(s) 66, 165, 220, 237, 246
SfaNI GCATC 1 cut(s) 183
SinI GGWCC 1 cut(s) 61
Sse9I AATT 1 cut(s) 311
SspMI CTAG 2 cut(s) 65, 72
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 300
TasI AATT 1 cut(s) 311
Tru1I TTAA 3 cut(s) 156, 282, 345
Tru9I TTAA 3 cut(s) 156, 282, 345
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 3 cut(s) 239, 354, 468
VpaK11BI GGWCC 1 cut(s) 61
XagI CCTNNNNNAGG 1 cut(s) 248
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 89
XspI CTAG 2 cut(s) 65, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.