AT3G19400

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011728
Physical Location & Seq
Forward (+)
6725383 .. 6727105
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19400.2

Sequence Viewer

Length: 1089 bp
ATGGCGGCTACTCCAATCAGAGTTATAGTCTCAGCTCTTGTGATCCTCTCGGTATTACTACTTTCCTCGTCTCTGGGAGTCGCCACAGAGACAGAAATTGAGCGGAACGAGACAGAGGTGCGGCTGATGTACGAGCAATGGCTTGTGGAGAATCGAAAGAACTATAATGGTCTTGGAGAGAAAGAGAGACGATTCAAGATCTTCAAAGACAACTTGAAGTTTGTCGATGAACACAATTCTGTTCCGGATCGGACTTTTGAAGTAGGGTTGACCAGGTTCGCTGATCTAACAAATGAAGAGTTTAGAGCGATTTATTTAAGGAAGAAGATGGAAAGAACTAAAGATTCGGTGAAAACTGAGAGATATTTGTACAAAGAAGGAGATGTTTTGCCTGATGAAGTAGATTGGAGAGCGAATGGCGCAGTTGTTTCAGTCAAAGATCAAGGAAACTGTGGAAGTTGTTGGGCGTTTTCTGCGGTTGGAGCAGTGGAAGGGATCAACCAGATCACTACCGGAGAGTTGATATCTTTGTCGGAGCAAGAACTCGTTGACTGTGACAGAGGTTTTGTCAACGCTGGATGTGATGGAGGTATCATGAACTATGCTTTTGAGTTCATTATGAAAAATGGTGGTATTGAGACAGATCAAGATTACCCTTATAACGCCAACGATCTTGGCTTGTGCAATGCAGATAAGAATAACAATACTCGTGTTGTTACAATTGATGGTTATGAAGATGTTCCTAGAGACGATGAGAAGTCTTTGAAAAAGGCTGTTGCTCATCAACCTGTTAGTGTTGCTATTGAAGCTAGTAGCCAAGCTTTCCAGCTTTACAAATCCGGTGTGATGACAGGAACATGTGGAATATCTTTGGACCATGGTGTAGTAGTGGTTGGATATGGATCCACAAGTGGTGAAGATTATTGGATCATTCGCAATTCATGGGGGTTGAATTGGGGAGATAGCGGTTACGTTAAGCTCCAACGTAACATCGATGATCCATTTGGGAAATGTGGTATAGCAATGATGCCTTCTTACCCGACCAAATCATCATTCCCATCGTCATTTGATTTGTTGTCTGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004842 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009888 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010494 GO:0010498 GO:0010605 GO:0016020 GO:0016049 GO:0016567 GO:0016740 GO:0016787 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030163 GO:0031146 GO:0031224 GO:0031225 GO:0031347 GO:0031348 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0035770 GO:0036211 GO:0036464 GO:0040007 GO:0042176 GO:0042177 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0060255 GO:0060560 GO:0065007 GO:0070011 GO:0070647 GO:0071695 GO:0071704 GO:0080090 GO:0080134 GO:0080147 GO:0090558 GO:0090627 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

362

Amino Acids

40.29

Weight (kDa)

