Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008708

Physical Location & Seq

Genomic Coordinates Forward (+)

91103539 .. 91111753

Gene Structure 8215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATTGGTCCAGAGAAGTGCTCGTTGTTGAAAGTGACATCATTAGCACCCAAAGGATTACCCGGTGCCGTTCCCGCAAAGCATAACCCGTTCCCGGCCGGTGGCGAAGGGTGTTTCGGGAATTTAGCCTGCAAAGTAAAGCCGGTTAAAACCCGGGTAAGGGAAGGGAAGCAGTTGAAGGGAAAAAGAGGAAGAAATATGCCTCTGTATGATTGTATGCTTCTGGCGAAGCCGCATGTAAAGAAGGAGGCTCTGTTGGACCTGGTTGCGAGAGTAAGCAAGCATGTTTTCCGACGAAATGGGGTTATTACTGACATGAAGTCCTTCGGCAATGTGCACTTGGGTTATGGTATTAAGAAGCTTGATGGCAGGTTTTATCAGGGTCAACTGATGCAGATGACTATGATGGCTACACCTAACATGAACAAGGAGCTGCATTACCTCAACAAGGAAGATCGGTTGCTACGCTGGCTCTTGGTTAAACACCGAGACACAAAGTATGGCATGGAATTTCTTAGCGAACAGGATACCAGAAATGAAATTAATAAGTTTCATCGGGGCAGCATATATGATATGGTTGAAGATGATGACGACGACGACGACGATGACGATGATGAATATGATGTGGACCGGGAAGGAAATAATATGGCTGAAGACGACGACGATGACGATGAATATGATGTGGACCAGGAAGGAAAGCAGATTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

237

Amino Acids

27.04

Weight (kDa)

