AT3G19120

Plant transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015047
Physical Location & Seq
Reverse (-)
6609350 .. 6611138
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19120.1

Sequence Viewer

Length: 1341 bp
ATGGAAGAAGCTTTCATGGCGATGCTCTCACATCTTCTCCATCTCCAAAACTCATTAGATCCTACAAGCACTCTCTTCTCTTCCGCATCCACATCTTCACAGTCTTCAACCACACCTTCCTCCCTCCTCTCCACTTCCTCCGCCGCGCCTTTACTCTTCTTCACTCTCGCATCTCTCCTCTCCTTCCTCGCCGTCAACAGATCTTCAACCGAATCCTCATCTTCCTCAGAATCACCTTCCCCTTCCCCTCCTCCGCCTCTTGCCGACGGCGATTACTCCGTCGCTGCCTTCCGTGCCCTAACCACAGACCACATCTGGTCACTCGATGCGCCTCTCCGCGACGCTCGTTGGCGCTCATTGTACGGTCTTTCCTACCCAGTCTTCATCACCGTCGTCGACAAGCTCAAACCATTCATCACCGCTTCAAATCTCTCTCTCCCCGCCGATTACGCCGTCGCTATGGTCCTCTCTCGTCTCGCTCATGGCTGCTCAGCTAAAACCCTAGCTTCTCGCTACTCACTAGATCCATACCTCATCTCCAAGATCACAAACATGGTCACACGTCTCTTAGCCACCAAGCTATATCCAGAATTCATCAAAATCCCCGTCGGAAAACGGAGATTGATCGAAACGACTCAGGGATTCGAAGAACTCACCTCTCTCCCCAACATTTGCGGCGCCATTGATAGTACTCCGGTGAAGCTCAGACGCCGCACGAAACTAAACCCTAGAAACATTTACGGTTGCAAGTACGGATACGACGCCGTTTTGCTTCAGGTTGTTGCTGATCACAAGAAGATCTTTTGGGACGTTTGTGTGAAAGCTCCAGGTGGAGAAGACGACTCTTCTCATTTCAGAGATAGTCTTCTATATAAGAGGCTTACTTCAGGAGACATTGTTTGGGAGAAAGTTATCAATATTAGAGGTCACCATGTGAGACCATACATTGTTGGAGATTGGTGTTATCCTCTTCTCTCATTCCTGATGACTCCATTTTCACCAAATGGCTCTGGTACGCCACCGGAGAATCTATTCGATGGAATGTTGATGAAAGGAAGGTCAGTGGTGGTGGAAGCTATTGGATTGCTCAAGGCTAGATGGAAGATTCTTCAGAGTTTGAATGTTGGTGTGAACCATGCTCCTCAGACTATTGTGGCTTGTTGTGTGTTGCATAATCTTTGTCAGATTGCTAGAGAACCTGAACCGGAGATTTGGAAGGATCCAGATGAAGCTGGAACGCCTGCAAGAGTTTTGGAGAGTGAGAGGCAGTTTTACTATTACGGGGAGAGTTTGAGGCAAGCATTGGCAGAAGATTTACACCAGAGACTCTCCTCGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

446

Amino Acids

49.42

Weight (kDa)

