Rh6CG081000

EF-hand domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014154
Physical Location & Seq
Forward (+)
8790019 .. 8792897
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG081000.1

Sequence Viewer

Length: 576 bp
ATGTTGGCTACTAACCCTAGCCTCTTCTTCCCCTCCATTGCCCTCCGCTGCCGCGCCGCCGCCGGCGACCCTCCTCGAGGCGCCGCATTCCCTCGCCTGGTCCAGTTTCCCTTCGCCGCCTCCGACGTCGCCTCCGTCAGCGGCCGAATCGGCCTTGACACCGAACCCGACGGCGGCGGCGCGGCTCGGCTTCGCGGCGGAAGCTCCGGCGGTGCTATTAAGGTGACGGCGAAGGAGCCGAAGTGGTCGAGGGATAGAGAGAGTTACTTGGTCGACGATGGAGACGCGCTGCCTCTCCCCATGACTTATCCAGATACGGCTCCGGTGACGCCGGAGGTGATTGACCAGAGGCTCCGGTGCGACCCTGTAGTCGAGGATTGCAAGATAGTAGTGTATGAATGGACAGGAAAGTGTAGGAGTTGCCAGGGCTCAGGATACGCTAGTTATTATAATAAAAGAGGGAAGGAAAATGTCTGCAAATGCATACCTTGCCAAGGAATCGGATATGTACAAAAGATAACAACTCGCACCAACATTGATGTAATGGAAGATTTGGATAACGGAAAACCACCATGA

Protein Analysis

191

Amino Acids

20.58

Weight (kDa)

