Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014154

Physical Location & Seq

Genomic Coordinates Forward (+)

6659155 .. 6660852

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTCCGATTATACCCTAATTGCTCTCTGCCTTCTCACAGACCTCTCGTTTTCCTTCCTCGTCTTCCTTCTCGCTCCCTCCGTTGCCGCGCCGCCGCTGATATTCCCCTTGGTGACGGAATCCGATTACCTCGAGAAGCGGATTCAACCTCTGACACGGCGAGGTCTCGGGATGTTTCCGTCGCCGCCGGTGGGAATGGTGAAGGTGCTAAGTGGAGGAAGAGGAGGTTGCTCTGGTCGAAAAGTGGAGAGAGTTACTTGGTAGATGATGGCGACGCGCTTCCTCTTCCTATGACTTATCCTGATACATCCCCTGTGTCGCCGGATGTGATTGACCGGAGGTTGCAATGTGATCCTGTAGTCGAGGATTGCCGGGAAGTGGTTTATGAATGGACTGGAAAGTGTAGAAGTTGCCAAGGATCTGGAACTGTCAGCTATTACAAGAAAAGGGGTAAAGAGGTTATATGCAAATGCATACCCTGCCAAGGGATAGGATATGTGCAGAAGATAACATCTCGGACGGACATTGAAGTGATGGAAGATTTGGATAATGAACCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0016853 GO:0016860 GO:0016864 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071840 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.84

Weight (kDa)