8.32

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 218 - 393 5.4e-07 Plant transposon protein
DDE_Tnp_4 PF13359 228 - 392 5.7e-18 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19120
fragaria_vesca FvH4_2g06711
prunus_persica Prupe.8G119100_v2.0.a1
pyrus_communis pycom05g06910
rosa_chinensis RchiOBHm_Chr6g0258821
rosa_laevigata RLG00000014583
rosa_multiflora Rmu_co8359799.1_g000001 Rmu_sc0004485.1_g000014
rosa_roxburghii Rroxscaffold_7G00206090
rosa_rugosa Rorug05G0583500 Rorug05G0583600
rosa_samantha Rh6AG100100 Rh6BG091600 Rh6CG089100 Rh6DG083400
rosa_wichuraiana Rw6G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1333
AccB1I GGYRCC 1 cut(s) 677
AccI GTMKAC 1 cut(s) 396
AccII CGCG 2 cut(s) 146, 339
AciI CCGC 9 cut(s) 84, 141, 144, 254, 337, 420, 441, 675, 712
AclWI GGATC 4 cut(s) 53, 518, 1214, 1227
AcsI RAATTY 1 cut(s) 590
AcuI CTGAAG 3 cut(s) 758, 870, 1094
AcyI GRCGYC 3 cut(s) 678, 709, 762
AdeI CACNNNGTG 1 cut(s) 934
AfaI GTAC 4 cut(s) 362, 691, 752, 1015
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 4 cut(s) 108, 207, 426, 1120
AjiI CACGTC 1 cut(s) 563
AjnI CCWGG 1 cut(s) 826
AluBI AGCT 9 cut(s) 11, 403, 494, 506, 580, 703, 824, 1076, 1232
AluI AGCT 9 cut(s) 11, 403, 494, 506, 580, 703, 824, 1076, 1232
Alw26I GTCTC 5 cut(s) 479, 569, 885, 931, 1318
AlwI GGATC 4 cut(s) 53, 518, 1214, 1227
Ama87I CYCGRG 1 cut(s) 1333
ApeKI GCWGC 2 cut(s) 284, 486
ApoI RAATTY 1 cut(s) 590
ArsI GACNNNNNNTTYG 2 cut(s) 591, 623
Asp700I GAANNNNTTC 1 cut(s) 1031
AspLEI GCGC 4 cut(s) 148, 331, 354, 680
AspS9I GGNCC 1 cut(s) 463
AsuHPI GGTGA 7 cut(s) 225, 379, 409, 646, 709, 920, 990
AsuII TTCGAA 1 cut(s) 645
AvaI CYCGRG 1 cut(s) 1333
AvaII GGWCC 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 298
BamHI GGATCC 1 cut(s) 1219
BanI GGYRCC 1 cut(s) 677
BbsI GAAGAC 4 cut(s) 96, 373, 843, 857
BbvI GCAGC 2 cut(s) 271, 473
BccI CCATC 3 cut(s) 48, 1031, 1092
BceAI ACGGC 4 cut(s) 176, 283, 437, 749
BciT130I CCWGG 1 cut(s) 828
BciVI GTATCC 1 cut(s) 749
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 5 cut(s) 479, 569, 885, 931, 1318
BfaI CTAG 5 cut(s) 503, 521, 729, 1095, 1191
BfoI RGCGCY 2 cut(s) 355, 681
BfuI GTATCC 1 cut(s) 749
BglII AGATCT 2 cut(s) 200, 798
BisI GCNGC 5 cut(s) 144, 285, 487, 676, 712
BlpI GCTNAGC 1 cut(s) 490
BlsI GCNGC 5 cut(s) 145, 286, 488, 677, 713
BmcAI AGTACT 1 cut(s) 691
Bme1390I CCNGG 1 cut(s) 828
Bme18I GGWCC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 1333
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 2 cut(s) 679, 1221
BmrFI CCNGG 1 cut(s) 828
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 4 cut(s) 12, 95, 179, 316
BmuI ACTGGG 1 cut(s) 371
BpiI GAAGAC 4 cut(s) 96, 373, 843, 857
BpmI CTGGAG 1 cut(s) 810
Bpu1102I GCTNAGC 1 cut(s) 490
Bpu14I TTCGAA 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 1073