4.77

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 44 - 101 4e-18 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 130 - 282 7.6e-56 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19400 AT3G19400
fragaria_vesca FvH4_1g16530
malus_domestica MD02G1177700.v1.1 MD15G1287500.v1.1
prunus_persica Prupe.6G230400_v2.0.a1 Prupe.6G230400_v2.0.a1
pyrus_communis pycom02g14370 pycom15g25110
rosa_chinensis RchiOBHm_Chr2g0106431
rosa_laevigata RLG00000017497
rosa_multiflora Rmu_sc0004015.1_g000003
rosa_roxburghii Rroxscaffold_2G00137190
rosa_rugosa Rorug02G0135300
rosa_samantha Rh2AG186600 Rh2BG196900 Rh2CG191600 Rh2DG192700
rosa_wichuraiana Rw2G014540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AccBSI CCGCTC 1 cut(s) 103
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 5 cut(s) 5, 103, 121, 476, 966
AclWI GGATC 7 cut(s) 37, 255, 503, 897, 910, 935, 992
AfaI GTAC 2 cut(s) 131, 371
AflIII ACRYGT 1 cut(s) 857
AgsI TTSAA 7 cut(s) 196, 205, 217, 260, 766, 806, 952
AjnI CCWGG 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 1037, 1069
AluBI AGCT 5 cut(s) 35, 809, 821, 829, 979
AluI AGCT 5 cut(s) 35, 809, 821, 829, 979
Alw26I GTCTC 7 cut(s) 34, 75, 83, 104, 181, 632, 741
AlwI GGATC 7 cut(s) 37, 255, 503, 897, 910, 935, 992
Aor13HI TCCGGA 1 cut(s) 244
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 874
AsuHPI GGTGA 2 cut(s) 361, 926
AvaII GGWCC 1 cut(s) 874
BamHI GGATCC 1 cut(s) 902
BauI CACGAG 1 cut(s) 708
BccI CCATC 4 cut(s) 322, 578, 719, 1066
BciT130I CCWGG 1 cut(s) 274
BcoDI GTCTC 7 cut(s) 34, 75, 83, 104, 181, 632, 741
BfaI CTAG 2 cut(s) 744, 810
BglII AGATCT 1 cut(s) 198
BisI GCNGC 2 cut(s) 6, 122
BlsI GCNGC 2 cut(s) 7, 123
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 874
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 1 cut(s) 904
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 1017
Bsa29I ATCGAT 1 cut(s) 993
BsaBI GATNNNNATC 1 cut(s) 901
BsaJI CCNNGG 1 cut(s) 877
BsaWI WCCGGW 3 cut(s) 244, 512, 839
Bse3DI GCAATG 3 cut(s) 143, 691, 1029
Bse8I GATNNNNATC 1 cut(s) 901
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 274
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 1 cut(s) 877
BseGI GGATG 1 cut(s) 584
BseJI GATNNNNATC 1 cut(s) 901
BseMI GCAATG 3 cut(s) 143, 691, 1029
BseMII CTCAG 3 cut(s) 45, 348, 1071
BshVI ATCGAT 1 cut(s) 993
BsiSI CCGG 3 cut(s) 245, 513, 840
BsmAI GTCTC 7 cut(s) 34, 75, 83, 104, 181, 632, 741
BsmBI CGTCTC 3 cut(s) 75, 181, 741
Bsp13I TCCGGA 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 369
Bsp19I CCATGG 1 cut(s) 877
BspACI CCGC 5 cut(s) 5, 103, 121, 476, 966
BspCNI CTCAG 3 cut(s) 44, 349, 1072
BspDI ATCGAT 1 cut(s) 993
BspEI TCCGGA 1 cut(s) 244
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 1 cut(s) 904
BspPI GGATC 7 cut(s) 37, 255, 503, 897, 910, 935, 992
BsrBI CCGCTC 1 cut(s) 103
BsrDI GCAATG 3 cut(s) 143, 691, 1029
BsrGI TGTACA 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 877
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 1 cut(s) 877
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 2 cut(s) 452, 554
Bst6I CTCTTC 1 cut(s) 291
BstAUI TGTACA 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 31, 357, 1080
BstDSI CCRYGG 1 cut(s) 877
BstF5I GGATG 1 cut(s) 584
BstHHI GCGC 1 cut(s) 422
BstMAI GTCTC 7 cut(s) 34, 75, 83, 104, 181, 632, 741
BstMWI GCNNNNNNNGC 4 cut(s) 419, 473, 482, 806
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 861
BstSCI CCNGG 1 cut(s) 272
BstX2I RGATCY 2 cut(s) 198, 902
BstYI RGATCY 2 cut(s) 198, 902
Bsu15I ATCGAT 1 cut(s) 993
BsuTUI ATCGAT 1 cut(s) 993
