Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012559.1

Orthogroup ID

OG0008708

Physical Location & Seq

Genomic Coordinates Forward (+)

10115 .. 11875

Gene Structure 1761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012559.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgctcctggcgaagccgcatgtaaagaaggaggctctgttggacctggttgcgagagtaagcaagcatgttttccgacgaaatgggatcattactgacatgaagtccttcggcactgtgcacttgggttatggtattaagaagcttgatggcagattttatcagggtcaactgatgcagatgactatgatggctacacctaacatgaacaaggagctgcattacctcaacaaggaagatcggttgctacgctggctcttggttaaacaccgagacacaaagtatggcatggaatttcttagcgaacaggataccagaaatgaaattaataagtttcaacggggcagcatatatgatatggttgaagatgacgacgatgacgacgacgatgacgatgatgaatatgatgtggaccgggaaggaaataatatggctgaagacgacaacgacgacgacgatgaatatgatgtggaccaggaaggaaagcagattgatggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

166

Amino Acids

19.52

Weight (kDa)

4.51

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18760 AT3G18760
fragaria_vesca	FvH4_1g01540 FvH4_1g01540 FvH4_1g01540 FvH4_1g01540
malus_domestica	MD02G1012200.v1.1 MD15G1158000.v1.1
prunus_persica	Prupe.3G048400_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1 Prupe.7G253200_v2.0.a1
pyrus_communis	pycom02g01140 pycom15g14180
rosa_chinensis	RchiOBHm_Chr2g0086501
rosa_multiflora	Rmu_sc0005127.1_g000001 Rmu_sc0012559.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154510
rosa_rugosa	Rorug01G0467500
rosa_samantha	Rh2AG018300 Rh2CG018700 Rh2DG019600
rosa_wichuraiana	Rw2G001530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	338, 365
AhdI	GACNNNNNGTC	1 cut(s)	103
AjnI	CCWGG	3 cut(s)	6, 45, 474
AluBI	AGCT	2 cut(s)	145, 217
AluI	AGCT	2 cut(s)	145, 217
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	267
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	95
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	217, 345
ApoI	RAATTY	1 cut(s)	293
AseI	ATTAAT	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	43, 412, 472
AsuC2I	CCSGG	1 cut(s)	416
AvaII	GGWCC	3 cut(s)	43, 412, 472
BaeGI	GKGCMC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	204, 357
BccI	CCATC	3 cut(s)	143, 184, 488
BciT130I	CCWGG	3 cut(s)	8, 47, 476
BciVI	GTATCC	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	3 cut(s)	17, 218, 346
BlsI	GCNGC	3 cut(s)	18, 219, 347
Bme1390I	CCNGG	4 cut(s)	8, 47, 416, 476
Bme18I	GGWCC	3 cut(s)	43, 412, 472
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	43, 412, 472
BmrFI	CCNGG	4 cut(s)	8, 47, 416, 476
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	8, 47, 476
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	204, 357
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	87, 238
BspACI	CCGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	95
BssMI	GATC	2 cut(s)	87, 238
Bst2UI	CCWGG	3 cut(s)	8, 47, 476
Bst4CI	ACNGT	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	65, 254
BstDEI	CTNAG	1 cut(s)	299
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstKTI	GATC	2 cut(s)	90, 241
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	87, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	3 cut(s)	8, 47, 476
BstNSI	RCATGY	2 cut(s)	23, 71
BstSCI	CCNGG	4 cut(s)	6, 45, 414, 474
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	204, 357