BsaHI GRCGYC 3 cut(s) 678, 709, 762
BsaI GGTCTC 1 cut(s) 931
BsaWI WCCGGW 3 cut(s) 694, 1021, 1204
BsaXI ACNNNNNCTCC 6 cut(s) 21, 51, 521, 551, 882, 912
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 828
BseGI GGATG 1 cut(s) 86
BseMII CTCAG 5 cut(s) 240, 504, 650, 718, 1157
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 5 cut(s) 116, 167, 240, 1131, 1321
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 2 cut(s) 271, 473
Bsh1236I CGCG 2 cut(s) 146, 339
BshNI GGYRCC 1 cut(s) 677
BsiHKCI CYCGRG 1 cut(s) 1333
BsiSI CCGG 3 cut(s) 695, 1022, 1205
BslFI GGGAC 1 cut(s) 821
BsmAI GTCTC 5 cut(s) 479, 569, 885, 931, 1318
BsmBI CGTCTC 2 cut(s) 479, 569
BsmFI GGGAC 1 cut(s) 821
Bso31I GGTCTC 1 cut(s) 931
BsoBI CYCGRG 1 cut(s) 1333
Bsp119I TTCGAA 1 cut(s) 645
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 8 cut(s) 58, 200, 523, 543, 624, 787, 798, 1219
Bsp1720I GCTNAGC 1 cut(s) 490
BspACI CCGC 9 cut(s) 84, 141, 144, 254, 337, 420, 441, 675, 712
BspCNI CTCAG 5 cut(s) 239, 503, 649, 717, 1156
BspFNI CGCG 2 cut(s) 146, 339
BspLI GGNNCC 2 cut(s) 679, 1221
BspPI GGATC 4 cut(s) 53, 518, 1214, 1227
BspT104I TTCGAA 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 931
BsrI ACTGG 1 cut(s) 377
BssMI GATC 8 cut(s) 58, 200, 523, 543, 624, 787, 798, 1219
BssNI GRCGYC 3 cut(s) 678, 709, 762
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 4 cut(s) 102, 365, 391, 743
Bst6I CTCTTC 5 cut(s) 80, 85, 161, 850, 975
BstACI GRCGYC 3 cut(s) 678, 709, 762
BstBI TTCGAA 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 1242, 1299
BstDEI CTNAG 6 cut(s) 226, 490, 568, 636, 704, 1143
BstEII GGTNACC 1 cut(s) 926
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 146, 339
BstH2I RGCGCY 2 cut(s) 355, 681
BstHHI GCGC 4 cut(s) 148, 331, 354, 680
BstKTI GATC 8 cut(s) 61, 203, 526, 546, 627, 790, 801, 1222
BstMAI GTCTC 5 cut(s) 479, 569, 885, 931, 1318
BstMBI GATC 8 cut(s) 58, 200, 523, 543, 624, 787, 798, 1219
BstMWI GCNNNNNNNGC 3 cut(s) 17, 293, 449
BstNI CCWGG 1 cut(s) 828
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 1 cut(s) 826
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 2 cut(s) 146, 339
BstV1I GCAGC 2 cut(s) 271, 473
BstV2I GAAGAC 4 cut(s) 96, 373, 843, 857
BstX2I RGATCY 5 cut(s) 58, 200, 523, 798, 1219
BstYI RGATCY 5 cut(s) 58, 200, 523, 798, 1219
BsuI GTATCC 1 cut(s) 749
BtgZI GCGATG 1 cut(s) 35
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 1068
Cac8I GCNNGC 2 cut(s) 1242, 1299
CfoI GCGC 4 cut(s) 148, 331, 354, 680
Cfr13I GGNCC 1 cut(s) 463
CseI GACGC 3 cut(s) 350, 717, 770
Csp6I GTAC 4 cut(s) 361, 690, 751, 1014
CviAII CATG 5 cut(s) 16, 482, 553, 932, 1136
CviQI GTAC 4 cut(s) 361, 690, 751, 1014
DdeI CTNAG 6 cut(s) 226, 490, 568, 636, 704, 1143
DinI GGCGCC 1 cut(s) 679
