Rh6AG093500

Protein disulfide-isomerase SCO2-like isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
13864338 .. 13880812
16475 bp
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UTR
Exon/CDS
Intron
Rh6AG093500.1

Sequence Viewer

Length: 507 bp
ATGCTCATCCCGACCCGACCCTCAAAAAGGACTTTCGAAGAAGAATTGAAGATGTTCAAGGTAGTGCTGAACGATCGTCTTGGGAAGAAGGTAAAGCTGAAGGACAACGAGAACGACATCATCAACTTCCTGGAAGCTAGAGCTCCTCTTCTGATTTCTTCTCCTTCTCAAAATTCCGGTGTGGTTGCGGCAAGCGGGGATGTCGACGGCGTGGTGGACAATGTTGTGGATGGTACTGGAGGTGGTGGGGACGACGGCGGCTTTGACTACAATTGGGATTGCAAGATAGTAGTGTATGAATGGACAGGAAAGTGTAGGAGTTGCCAGGGCTCAGGATACGCTAGTTATTATAATAAAAGAGGGAAGGAAAATGTCTGCAAATGCATACCTTGCCAAGGAATCGAGTTCTCTCACAAGATGTTCATCATTGCAGGATATGTACAAAAGATAACAACTCGCACCAACATTGATGTAATGGAAGATTTGGATAACGGAAAACCACCATGA

Protein Analysis

168

Amino Acids

18.55

Weight (kDa)