BstV2I	GAAGAC	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	65, 254
Cfr13I	GGNCC	3 cut(s)	43, 412, 472
CsiI	ACCWGGT	1 cut(s)	45
CviAII	CATG	5 cut(s)	20, 68, 100, 205, 289
CviJI	RGCY	7 cut(s)	16, 35, 145, 194, 217, 256, 434
CviKI_1	RGCY	7 cut(s)	16, 35, 145, 194, 217, 256, 434
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	2 cut(s)	89, 240
DpnII	GATC	2 cut(s)	87, 238
DriI	GACNNNNNGTC	1 cut(s)	103
Eam1105I	GACNNNNNGTC	1 cut(s)	103
Eco47I	GGWCC	3 cut(s)	43, 412, 472
Eco57I	CTGAAG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoRII	CCWGG	3 cut(s)	6, 45, 474
FaeI	CATG	5 cut(s)	23, 71, 103, 208, 292
FatI	CATG	5 cut(s)	19, 67, 99, 204, 288
Fnu4HI	GCNGC	3 cut(s)	17, 218, 346
Fsp4HI	GCNGC	3 cut(s)	17, 218, 346
GluI	GCNGC	3 cut(s)	17, 218, 346
HapII	CCGG	1 cut(s)	415
Hin1II	CATG	5 cut(s)	23, 71, 103, 208, 292
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	143
HpaII	CCGG	1 cut(s)	415
Hpy166II	GTNNAC	4 cut(s)	121, 170, 412, 472
Hpy188I	TCNGA	1 cut(s)	77
Hpy8I	GTNNAC	4 cut(s)	121, 170, 412, 472
Hpy99I	CGWCG	7 cut(s)	81, 377, 386, 389, 452, 455, 458
HpyAV	CCTTC	4 cut(s)	22, 118, 413, 473
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	121, 178, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	5 cut(s)	23, 71, 103, 208, 292
Kzo9I	GATC	2 cut(s)	87, 238
LmnI	GCTCC	2 cut(s)	9, 214
Lsp1109I	GCAGC	2 cut(s)	204, 357
LweI	GCATC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	45
MalI	GATC	2 cut(s)	89, 240
MboI	GATC	2 cut(s)	87, 238
MboII	GAAGA	3 cut(s)	248, 377, 449
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	293, 324
MmeI	TCCRAC	2 cut(s)	21, 100
MnlI	CCTC	2 cut(s)	25, 236
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	3 cut(s)	138, 264, 327
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	4 cut(s)	8, 47, 416, 476
MvaI	CCWGG	3 cut(s)	8, 47, 476
MwoI	GCNNNNNNNGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	2 cut(s)	87, 238
NlaIII	CATG	5 cut(s)	23, 71, 103, 208, 292
NspI	RCATGY	2 cut(s)	23, 71
PcsI	WCGNNNNNNNCGW	5 cut(s)	378, 381, 390, 447, 453
PdmI	GAANNNNTTC	1 cut(s)	107
PkrI	GCNGC	3 cut(s)	18, 219, 347
PshBI	ATTAAT	1 cut(s)	327
Psp6I	CCWGG	3 cut(s)	6, 45, 474
PspGI	CCWGG	3 cut(s)	6, 45, 474
PspPI	GGNCC	3 cut(s)	43, 412, 472
SaqAI	TTAA	3 cut(s)	138, 264, 327
SatI	GCNGC	3 cut(s)	17, 218, 346
Sau3AI	GATC	2 cut(s)	87, 238
Sau96I	GGNCC	3 cut(s)	43, 412, 472
ScrFI	CCNGG	4 cut(s)	8, 47, 416, 476
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	48, 147, 202, 219, 228
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	165
SinI	GGWCC	3 cut(s)	43, 412, 472
Sse9I	AATT	2 cut(s)	293, 324
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	4 cut(s)	6, 45, 414, 474
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	2 cut(s)	293, 324
TauI	GCSGC	1 cut(s)	19
Tru1I	TTAA	3 cut(s)	138, 264, 327
Tru9I	TTAA	3 cut(s)	138, 264, 327
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	2 cut(s)	217, 345
TspDTI	ATGAA	5 cut(s)	116, 221, 336, 414, 474
TspRI	CASTG	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	119
VpaK11BI	GGWCC	3 cut(s)	43, 412, 472
VspI	ATTAAT	1 cut(s)	327
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	2 cut(s)	23, 71
XmnI	GAANNNNTTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.