Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014154

Physical Location & Seq

Genomic Coordinates Reverse (-)

14669341 .. 14672969

Gene Structure 3629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1094200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTGGCTACAAACCCTAGCCTCTTCTTCCCCACCAAACCCTCACCCTTCCGCTGCCGCGCTGCCACCGGCGACCTCCCTCGGGGCCCCACATTCCCCCGCCTAATCCAATTCCCCTCCGCCGCTGCCGACGCGTCTTCTGTCGGCGTCCGAATTGGCCAAGATTCTGACCTCGAGGGCGGTAGCAGCGGGAGTTCTGGTGTTAAGGTGAACGCCAAGGAGAGGAAATGGTCGCGCGATAGAGAGAGCTATTTGTTCGACAACGGCGACGCCCTCCCTCTCCCGATGACTTATCCCAATTCGTCGCCTGTCTCGGCGGAGGAGATTGACCGCAGGCTCCGATGCGATCCTGTAGTTGAGGATTGCAAGGAAGTTGTGTATGAATGGACAGGAAAGTGCAATAGTTGCCAAGGCTCAGGATTTGTAAGTTATTTCAACAAAAGAGGAAAGGAGACAGTCTGCAAATGCATACCCTGCCAAGGAATCGGATACGTACAGAAGATAACAGCTCGCAAGGACATTGAAGTGATGGTGGATTTGGATAATGGAAAACCGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0016853 GO:0016860 GO:0016864 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071840 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.33

Weight (kDa)