8.05

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19220
fragaria_vesca	FvH4_2g06130 FvH4_2g06130
malus_domestica	MD10G1094200.v1.1
prunus_persica	Prupe.8G124000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257061
rosa_laevigata	RLG00000014674
rosa_multiflora	Rmu_sc0000659.1_g000009 Rmu_sc0038017.1_g000001 Rmu_sc0038018.1_g000001
rosa_roxburghii	Rroxscaffold_7G00208470
rosa_rugosa	Rorug05G0575500
rosa_samantha	Rh6AG093500 Rh6BG084300 Rh6CG081000 Rh6DG076400
rosa_wichuraiana	Rw6G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	90, 278
AciI	CCGC	5 cut(s)	88, 93, 96, 140, 186
AclWI	GGATC	2 cut(s)	347, 427
AfiI	CCNNNNNNNGG	4 cut(s)	192, 379, 485, 486
AgsI	TTSAA	2 cut(s)	147, 530
AluBI	AGCT	1 cut(s)	435
AluI	AGCT	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	347, 427
Ama87I	CYCGRG	2 cut(s)	132, 168
AspLEI	GCGC	2 cut(s)	92, 280
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	125, 212
AvaI	CYCGRG	2 cut(s)	132, 168
BbsI	GAAGAC	1 cut(s)	56
BccI	CCATC	2 cut(s)	263, 529
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	4 cut(s)	88, 93, 96, 186
BlsI	GCNGC	4 cut(s)	89, 94, 97, 187
Bme1390I	CCNGG	1 cut(s)	374
BmeT110I	CYCGRG	2 cut(s)	132, 168
BmrFI	CCNGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	109, 415, 484
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 379, 485, 486
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	353
BseDI	CCNNGG	3 cut(s)	109, 415, 484
BseGI	GGATG	3 cut(s)	178, 308, 331
BseLI	CCNNNNNNNGG	4 cut(s)	192, 379, 485, 486
BseMI	GCAATG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	521
Bsh1236I	CGCG	2 cut(s)	90, 278
BsiHKCI	CYCGRG	2 cut(s)	132, 168
BsiSI	CCGG	4 cut(s)	189, 323, 337, 373
BslI	CCNNNNNNNGG	4 cut(s)	192, 379, 485, 486
BsmAI	GTCTC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	2 cut(s)	132, 168
Bsp143I	GATC	2 cut(s)	352, 419
BspACI	CCGC	5 cut(s)	88, 93, 96, 140, 186
BspFNI	CGCG	2 cut(s)	90, 278
BspPI	GGATC	2 cut(s)	347, 427
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	109, 415, 484
BssMI	GATC	2 cut(s)	352, 419
BssT1I	CCWWGG	3 cut(s)	109, 415, 484
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	2 cut(s)	215, 291
BstAPI	GCANNNNNTGC	1 cut(s)	480
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	178, 308, 331
BstFNI	CGCG	2 cut(s)	90, 278
BstHHI	GCGC	2 cut(s)	92, 280
BstKTI	GATC	2 cut(s)	355, 422
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	2 cut(s)	352, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	2 cut(s)	90, 278
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	178, 308, 331
CfoI	GCGC	2 cut(s)	92, 280
Cfr10I	RCCGGY	1 cut(s)	188
CseI	GACGC	1 cut(s)	284
CviJI	RGCY	1 cut(s)	435
CviKI_1	RGCY	1 cut(s)	435
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	354, 421
DpnII	GATC	2 cut(s)	352, 419
Eam1104I	CTCTTC	2 cut(s)	215, 291
EarI	CTCTTC	2 cut(s)	215, 291
Eco130I	CCWWGG	3 cut(s)	109, 415, 484
Eco31I	GGTCTC	1 cut(s)	171
Eco88I	CYCGRG	2 cut(s)	132, 168
EcoT14I	CCWWGG	3 cut(s)	109, 415, 484
EcoT22I	ATGCAT	1 cut(s)	476
ErhI	CCWWGG	3 cut(s)	109, 415, 484
FaiI	YATR	7 cut(s)	13, 293, 387, 464, 466, 476, 498
Fnu4HI	GCNGC	4 cut(s)	88, 93, 96, 186
FokI	GGATG	3 cut(s)	185, 295, 338
Fsp4HI	GCNGC	4 cut(s)	88, 93, 96, 186
GlaI	GCGC	2 cut(s)	91, 279
GluI	GCNGC	4 cut(s)	88, 93, 96, 186
HapII	CCGG	4 cut(s)	189, 323, 337, 373
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	2 cut(s)	92, 280
Hin6I	GCGC	2 cut(s)	90, 278
HinP1I	GCGC	2 cut(s)	90, 278
HinfI	GANTC	2 cut(s)	120, 143
HpaII	CCGG	4 cut(s)	189, 323, 337, 373
HphI	GGTGA	2 cut(s)	125, 212
Hpy188I	TCNGA	4 cut(s)	8, 125, 154, 519
Hpy188III	TCNNGA	5 cut(s)	134, 170, 302, 423, 561
Hpy99I	CGWCG	2 cut(s)	185, 278
HpyAV	CCTTC	4 cut(s)	42, 65, 78, 197
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	4 cut(s)	346, 468, 474, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	1 cut(s)	210
HspAI	GCGC	2 cut(s)	90, 278
Kzo9I	GATC	2 cut(s)	352, 419
LmnI	GCTCC	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	113, 254
MalI	GATC	2 cut(s)	354, 421
MboI	GATC	2 cut(s)	352, 419
MboII	GAAGA	5 cut(s)	56, 232, 278, 517, 551
MflI	RGATCY	1 cut(s)	419
MluCI	AATT	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	476
MslI	CAYNNNNRTG	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	4 cut(s)	189, 323, 337, 373
MspR9I	CCNGG	1 cut(s)	374
MvnI	CGCG	2 cut(s)	90, 278
MwoI	GCNNNNNNNGC	1 cut(s)	480
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	2 cut(s)	352, 419
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	120, 143
PkrI	GCNGC	4 cut(s)	89, 94, 97, 187
PsuI	RGATCY	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	530
SatI	GCNGC	4 cut(s)	88, 93, 96, 186
Sau3AI	GATC	2 cut(s)	352, 419
ScrFI	CCNGG	1 cut(s)	374
SetI	ASST	9 cut(s)	46, 133, 152, 167, 208, 230, 344, 437, 462
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	5 cut(s)	88, 93, 96, 140, 186
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	3 cut(s)	109, 415, 484
TaaI	ACNGT	1 cut(s)	430
TaqI	TCGA	3 cut(s)	133, 239, 363
TasI	AATT	1 cut(s)	19
TauI	GCSGC	4 cut(s)	90, 95, 98, 188
TfiI	GAWTC	2 cut(s)	120, 143
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	402
TspGWI	ACGGA	4 cut(s)	71, 132, 169, 536
XhoI	CTCGAG	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.