Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008708

Physical Location & Seq

Genomic Coordinates Reverse (-)

9660002 .. 9661774

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCCGCTGTACGATTGTATGCTGCTGCTGAAACCGCATGTGAGGAAGGAGTCTCTGATGGACTTGGTCGCTCGAGTGAGCAAACACGTTTACAGAAGAAATGGAGTTATTACTGACATGAAGTCATTCGGCACTGTTCAGCTGGGTTATGGTATTAAAAAGCTTGATGGAAGGTATTATCAGGGTCAACTAATGCAAATGACAATGATGTCTACACCCAACATCAACAAGGAGCTGCACTACTTGAACAAGGATGATCGGTTGCTGCGCTGGCTGTTGGTTAAACACCGAGAAACAAAGTATGGACAGGAATTTCTTAGTGAAGAGGATTCGAAAACTGAATTTAATAAGCTTCAGCGGAGCAGCATATATGGTATGGATGAAGATGAGGATGAGGACGAGGATGATGATGACGATGACGAGGAATACGATGCGGAACAAGAAGGAAAACGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

153

Amino Acids

18.07

Weight (kDa)

4.89

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18760 AT3G18760
fragaria_vesca	FvH4_1g01540 FvH4_1g01540 FvH4_1g01540 FvH4_1g01540
malus_domestica	MD02G1012200.v1.1 MD15G1158000.v1.1
prunus_persica	Prupe.3G048400_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1
pyrus_communis	pycom02g01140 pycom15g14180
rosa_chinensis	RchiOBHm_Chr2g0086501
rosa_multiflora	Rmu_sc0005127.1_g000001 Rmu_sc0012559.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154510
rosa_rugosa	Rorug01G0467500
rosa_samantha	Rh2AG018300 Rh2CG018700 Rh2DG019600
rosa_wichuraiana	Rw2G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	4 cut(s)	5, 35, 358, 434
AcsI	RAATTY	2 cut(s)	311, 341
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	11, 454
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	247
AhdI	GACNNNNNGTC	1 cut(s)	121
AluBI	AGCT	4 cut(s)	142, 163, 235, 352
AluI	AGCT	4 cut(s)	142, 163, 235, 352
Alw26I	GTCTC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	72
ApeKI	GCWGC	5 cut(s)	22, 25, 235, 265, 363
ApoI	RAATTY	2 cut(s)	311, 341
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	270
AsuII	TTCGAA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	72
BbvI	GCAGC	5 cut(s)	9, 12, 222, 252, 375
BccI	CCATC	2 cut(s)	52, 161
BcoDI	GTCTC	1 cut(s)	57
BisI	GCNGC	6 cut(s)	5, 23, 26, 236, 266, 364
BlsI	GCNGC	6 cut(s)	6, 24, 27, 237, 267, 365
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	421
Bpu14I	TTCGAA	1 cut(s)	332
BseGI	GGATG	4 cut(s)	259, 385, 397, 409
BseXI	GCAGC	5 cut(s)	9, 12, 222, 252, 375
BseYI	CCCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	4 cut(s)	5, 35, 358, 434
BspT104I	TTCGAA	1 cut(s)	332
BssMI	GATC	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	318
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	4 cut(s)	259, 385, 397, 409
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 271
BstNSI	RCATGY	1 cut(s)	41
BstV1I	GCAGC	5 cut(s)	9, 12, 222, 252, 375
BtsCI	GGATG	4 cut(s)	259, 385, 397, 409
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	272
CfoI	GCGC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	10, 453
CviAII	CATG	2 cut(s)	38, 118
CviJI	RGCY	5 cut(s)	142, 163, 235, 274, 352
CviKI_1	RGCY	5 cut(s)	142, 163, 235, 274, 352
CviQI	GTAC	2 cut(s)	10, 453
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DrdI	GACNNNNNNGTC	1 cut(s)	208
DriI	GACNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	318
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	72
FaeI	CATG	2 cut(s)	41, 121
FaiI	YATR	9 cut(s)	20, 39, 119, 150, 303, 368, 370, 372, 377
FatI	CATG	2 cut(s)	37, 117
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	6 cut(s)	5, 23, 26, 236, 266, 364
FokI	GGATG	4 cut(s)	266, 392, 404, 416
Fsp4HI	GCNGC	6 cut(s)	5, 23, 26, 236, 266, 364
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	6 cut(s)	5, 23, 26, 236, 266, 364
GsaI	CCCAGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	41, 121
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HindIII	AAGCTT	2 cut(s)	161, 350
HinfI	GANTC	2 cut(s)	50, 329
Hpy166II	GTNNAC	3 cut(s)	91, 188, 213
Hpy188I	TCNGA	1 cut(s)	57
Hpy8I	GTNNAC	3 cut(s)	91, 188, 213
HpyAV	CCTTC	3 cut(s)	40, 165, 437
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	87, 451
HpyCH4V	TGCA	2 cut(s)	196, 238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 271
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	2 cut(s)	87, 451
Hsp92II	CATG	2 cut(s)	41, 121
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	232, 360
LpnPI	CCDG	4 cut(s)	128, 167, 256, 293
Lsp1109I	GCAGC	5 cut(s)	9, 12, 222, 252, 375
LweI	GCATC	1 cut(s)	421
MaeII	ACGT	2 cut(s)	87, 451
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	108, 335, 395
MluCI	AATT	2 cut(s)	311, 341
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	6 cut(s)	36, 319, 382, 388, 394, 415
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	3 cut(s)	156, 282, 345
MspA1I	CMGCKG	3 cut(s)	7, 142, 358
MwoI	GCNNNNNNNGC	2 cut(s)	34, 271
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	41, 121
NspI	RCATGY	1 cut(s)	41
NspV	TTCGAA	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	6 cut(s)	6, 24, 27, 237, 267, 365
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	142
PspXI	VCTCGAGB	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	2 cut(s)	11, 454
RsaNI	GTAC	2 cut(s)	10, 453
SaqAI	TTAA	3 cut(s)	156, 282, 345
SatI	GCNGC	6 cut(s)	5, 23, 26, 236, 266, 364
Sau3AI	GATC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	59
SetI	ASST	8 cut(s)	90, 144, 165, 176, 237, 354, 454, 458
SfaNI	GCATC	1 cut(s)	421
Sfr274I	CTCGAG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	311, 341
SsiI	CCGC	4 cut(s)	5, 35, 358, 434
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	90, 454
TaqI	TCGA	2 cut(s)	73, 332
TasI	AATT	2 cut(s)	311, 341
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	3 cut(s)	156, 282, 345
Tru9I	TTAA	3 cut(s)	156, 282, 345
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	5 cut(s)	22, 25, 235, 265, 363
TspDTI	ATGAA	2 cut(s)	134, 396
TspRI	CASTG	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	65
XapI	RAATTY	2 cut(s)	311, 341
XceI	RCATGY	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.