8.09

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19220
fragaria_vesca	FvH4_2g06130 FvH4_2g06130
malus_domestica	MD10G1094200.v1.1
prunus_persica	Prupe.8G124000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257061
rosa_laevigata	RLG00000014674
rosa_multiflora	Rmu_sc0000659.1_g000009 Rmu_sc0038017.1_g000001 Rmu_sc0038018.1_g000001
rosa_roxburghii	Rroxscaffold_7G00208470
rosa_rugosa	Rorug05G0575500
rosa_samantha	Rh6AG093500 Rh6BG084300 Rh6CG081000 Rh6DG076400
rosa_wichuraiana	Rw6G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	173
AccII	CGCG	4 cut(s)	60, 134, 235, 237
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	157
AcyI	GRCGYC	2 cut(s)	147, 270
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	3 cut(s)	82, 222, 479
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	436, 524
AluBI	AGCT	2 cut(s)	249, 509
AluI	AGCT	2 cut(s)	249, 509
Alw26I	GTCTC	2 cut(s)	316, 446
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	2 cut(s)	81, 173
AoxI	GGCC	2 cut(s)	85, 157
ApaI	GGGCCC	1 cut(s)	89
ApeKI	GCWGC	4 cut(s)	54, 62, 125, 186
AspLEI	GCGC	2 cut(s)	62, 237
AspS9I	GGNCC	2 cut(s)	85, 86
AsuHPI	GGTGA	2 cut(s)	36, 220
AvaI	CYCGRG	2 cut(s)	81, 173
BaeGI	GKGCMC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	41, 49, 112, 198
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	482
BcoDI	GTCTC	2 cut(s)	316, 446
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	482
BisI	GCNGC	6 cut(s)	55, 58, 63, 123, 126, 187
BlsI	GCNGC	6 cut(s)	56, 59, 64, 124, 127, 188
BmeT110I	CYCGRG	2 cut(s)	81, 173
BmgT120I	GGNCC	2 cut(s)	85, 86
BmiI	GGNNCC	4 cut(s)	86, 87, 88, 338
BmsI	GCATC	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	415
BsaAI	YACGTR	1 cut(s)	493
BsaHI	GRCGYC	2 cut(s)	147, 270
BsaJI	CCNNGG	4 cut(s)	80, 216, 409, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 222, 479
Bse118I	RCCGGY	1 cut(s)	68
BseDI	CCNNGG	4 cut(s)	80, 216, 409, 478
BseLI	CCNNNNNNNGG	3 cut(s)	82, 222, 479
BseMII	CTCAG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	4 cut(s)	41, 49, 112, 198
Bsh1236I	CGCG	4 cut(s)	60, 134, 235, 237
BshFI	GGCC	2 cut(s)	87, 159
BsiHKCI	CYCGRG	2 cut(s)	81, 173
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	3 cut(s)	82, 222, 479
BsmAI	GTCTC	2 cut(s)	316, 446
BsnI	GGCC	2 cut(s)	87, 159
BsoBI	CYCGRG	2 cut(s)	81, 173
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	346
BspANI	GGCC	2 cut(s)	87, 159
BspCNI	CTCAG	1 cut(s)	428
BspFNI	CGCG	4 cut(s)	60, 134, 235, 237
BspLI	GGNNCC	4 cut(s)	86, 87, 88, 338
BspPI	GGATC	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	4 cut(s)	80, 216, 409, 478
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	2 cut(s)	147, 270
BssT1I	CCWWGG	3 cut(s)	216, 409, 478
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	2 cut(s)	147, 270
BstAPI	GCANNNNNTGC	2 cut(s)	405, 474
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	335, 511
BstDEI	CTNAG	1 cut(s)	415
BstFNI	CGCG	4 cut(s)	60, 134, 235, 237
BstHHI	GCGC	2 cut(s)	62, 237
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	2 cut(s)	316, 446
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 186, 405, 474
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	89
BstSNI	TACGTA	1 cut(s)	493
BstUI	CGCG	4 cut(s)	60, 134, 235, 237
BstV1I	GCAGC	4 cut(s)	41, 49, 112, 198
BstV2I	GAAGAC	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	87, 159
Cac8I	GCNNGC	2 cut(s)	335, 511
CfoI	GCGC	2 cut(s)	62, 237
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	85, 86
CseI	GACGC	4 cut(s)	123, 136, 140, 278
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	1 cut(s)	558
CviJI	RGCY	8 cut(s)	8, 21, 87, 159, 249, 337, 414, 509
CviKI_1	RGCY	8 cut(s)	8, 21, 87, 159, 249, 337, 414, 509
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	2 cut(s)	109, 332
Eco105I	TACGTA	1 cut(s)	493
Eco130I	CCWWGG	3 cut(s)	216, 409, 478
Eco24I	GRGCYC	1 cut(s)	89
Eco88I	CYCGRG	2 cut(s)	81, 173
EcoO109I	RGGNCCY	2 cut(s)	85, 86
EcoT14I	CCWWGG	3 cut(s)	216, 409, 478
EcoT22I	ATGCAT	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	3 cut(s)	216, 409, 478
FaeI	CATG	1 cut(s)	561
FaiI	YATR	3 cut(s)	381, 470, 559
FatI	CATG	1 cut(s)	557
FauI	CCCGC	2 cut(s)	107, 182
Fnu4HI	GCNGC	6 cut(s)	55, 58, 63, 123, 126, 187
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	6 cut(s)	55, 58, 63, 123, 126, 187
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	2 cut(s)	61, 236
GluI	GCNGC	6 cut(s)	55, 58, 63, 123, 126, 187
HaeIII	GGCC	2 cut(s)	87, 159
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	4 cut(s)	123, 136, 140, 278
HhaI	GCGC	2 cut(s)	62, 237
Hin1I	GRCGYC	2 cut(s)	147, 270
Hin1II	CATG	1 cut(s)	561
Hin6I	GCGC	2 cut(s)	60, 235
HinP1I	GCGC	2 cut(s)	60, 235
HinfI	GANTC	2 cut(s)	164, 483
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	36, 220
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	4 cut(s)	152, 169, 341, 488
Hpy188III	TCNNGA	2 cut(s)	283, 417
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	3 cut(s)	134, 272, 307
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	4 cut(s)	366, 399, 462, 468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 186, 405, 474
HpyF3I	CTNAG	1 cut(s)	415
HpySE526I	ACGT	1 cut(s)	492
Hsp92I	GRCGYC	2 cut(s)	147, 270
Hsp92II	CATG	1 cut(s)	561
HspAI	GCGC	2 cut(s)	60, 235
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	342
LpnPI	CCDG	8 cut(s)	82, 183, 319, 321, 363, 375, 402, 487
Lsp1109I	GCAGC	4 cut(s)	41, 49, 112, 198
LweI	GCATC	1 cut(s)	332
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	492
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	4 cut(s)	16, 19, 129, 511
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	3 cut(s)	110, 153, 298
MluI	ACGCGT	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	159
Mox20I	TGGCCA	1 cut(s)	159
Mph1103I	ATGCAT	1 cut(s)	470
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	524
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	3 cut(s)	54, 125, 189
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	4 cut(s)	60, 134, 235, 237
MwoI	GCNNNNNNNGC	4 cut(s)	131, 186, 405, 474
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	561
NlaIV	GGNNCC	4 cut(s)	86, 87, 88, 338
NmeAIII	GCCGAG	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	164, 483
PkrI	GCNGC	6 cut(s)	56, 59, 64, 124, 127, 188
Ppu21I	YACGTR	1 cut(s)	493
PspN4I	GGNNCC	4 cut(s)	86, 87, 88, 338
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	85, 86
PspXI	VCTCGAGB	1 cut(s)	173
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	6 cut(s)	55, 58, 63, 123, 126, 187
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	85, 86
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	6 cut(s)	78, 174, 210, 251, 495, 511
SfaNI	GCATC	1 cut(s)	332
SfcI	CTRYAG	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	173
SgrAI	CRCCGGYG	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SnaBI	TACGTA	1 cut(s)	493
Sse9I	AATT	3 cut(s)	110, 153, 298
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	3 cut(s)	216, 409, 478
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	174, 258
TasI	AATT	3 cut(s)	110, 153, 298
TauI	GCSGC	2 cut(s)	60, 125
TfiI	GAWTC	2 cut(s)	164, 483
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	4 cut(s)	54, 62, 125, 186
TspDTI	ATGAA	1 cut(s)	396
XhoI	CTCGAG	1 cut(s)	173
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.