7.46

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19220
fragaria_vesca FvH4_2g06130 FvH4_2g06130
malus_domestica MD10G1094200.v1.1
prunus_persica Prupe.8G124000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0257061
rosa_laevigata RLG00000014674
rosa_multiflora Rmu_sc0000659.1_g000009 Rmu_sc0038017.1_g000001 Rmu_sc0038018.1_g000001
rosa_roxburghii Rroxscaffold_7G00208470
rosa_rugosa Rorug05G0575500
rosa_samantha Rh6AG093500 Rh6BG084300 Rh6CG081000 Rh6DG076400
rosa_wichuraiana Rw6G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AasI GACNNNNNNGTC 1 cut(s) 368
AatII GACGTC 1 cut(s) 129
AbsI CCTCGAGG 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 273
AccII CGCG 4 cut(s) 54, 182, 195, 287
AcoI YGGCCR 1 cut(s) 142
AcyI GRCGYC 3 cut(s) 81, 126, 329
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 4 cut(s) 77, 97, 173, 494
AjnI CCWGG 2 cut(s) 96, 423
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 2 cut(s) 142, 151
ApeKI GCWGC 2 cut(s) 48, 289
AspLEI GCGC 4 cut(s) 56, 83, 182, 289
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 3 cut(s) 235, 337, 349
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 100
BaeI ACNNNNGTAYC 2 cut(s) 427, 460
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 431
BbvI GCAGC 2 cut(s) 35, 276
BccI CCATC 1 cut(s) 272
BceAI ACGGC 3 cut(s) 187, 243, 333
BciT130I CCWGG 2 cut(s) 98, 425
BciVI GTATCC 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 2 cut(s) 18, 441
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 1 cut(s) 428
BglI GCCNNNNNGGC 1 cut(s) 150
Bme1390I CCNGG 2 cut(s) 98, 425
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 4 cut(s) 82, 237, 321, 353
BmrFI CCNGG 2 cut(s) 98, 425
Bpu10I CCTNAGC 1 cut(s) 430
BsaHI GRCGYC 3 cut(s) 81, 126, 329
BsaJI CCNNGG 2 cut(s) 424, 493
BsaWI WCCGGW 2 cut(s) 322, 354
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 227, 257
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 97, 173, 494
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 98, 425
BseDI CCNNGG 2 cut(s) 424, 493
BseLI CCNNNNNNNGG 4 cut(s) 77, 97, 173, 494
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 63
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 35, 276
Bsh1236I CGCG 4 cut(s) 54, 182, 195, 287
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 2 cut(s) 144, 153
BshNI GGYRCC 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 5 cut(s) 63, 207, 323, 332, 355
BslI CCNNNNNNNGG 4 cut(s) 77, 97, 173, 494
BsmAI GTCTC 1 cut(s) 276
BsmBI CGTCTC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 2 cut(s) 144, 153
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 431
Bsp1407I TGTACA 1 cut(s) 508
BspANI GGCC 2 cut(s) 144, 153
BspCNI CTCAG 1 cut(s) 443
BspFNI CGCG 4 cut(s) 54, 182, 195, 287
BspLI GGNNCC 4 cut(s) 82, 237, 321, 353
BspT107I GGYRCC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 424, 493
BssNI GRCGYC 3 cut(s) 81, 126, 329
BssT1I CCWWGG 1 cut(s) 493
Bst2UI CCWGG 2 cut(s) 98, 425
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 3 cut(s) 81, 126, 329
BstAPI GCANNNNNTGC 1 cut(s) 489
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 430
BstENI CCTNNNNNAGG 2 cut(s) 75, 492
BstFNI CGCG 4 cut(s) 54, 182, 195, 287
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 4 cut(s) 56, 83, 182, 289
BstMAI GTCTC 1 cut(s) 276
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 3 cut(s) 150, 201, 489
BstNI CCWGG 2 cut(s) 98, 425
BstSCI CCNGG 2 cut(s) 96, 423
BstSFI CTRYAG 1 cut(s) 366
BstUI CGCG 4 cut(s) 54, 182, 195, 287
BstV1I GCAGC 2 cut(s) 35, 276
BstZI CGGCCG 1 cut(s) 142
BsuI GTATCC 1 cut(s) 428
BsuRI GGCC 2 cut(s) 144, 153
Cac8I GCNNGC 1 cut(s) 64
CfoI GCGC 4 cut(s) 56, 83, 182, 289
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 2 cut(s) 293, 337
Csp6I GTAC 1 cut(s) 509
CviAII CATG 2 cut(s) 301, 573
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 1 cut(s) 430
DinI GGCGCC 1 cut(s) 82
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 213
EclXI CGGCCG 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 100
Eco52I CGGCCG 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 75
EcoNI CCTNNNNNAGG 2 cut(s) 75, 492
EcoRII CCWGG 2 cut(s) 96, 423
EcoT14I CCWWGG 1 cut(s) 493
EcoT22I ATGCAT 1 cut(s) 485
EcoT38I GRGCYC 1 cut(s) 431
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 493
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 2 cut(s) 304, 576
FaiI YATR 6 cut(s) 302, 396, 450, 485, 507, 574
FatI CATG 2 cut(s) 300, 572
FblI GTMKAC 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 431
FspBI CTAG 2 cut(s) 18, 441
GlaI GCGC 4 cut(s) 55, 82, 181, 288
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 2 cut(s) 144, 153
HapII CCGG 5 cut(s) 63, 207, 323, 332, 355
HgaI GACGC 2 cut(s) 293, 337
HhaI GCGC 4 cut(s) 56, 83, 182, 289
Hin1I GRCGYC 3 cut(s) 81, 126, 329
Hin1II CATG 2 cut(s) 304, 576
Hin6I GCGC 4 cut(s) 54, 81, 180, 287
HinP1I GCGC 4 cut(s) 54, 81, 180, 287
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 2 cut(s) 147, 498
HpaII CCGG 5 cut(s) 63, 207, 323, 332, 355
HphI GGTGA 3 cut(s) 235, 337, 349
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 124, 503
Hpy188III TCNNGA 2 cut(s) 311, 432
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 4 cut(s) 128, 131, 173, 278
HpyAV CCTTC 3 cut(s) 121, 226, 457
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 381, 477, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 201, 489
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 3 cut(s) 81, 126, 329
Hsp92II CATG 2 cut(s) 304, 576
HspAI GCGC 4 cut(s) 54, 81, 180, 287
KasI GGCGCC 1 cut(s) 80
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
LmnI GCTCC 4 cut(s) 209, 235, 325, 357
Lsp1109I GCAGC 2 cut(s) 35, 276
MaeI CTAG 2 cut(s) 18, 441
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 223, 263, 325
MboII GAAGA 3 cut(s) 16, 19, 560
MhlI GDGCHC 1 cut(s) 431
Mly113I GGCGCC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 147
Mph1103I ATGCAT 1 cut(s) 485
MreI CGCCGGCG 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 62
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 2 cut(s) 48, 141
MspI CCGG 5 cut(s) 63, 207, 323, 332, 355
MspR9I CCNGG 2 cut(s) 98, 425
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 2 cut(s) 98, 425
MvnI CGCG 4 cut(s) 54, 182, 195, 287
MwoI GCNNNNNNNGC 3 cut(s) 150, 201, 489
NaeI GCCGGC 1 cut(s) 64
NarI GGCGCC 1 cut(s) 81
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 2 cut(s) 304, 576
NlaIV GGNNCC 4 cut(s) 82, 237, 321, 353
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 223, 325
NsiI ATGCAT 1 cut(s) 485
PaeR7I CTCGAG 1 cut(s) 75
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 132
PctI GAATGC 1 cut(s) 86
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 147, 498
PluTI GGCGCC 1 cut(s) 84
PsiI TTATAA 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 96, 423
PspGI CCWGG 2 cut(s) 96, 423
PspN4I GGNNCC 4 cut(s) 82, 237, 321, 353
PspPI GGNCC 1 cut(s) 100
PspXI VCTCGAGB 1 cut(s) 75
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 98, 425
SduI GDGCHC 1 cut(s) 431
SetI ASST 5 cut(s) 129, 206, 225, 339, 490
SfcI CTRYAG 1 cut(s) 366
SfiI GGCCNNNNNGGCC 1 cut(s) 150
SfoI GGCGCC 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 75
SgrAI CRCCGGYG 1 cut(s) 62
SinI GGWCC 1 cut(s) 100
SlaI CTCGAG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 18, 441
StyD4I CCNGG 2 cut(s) 96, 423
StyI CCWWGG 1 cut(s) 493
TaiI ACGT 1 cut(s) 129
TaqI TCGA 4 cut(s) 76, 248, 273, 372
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 2 cut(s) 147, 498
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 2 cut(s) 223, 325
TseI GCWGC 2 cut(s) 48, 289
Tsp45I GTSAC 2 cut(s) 223, 325
TspDTI ATGAA 1 cut(s) 411
TspGWI ACGGA 2 cut(s) 124, 576
VpaK11BI GGWCC 1 cut(s) 100
XagI CCTNNNNNAGG 2 cut(s) 75, 492
XhoI CTCGAG 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 2 cut(s) 18, 441
ZraI GACGTC 1 cut(s) 127
Zsp2I ATGCAT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.