DpnI GATC 8 cut(s) 60, 202, 525, 545, 626, 789, 800, 1221
DpnII GATC 8 cut(s) 58, 200, 523, 543, 624, 787, 798, 1219
DraIII CACNNNGTG 1 cut(s) 934
Eam1104I CTCTTC 5 cut(s) 80, 85, 161, 850, 975
EarI CTCTTC 5 cut(s) 80, 85, 161, 850, 975
EciI GGCGGA 2 cut(s) 130, 243
Eco31I GGTCTC 1 cut(s) 931
Eco47I GGWCC 1 cut(s) 463
Eco57I CTGAAG 3 cut(s) 758, 870, 1094
Eco88I CYCGRG 1 cut(s) 1333
Eco91I GGTNACC 1 cut(s) 926
EcoO65I GGTNACC 1 cut(s) 926
EcoRI GAATTC 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 826
EgeI GGCGCC 1 cut(s) 679
EheI GGCGCC 1 cut(s) 679
Esp3I CGTCTC 2 cut(s) 479, 569
FaeI CATG 5 cut(s) 19, 485, 556, 935, 1139
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FaqI GGGAC 1 cut(s) 821
FatI CATG 5 cut(s) 15, 481, 552, 931, 1135
FauI CCCGC 1 cut(s) 448
FbaI TGATCA 1 cut(s) 787
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 5 cut(s) 144, 285, 487, 676, 712
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 5 cut(s) 144, 285, 487, 676, 712
FspBI CTAG 5 cut(s) 503, 521, 729, 1095, 1191
GlaI GCGC 4 cut(s) 147, 330, 353, 679
GluI GCNGC 5 cut(s) 144, 285, 487, 676, 712
GsuI CTGGAG 1 cut(s) 810
HaeII RGCGCY 2 cut(s) 355, 681
HapII CCGG 3 cut(s) 695, 1022, 1205
HgaI GACGC 3 cut(s) 350, 717, 770
HhaI GCGC 4 cut(s) 148, 331, 354, 680
Hin1I GRCGYC 3 cut(s) 678, 709, 762
Hin1II CATG 5 cut(s) 19, 485, 556, 935, 1139
Hin6I GCGC 4 cut(s) 146, 329, 352, 678
HinP1I GCGC 4 cut(s) 146, 329, 352, 678
HincII GTYRAC 2 cut(s) 196, 397
HindII GTYRAC 2 cut(s) 196, 397
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 9 cut(s) 212, 230, 634, 642, 842, 988, 1027, 1105, 1326
HpaII CCGG 3 cut(s) 695, 1022, 1205
HphI GGTGA 7 cut(s) 225, 379, 409, 646, 709, 920, 990
Hpy166II GTNNAC 3 cut(s) 196, 397, 1132
Hpy188I TCNGA 7 cut(s) 229, 611, 707, 857, 1113, 1146, 1185
Hpy188III TCNNGA 4 cut(s) 587, 888, 982, 1223
Hpy8I GTNNAC 3 cut(s) 196, 397, 1132
Hpy99I CGWCG 8 cut(s) 269, 284, 344, 395, 398, 458, 611, 764
HpyAV CCTTC 7 cut(s) 126, 193, 246, 252, 298, 1050, 1210
HpyCH4III ACNGT 4 cut(s) 102, 365, 391, 743
HpyCH4IV ACGT 2 cut(s) 562, 810
HpyCH4V TGCA 3 cut(s) 747, 1171, 1244
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 293, 449
HpyF3I CTNAG 6 cut(s) 226, 490, 568, 636, 704, 1143
HpySE526I ACGT 2 cut(s) 562, 810
Hsp92I GRCGYC 3 cut(s) 678, 709, 762
Hsp92II CATG 5 cut(s) 19, 485, 556, 935, 1139
HspAI GCGC 4 cut(s) 146, 329, 352, 678
KasI GGCGCC 1 cut(s) 677
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 8 cut(s) 58, 200, 523, 543, 624, 787, 798, 1219
LmnI GCTCC 2 cut(s) 829, 1144
Lsp1109I GCAGC 2 cut(s) 271, 473
LweI GCATC 4 cut(s) 12, 95, 179, 316
MaeI CTAG 5 cut(s) 503, 521, 729, 1095, 1191
MaeII ACGT 2 cut(s) 562, 810
MaeIII GTNAC 3 cut(s) 318, 556, 926
MalI GATC 8 cut(s) 60, 202, 525, 545, 626, 789, 800, 1221
