Prupe.3G048400_v2.0.a1

Ribosomal protein S6

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
3417144 .. 3419614
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G048400.1

Sequence Viewer

Length: 468 bp
ATGCCTCTGTATGATTGTATGCTGCTGGTGAAACCCCATGTAAGGAAGGAGGCTCTGATGGACTTGGTTGCTAGAGTAAGCAAACATGTTTACAGAAGAAATGGAGTTCTTACTAACATGAAGTCATTTGGCACTGTTCAGTTGGGCTATGGTATTAAGAAGCTTGATGGCAGATATTATCAGGGTCAACTAATGCAAATGACGATGATGGCTACACCTAACATCAACAAGGAGCTGCATTACTTGAACAAGGAAGATAGATTGCTGCGCTGGCTTTTGGTTAAACACCGAGACACGAAGTACGGACTGGAATTTCTTAGTGAAGATGATGCAAAAAGTGAAGTCAGTAGGTTTCATCCGAGCAGCATATATGATGATGATGAGGAGGAGGAGGATGAGGATGAGGACGAGGATTCTGACGATAATGAATATGATGTGGACCAAGGAGGAAATCCGACTGAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

18.11

Weight (kDa)

4.73

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 42, 461
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 2 cut(s) 163, 235
AluI AGCT 2 cut(s) 163, 235
Alw26I GTCTC 1 cut(s) 285
ApeKI GCWGC 4 cut(s) 22, 235, 265, 363
ApoI RAATTY 1 cut(s) 311
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 439
BbvI GCAGC 4 cut(s) 9, 222, 252, 375
BccI CCATC 3 cut(s) 52, 161, 202
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 72
BisI GCNGC 4 cut(s) 23, 236, 266, 364
BlsI GCNGC 4 cut(s) 24, 237, 267, 365
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 439
BmsI GCATC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 442
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 461
Bse1I ACTGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 3 cut(s) 355, 400, 406
BseLI CCNNNNNNNGG 2 cut(s) 42, 461
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 3 cut(s) 398, 401, 404
BseXI GCAGC 4 cut(s) 9, 222, 252, 375
BslI CCNNNNNNNGG 2 cut(s) 42, 461
BsmAI GTCTC 1 cut(s) 285
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 442
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 3 cut(s) 355, 400, 406
BstHHI GCGC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 89
BstV1I GCAGC 4 cut(s) 9, 222, 252, 375
BtsCI GGATG 3 cut(s) 355, 400, 406
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 439
Csp6I GTAC 1 cut(s) 301
CviAII CATG 3 cut(s) 38, 86, 118
CviJI RGCY 6 cut(s) 53, 147, 163, 212, 235, 274
CviKI_1 RGCY 6 cut(s) 53, 147, 163, 212, 235, 274
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 3 cut(s) 41, 89, 121
FatI CATG 3 cut(s) 37, 85, 117
Fnu4HI GCNGC 4 cut(s) 23, 236, 266, 364
FokI GGATG 3 cut(s) 342, 407, 413
Fsp4HI GCNGC 4 cut(s) 23, 236, 266, 364
FspBI CTAG 1 cut(s) 72
GlaI GCGC 1 cut(s) 269
GluI GCNGC 4 cut(s) 23, 236, 266, 364
HhaI GCGC 1 cut(s) 270
Hin1II CATG 3 cut(s) 41, 89, 121
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 413
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 91, 188, 439
Hpy188I TCNGA 4 cut(s) 57, 360, 418, 456
Hpy8I GTNNAC 3 cut(s) 91, 188, 439
HpyAV CCTTC 2 cut(s) 40, 455
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 196, 238, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 3 cut(s) 41, 89, 121
HspAI GCGC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 4 cut(s) 11, 167, 256, 293
Lsp1109I GCAGC 4 cut(s) 9, 222, 252, 375
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 72
MboII GAAGA 3 cut(s) 108, 266, 335
MluCI AATT 1 cut(s) 311
MseI TTAA 2 cut(s) 156, 282
MwoI GCNNNNNNNGC 1 cut(s) 271
NlaIII CATG 3 cut(s) 41, 89, 121
NspI RCATGY 1 cut(s) 89
PciI ACATGT 1 cut(s) 85
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 4 cut(s) 24, 237, 267, 365
PscI ACATGT 1 cut(s) 85
PspPI GGNCC 1 cut(s) 439
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SaqAI TTAA 2 cut(s) 156, 282
SatI GCNGC 4 cut(s) 23, 236, 266, 364
Sau96I GGNCC 1 cut(s) 439
SetI ASST 4 cut(s) 165, 220, 237, 353
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 1 cut(s) 439
Sse9I AATT 1 cut(s) 311
SspMI CTAG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 136
TasI AATT 1 cut(s) 311
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 2 cut(s) 156, 282
Tru9I TTAA 2 cut(s) 156, 282
TscAI CASTG 1 cut(s) 139
TseI GCWGC 4 cut(s) 22, 235, 265, 363
TspDTI ATGAA 3 cut(s) 134, 344, 441
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.