5.44

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6	PF01250	70 - 161	6.9e-15	Ribosomal protein S6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18760 AT3G18760
fragaria_vesca	FvH4_1g01540 FvH4_1g01540 FvH4_1g01540 FvH4_1g01540
malus_domestica	MD02G1012200.v1.1 MD15G1158000.v1.1
prunus_persica	Prupe.3G048400_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1
pyrus_communis	pycom02g01140 pycom15g14180
rosa_chinensis	RchiOBHm_Chr2g0086501
rosa_multiflora	Rmu_sc0005127.1_g000001 Rmu_sc0012559.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154510
rosa_rugosa	Rorug01G0467500
rosa_samantha	Rh2AG018300 Rh2CG018700 Rh2DG019600
rosa_wichuraiana	Rw2G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	2 cut(s)	75, 233
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	121, 509
AcuI	CTGAAG	1 cut(s)	672
AfiI	CCNNNNNNNGG	5 cut(s)	94, 101, 159, 160, 448
AgsI	TTSAA	3 cut(s)	31, 178, 581
AhdI	GACNNNNNGTC	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	261, 687
AluBI	AGCT	2 cut(s)	361, 433
AluI	AGCT	2 cut(s)	361, 433
Alw21I	GWGCWC	2 cut(s)	23, 339
Alw26I	GTCTC	1 cut(s)	483
Alw44I	GTGCAC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	1 cut(s)	96
ApaLI	GTGCAC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	433, 561
ApoI	RAATTY	2 cut(s)	121, 509
AseI	ATTAAT	1 cut(s)	543
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	4 cut(s)	8, 259, 628, 685
AsuC2I	CCSGG	5 cut(s)	63, 95, 154, 155, 632
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	4 cut(s)	8, 259, 628, 685
BaeGI	GKGCMC	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	23, 339
BbvI	GCAGC	2 cut(s)	420, 573
BccI	CCATC	3 cut(s)	359, 400, 701
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	263, 689
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	5 cut(s)	63, 95, 154, 155, 632
BcoDI	GTCTC	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	360
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	3 cut(s)	233, 434, 562
BlsI	GCNGC	3 cut(s)	234, 435, 563
Bme1390I	CCNGG	7 cut(s)	63, 95, 154, 155, 263, 632, 689
Bme18I	GGWCC	4 cut(s)	8, 259, 628, 685
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	4 cut(s)	8, 259, 628, 685
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	7 cut(s)	63, 95, 154, 155, 263, 632, 689
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	660
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuMI	CCSGG	5 cut(s)	63, 95, 154, 155, 632
BsaJI	CCNNGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 101, 159, 160, 448
Bse118I	RCCGGY	2 cut(s)	98, 142
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	2 cut(s)	263, 689
BseDI	CCNNGG	1 cut(s)	153
BseLI	CCNNNNNNNGG	5 cut(s)	94, 101, 159, 160, 448
BseMI	GCAATG	1 cut(s)	337
BseSI	GKGCMC	1 cut(s)	339
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	420, 573
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	2 cut(s)	23, 339
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	6 cut(s)	63, 95, 99, 143, 154, 631
BslI	CCNNNNNNNGG	5 cut(s)	94, 101, 159, 160, 448
BsmAI	GTCTC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	23, 339
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	2 cut(s)	75, 233
BspANI	GGCC	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	2 cut(s)	98, 142
BssAI	RCCGGY	2 cut(s)	98, 142
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	454
Bst2UI	CCWGG	2 cut(s)	263, 689
BstC8I	GCNNGC	3 cut(s)	130, 281, 470
BstDEI	CTNAG	1 cut(s)	515
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 469
BstNI	CCWGG	2 cut(s)	263, 689
BstNSI	RCATGY	2 cut(s)	239, 287
BstSCI	CCNGG	7 cut(s)	61, 93, 152, 153, 261, 630, 687
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	420, 573
BstV2I	GAAGAC	1 cut(s)	660
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	98
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	130, 281, 470
Cfr10I	RCCGGY	2 cut(s)	98, 142
Cfr13I	GGNCC	4 cut(s)	8, 259, 628, 685
Cfr9I	CCCGGG	1 cut(s)	153
CsiI	ACCWGGT	1 cut(s)	261
CviAII	CATG	5 cut(s)	236, 284, 316, 421, 505
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DriI	GACNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EclXI	CGGCCG	1 cut(s)	96
Eco47I	GGWCC	4 cut(s)	8, 259, 628, 685
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	153
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	261, 687
FaeI	CATG	5 cut(s)	239, 287, 319, 424, 508
FatI	CATG	5 cut(s)	235, 283, 315, 420, 504
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	233, 434, 562
Fsp4HI	GCNGC	3 cut(s)	233, 434, 562
GluI	GCNGC	3 cut(s)	233, 434, 562
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	6 cut(s)	63, 95, 99, 143, 154, 631
Hin1II	CATG	5 cut(s)	239, 287, 319, 424, 508
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	359
HpaII	CCGG	6 cut(s)	63, 95, 99, 143, 154, 631
Hpy166II	GTNNAC	4 cut(s)	337, 386, 628, 685
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	2 cut(s)	11, 118
Hpy8I	GTNNAC	4 cut(s)	337, 386, 628, 685
Hpy99I	CGWCG	7 cut(s)	297, 596, 599, 602, 605, 662, 665
HpyAV	CCTTC	7 cut(s)	101, 158, 172, 238, 334, 629, 686
HpyCH4V	TGCA	4 cut(s)	132, 337, 394, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 469
HpyF3I	CTNAG	1 cut(s)	515
Hsp92II	CATG	5 cut(s)	239, 287, 319, 424, 508
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	2 cut(s)	420, 573
LweI	GCATC	1 cut(s)	381
MabI	ACCWGGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	4 cut(s)	204, 464, 593, 665
MhlI	GDGCHC	2 cut(s)	23, 339
MluCI	AATT	3 cut(s)	121, 509, 540
MmeI	TCCRAC	2 cut(s)	237, 316
MnlI	CCTC	4 cut(s)	182, 213, 241, 452
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	4 cut(s)	147, 354, 480, 543
MspI	CCGG	6 cut(s)	63, 95, 99, 143, 154, 631
MspR9I	CCNGG	7 cut(s)	63, 95, 154, 155, 263, 632, 689
MvaI	CCWGG	2 cut(s)	263, 689
MwoI	GCNNNNNNNGC	2 cut(s)	74, 469
NciI	CCSGG	5 cut(s)	63, 95, 154, 155, 632
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	5 cut(s)	239, 287, 319, 424, 508
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	2 cut(s)	239, 287
PcsI	WCGNNNNNNNCGW	4 cut(s)	597, 600, 606, 666
PdmI	GAANNNNTTC	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	234, 435, 563
PshBI	ATTAAT	1 cut(s)	543
Psp6I	CCWGG	2 cut(s)	261, 687
PspGI	CCWGG	2 cut(s)	261, 687
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	4 cut(s)	8, 259, 628, 685
SaqAI	TTAA	4 cut(s)	147, 354, 480, 543
SatI	GCNGC	3 cut(s)	233, 434, 562
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	4 cut(s)	8, 259, 628, 685
ScrFI	CCNGG	7 cut(s)	63, 95, 154, 155, 263, 632, 689
SduI	GDGCHC	2 cut(s)	23, 339
SetI	ASST	6 cut(s)	264, 363, 374, 418, 435, 444
SexAI	ACCWGGT	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	381
SinI	GGWCC	4 cut(s)	8, 259, 628, 685
SmaI	CCCGGG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	121, 509, 540
SsiI	CCGC	2 cut(s)	75, 233
StyD4I	CCNGG	7 cut(s)	61, 93, 152, 153, 261, 630, 687
TasI	AATT	3 cut(s)	121, 509, 540
TauI	GCSGC	1 cut(s)	235
Tru1I	TTAA	4 cut(s)	147, 354, 480, 543
Tru9I	TTAA	4 cut(s)	147, 354, 480, 543
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	433, 561
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	6 cut(s)	332, 437, 542, 552, 630, 687
TspMI	CCCGGG	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	335
VpaK11BI	GGWCC	4 cut(s)	8, 259, 628, 685
VspI	ATTAAT	1 cut(s)	543
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	2 cut(s)	121, 509
XceI	RCATGY	2 cut(s)	239, 287
XmaI	CCCGGG	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.