MboI GATC 8 cut(s) 58, 200, 523, 543, 624, 787, 798, 1219
MflI RGATCY 5 cut(s) 58, 200, 523, 798, 1219
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 1 cut(s) 590
Mly113I GGCGCC 1 cut(s) 678
MlyI GAGTC 4 cut(s) 628, 836, 982, 1320
MmeI TCCRAC 2 cut(s) 589, 931
MroXI GAANNNNTTC 1 cut(s) 1031
MslI CAYNNNNRTG 2 cut(s) 20, 551
MspI CCGG 3 cut(s) 695, 1022, 1205
MspR9I CCNGG 1 cut(s) 828
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 2 cut(s) 146, 339
MwoI GCNNNNNNNGC 3 cut(s) 17, 293, 449
NarI GGCGCC 1 cut(s) 678
NdeII GATC 8 cut(s) 58, 200, 523, 543, 624, 787, 798, 1219
NlaIII CATG 5 cut(s) 19, 485, 556, 935, 1139
NlaIV GGNNCC 2 cut(s) 679, 1221
NmuCI GTSAC 3 cut(s) 318, 556, 926
NspV TTCGAA 1 cut(s) 645
PaeR7I CTCGAG 1 cut(s) 1333
PdmI GAANNNNTTC 1 cut(s) 1031
PfeI GAWTC 5 cut(s) 212, 230, 642, 1027, 1105
PkrI GCNGC 5 cut(s) 145, 286, 488, 677, 713
PleI GAGTC 4 cut(s) 628, 836, 982, 1320
PluTI GGCGCC 1 cut(s) 681
PpsI GAGTC 4 cut(s) 628, 836, 982, 1320
Psp6I CCWGG 1 cut(s) 826
PspEI GGTNACC 1 cut(s) 926
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 2 cut(s) 679, 1221
PspPI GGNCC 1 cut(s) 463
PspXI VCTCGAGB 1 cut(s) 1333
PsuI RGATCY 5 cut(s) 58, 200, 523, 798, 1219
RsaI GTAC 4 cut(s) 362, 691, 752, 1015
RsaNI GTAC 4 cut(s) 361, 690, 751, 1014
RseI CAYNNNNRTG 2 cut(s) 20, 551
SalI GTCGAC 1 cut(s) 395
SatI GCNGC 5 cut(s) 144, 285, 487, 676, 712
Sau3AI GATC 8 cut(s) 58, 200, 523, 543, 624, 787, 798, 1219
Sau96I GGNCC 1 cut(s) 463
ScaI AGTACT 1 cut(s) 691
SchI GAGTC 4 cut(s) 628, 836, 982, 1320
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 4 cut(s) 12, 95, 179, 316
SfoI GGCGCC 1 cut(s) 679
Sfr274I CTCGAG 1 cut(s) 1333
SfuI TTCGAA 1 cut(s) 645
SinI GGWCC 1 cut(s) 463
SlaI CTCGAG 1 cut(s) 1333
SmiMI CAYNNNNRTG 2 cut(s) 20, 551
SmlI CTYRAG 2 cut(s) 1088, 1333
SmoI CTYRAG 2 cut(s) 1088, 1333
Sse9I AATT 1 cut(s) 590
SsiI CCGC 9 cut(s) 84, 141, 144, 254, 337, 420, 441, 675, 712
SspDI GGCGCC 1 cut(s) 677
SspI AATATT 1 cut(s) 919
SspMI CTAG 5 cut(s) 503, 521, 729, 1095, 1191
StyD4I CCNGG 1 cut(s) 826
TaaI ACNGT 4 cut(s) 102, 365, 391, 743
TaiI ACGT 2 cut(s) 565, 813
TaqI TCGA 6 cut(s) 324, 396, 627, 645, 1035, 1334
TasI AATT 1 cut(s) 590
TatI WGTACW 1 cut(s) 689
TauI GCSGC 3 cut(s) 146, 678, 714
TfiI GAWTC 5 cut(s) 212, 230, 642, 1027, 1105
TscAI CASTG 1 cut(s) 1068
TseFI GTSAC 3 cut(s) 318, 556, 926
TseI GCWGC 2 cut(s) 284, 486
Tsp45I GTSAC 3 cut(s) 318, 556, 926
TspDTI ATGAA 6 cut(s) 4, 373, 403, 583, 1064, 1242
TspGWI ACGGA 4 cut(s) 268, 281, 631, 768
TspRI CASTG 1 cut(s) 1068
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 1 cut(s) 590
XhoI CTCGAG 1 cut(s) 1333
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 1031
XspI CTAG 5 cut(s) 503, 521, 729, 1095, 1191
ZrmI AGTACT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.