5.89

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014154)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccI GTMKAC 1 cut(s) 204
AciI CCGC 3 cut(s) 188, 195, 258
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 2 cut(s) 235, 441
AfiI CCNNNNNNNGG 2 cut(s) 27, 395
AgsI TTSAA 2 cut(s) 49, 58
AjnI CCWGG 2 cut(s) 129, 324
AluBI AGCT 3 cut(s) 97, 137, 143
AluI AGCT 3 cut(s) 97, 137, 143
Alw21I GWGCWC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
Asp700I GAANNNNTTC 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 36
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BanII GRGCYC 2 cut(s) 145, 332
Bbv12I GWGCWC 1 cut(s) 145
BccI CCATC 1 cut(s) 224
BceAI ACGGC 2 cut(s) 223, 271
BciT130I CCWGG 2 cut(s) 131, 326
BciVI GTATCC 1 cut(s) 329
BfaI CTAG 2 cut(s) 138, 342
BfuI GTATCC 1 cut(s) 329
BisI GCNGC 2 cut(s) 189, 259
BlsI GCNGC 2 cut(s) 190, 260
Bme1390I CCNGG 2 cut(s) 131, 326
BmrFI CCNGG 2 cut(s) 131, 326
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 331
Bpu14I TTCGAA 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 325, 394
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 395
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 2 cut(s) 131, 326
BseDI CCNNGG 2 cut(s) 325, 394
BseGI GGATG 3 cut(s) 6, 205, 235
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 27, 395
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 27, 395
BsmFI GGGAC 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 145, 332
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 3 cut(s) 188, 195, 258
BspCNI CTCAG 1 cut(s) 344
BspT104I TTCGAA 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 325, 394
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 2 cut(s) 131, 326
Bst6I CTCTTC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 439
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 331
BstENI CCTNNNNNAGG 2 cut(s) 25, 393
BstF5I GGATG 3 cut(s) 6, 205, 235
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstNI CCWGG 2 cut(s) 131, 326
BstSCI CCNGG 2 cut(s) 129, 324
BsuI GTATCC 1 cut(s) 329
BtsCI GGATG 3 cut(s) 6, 205, 235
Cac8I GCNNGC 1 cut(s) 193
Csp6I GTAC 2 cut(s) 234, 440
CviAII CATG 1 cut(s) 504
CviJI RGCY 5 cut(s) 97, 137, 143, 261, 330
CviKI_1 RGCY 5 cut(s) 97, 137, 143, 261, 330
CviQI GTAC 2 cut(s) 234, 440
DdeI CTNAG 1 cut(s) 331
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 394
Eco24I GRGCYC 2 cut(s) 145, 332
Eco53kI GAGCTC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 143
EcoNI CCTNNNNNAGG 2 cut(s) 25, 393
EcoRII CCWGG 2 cut(s) 129, 324
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 386
EcoT38I GRGCYC 2 cut(s) 145, 332
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 1 cut(s) 507
FaiI YATR 5 cut(s) 297, 351, 386, 438, 505
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 503
FauI CCCGC 1 cut(s) 188
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 189, 259
FokI GGATG 2 cut(s) 212, 242
FriOI GRGCYC 2 cut(s) 145, 332
Fsp4HI GCNGC 2 cut(s) 189, 259
FspBI CTAG 2 cut(s) 138, 342
GluI GCNGC 2 cut(s) 189, 259
GsuI CTGGAG 1 cut(s) 258
HapII CCGG 1 cut(s) 177
Hin1II CATG 1 cut(s) 507
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 1 cut(s) 399
HpaII CCGG 1 cut(s) 177
Hpy166II GTNNAC 2 cut(s) 205, 217
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 2 cut(s) 10, 333
Hpy8I GTNNAC 2 cut(s) 205, 217
Hpy99I CGWCG 2 cut(s) 209, 257
HpyAV CCTTC 4 cut(s) 82, 94, 174, 358
HpyCH4V TGCA 4 cut(s) 282, 378, 384, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpyF3I CTNAG 1 cut(s) 331
Hsp92II CATG 1 cut(s) 507
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 9 cut(s) 116, 143, 190, 222, 291, 311, 318, 338, 417
MaeI CTAG 2 cut(s) 138, 342
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 7 cut(s) 50, 53, 61, 97, 140, 150, 491
MfeI CAATTG 1 cut(s) 271
MhlI GDGCHC 2 cut(s) 145, 332
MluCI AATT 3 cut(s) 44, 172, 271
MnlI CCTC 4 cut(s) 31, 156, 233, 353
Mph1103I ATGCAT 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 53
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 131, 326
MunI CAATTG 1 cut(s) 271
MvaI CCWGG 2 cut(s) 131, 326
MwoI GCNNNNNNNGC 1 cut(s) 390
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 507
NsiI ATGCAT 1 cut(s) 386
NspV TTCGAA 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 399
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 190, 260
Ple19I CGATCG 1 cut(s) 76
PsiI TTATAA 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 129, 324
PspGI CCWGG 2 cut(s) 129, 324
PvuI CGATCG 1 cut(s) 76
RsaI GTAC 2 cut(s) 235, 441
RsaNI GTAC 2 cut(s) 234, 440
SacI GAGCTC 1 cut(s) 145
SalI GTCGAC 1 cut(s) 203
SatI GCNGC 2 cut(s) 189, 259
Sau3AI GATC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 131, 326
SduI GDGCHC 2 cut(s) 145, 332
SetI ASST 7 cut(s) 63, 93, 99, 139, 145, 244, 391
SfuI TTCGAA 1 cut(s) 36
Sse9I AATT 3 cut(s) 44, 172, 271
SsiI CCGC 3 cut(s) 188, 195, 258
SspMI CTAG 2 cut(s) 138, 342
SstI GAGCTC 1 cut(s) 145
StyD4I CCNGG 2 cut(s) 129, 324
StyI CCWWGG 1 cut(s) 394
TaqI TCGA 3 cut(s) 36, 204, 402
TasI AATT 3 cut(s) 44, 172, 271
TatI WGTACW 1 cut(s) 439
TauI GCSGC 2 cut(s) 191, 261
TfiI GAWTC 1 cut(s) 399
TspDTI ATGAA 2 cut(s) 312, 412
TspGWI ACGGA 1 cut(s) 507
XagI CCTNNNNNAGG 2 cut(s) 25, 393
XapI RAATTY 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 2 cut(s) 138, 342
Zsp2I ATGCAT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.