pycom05g06910

nuclease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
9772086 .. 9772375
290 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06910.2

Sequence Viewer

Length: 198 bp
ATGGCAGATCACAAGAAAATCTTCTGGGATGTGTGTATGAAAGCCCCTGGTGGCACATACTACGCCACCCATTTTAGAGATAATAATTTATACAATAAGTTGACTTCCGACAATGTATGGGAGAAGATAATCAAGGGGGACTCCTGCCCAGAACCTGTTTATCAGAATGCTTATGAAAGGGAGGTCTACTATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.69

Weight (kDa)

6.03

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19120
fragaria_vesca FvH4_2g06711
prunus_persica Prupe.8G119100_v2.0.a1
pyrus_communis pycom05g06910
rosa_chinensis RchiOBHm_Chr6g0258821
rosa_laevigata RLG00000014583
rosa_multiflora Rmu_co8359799.1_g000001 Rmu_sc0004485.1_g000014
rosa_roxburghii Rroxscaffold_7G00206090
rosa_rugosa Rorug05G0583500 Rorug05G0583600
rosa_samantha Rh6AG100100 Rh6BG091600 Rh6CG089100 Rh6DG083400
rosa_wichuraiana Rw6G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 46
AlwNI CAGNNNCTG 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 34
CaiI CAGNNNCTG 1 cut(s) 155
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 46
FaiI YATR 6 cut(s) 38, 58, 91, 118, 174, 192
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 152
FblI GTMKAC 1 cut(s) 186
FokI GGATG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 102, 187
Hpy188I TCNGA 2 cut(s) 109, 165
Hpy8I GTNNAC 2 cut(s) 102, 187
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 6 cut(s) 10, 33, 60, 157, 162, 168
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 13, 136
MluCI AATT 1 cut(s) 85
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 1 cut(s) 175
MroXI GAANNNNTTC 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 48
NdeII GATC 1 cut(s) 7
PctI GAATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 155
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 48
SetI ASST 2 cut(s) 157, 186
SgeI CNNG 8 cut(s) 25, 37, 59, 60, 145, 156, 161, 167
Sse9I AATT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 46
TasI AATT 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 53, 189
XmiI GTMKAC 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.