BtgI CCRYGG 1 cut(s) 877
BtsCI GGATG 1 cut(s) 584
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 874
ClaI ATCGAT 1 cut(s) 993
CsiI ACCWGGT 1 cut(s) 272
Csp6I GTAC 2 cut(s) 130, 370
CviAII CATG 4 cut(s) 595, 858, 878, 942
CviQI GTAC 2 cut(s) 130, 370
DdeI CTNAG 3 cut(s) 31, 357, 1080
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 877
Eco32I GATATC 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 874
EcoRII CCWGG 1 cut(s) 272
EcoRV GATATC 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 877
ErhI CCWWGG 1 cut(s) 877
Esp3I CGTCTC 3 cut(s) 75, 181, 741
FaeI CATG 4 cut(s) 598, 861, 881, 945
FatI CATG 4 cut(s) 594, 857, 877, 941
Fnu4HI GCNGC 2 cut(s) 6, 122
FokI GGATG 1 cut(s) 591
Fsp4HI GCNGC 2 cut(s) 6, 122
FspBI CTAG 2 cut(s) 744, 810
GlaI GCGC 1 cut(s) 421
GluI GCNGC 2 cut(s) 6, 122
HapII CCGG 3 cut(s) 245, 513, 840
HhaI GCGC 1 cut(s) 422
Hin1II CATG 4 cut(s) 598, 861, 881, 945
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HincII GTYRAC 3 cut(s) 270, 550, 571
HindII GTYRAC 3 cut(s) 270, 550, 571
HindIII AAGCTT 1 cut(s) 819
HinfI GANTC 4 cut(s) 78, 151, 192, 344
HpaII CCGG 3 cut(s) 245, 513, 840
HphI GGTGA 2 cut(s) 361, 926
Hpy166II GTNNAC 3 cut(s) 270, 550, 571
Hpy188I TCNGA 4 cut(s) 20, 252, 535, 1081
Hpy188III TCNNGA 4 cut(s) 196, 245, 595, 647
Hpy8I GTNNAC 3 cut(s) 270, 550, 571
HpyAV CCTTC 3 cut(s) 371, 485, 1041
HpyCH4III ACNGT 2 cut(s) 452, 554
HpyCH4IV ACGT 2 cut(s) 972, 985
HpyCH4V TGCA 2 cut(s) 684, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 473, 482, 806
HpyF3I CTNAG 3 cut(s) 31, 357, 1080
HpySE526I ACGT 2 cut(s) 972, 985
Hsp92II CATG 4 cut(s) 598, 861, 881, 945
HspAI GCGC 1 cut(s) 420
Kpn2I TCCGGA 1 cut(s) 244
LmnI GCTCC 3 cut(s) 482, 535, 984
LweI GCATC 1 cut(s) 1017
MabI ACCWGGT 1 cut(s) 272
MaeI CTAG 2 cut(s) 744, 810
MaeII ACGT 2 cut(s) 972, 985
MaeIII GTNAC 4 cut(s) 554, 715, 968, 986
MbiI CCGCTC 1 cut(s) 103
MboII GAAGA 6 cut(s) 193, 308, 334, 337, 746, 929
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 2 cut(s) 198, 902
MluCI AATT 5 cut(s) 96, 235, 720, 937, 952
MlyI GAGTC 1 cut(s) 87
MmeI TCCRAC 4 cut(s) 460, 513, 874, 1006
MnlI CCTC 5 cut(s) 56, 76, 109, 554, 581
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 2 cut(s) 317, 975
MspI CCGG 3 cut(s) 245, 513, 840
MspR9I CCNGG 1 cut(s) 274
MunI CAATTG 1 cut(s) 720
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 4 cut(s) 419, 473, 482, 806
NcoI CCATGG 1 cut(s) 877
NlaIII CATG 4 cut(s) 598, 861, 881, 945
NlaIV GGNNCC 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 554
NspI RCATGY 1 cut(s) 861
PagI TCATGA 1 cut(s) 594
PciI ACATGT 1 cut(s) 857
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 3 cut(s) 151, 192, 344
PkrI GCNGC 2 cut(s) 7, 123
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PscI ACATGT 1 cut(s) 857
PsiI TTATAA 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 904
PspPI GGNCC 1 cut(s) 874
PsuI RGATCY 2 cut(s) 198, 902
RsaI GTAC 2 cut(s) 131, 371
RsaNI GTAC 2 cut(s) 130, 370
SaqAI TTAA 2 cut(s) 317, 975
SatI GCNGC 2 cut(s) 6, 122
Sau96I GGNCC 1 cut(s) 874
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 274
SexAI ACCWGGT 1 cut(s) 272
SfaNI GCATC 1 cut(s) 1017
SinI GGWCC 1 cut(s) 874
Sse9I AATT 5 cut(s) 96, 235, 720, 937, 952
SsiI CCGC 5 cut(s) 5, 103, 121, 476, 966
SspMI CTAG 2 cut(s) 744, 810
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 877
TaaI ACNGT 2 cut(s) 452, 554
TaiI ACGT 2 cut(s) 975, 988
TaqI TCGA 3 cut(s) 154, 225, 993
TasI AATT 5 cut(s) 96, 235, 720, 937, 952
TatI WGTACW 1 cut(s) 369
TauI GCSGC 2 cut(s) 8, 124
TfiI GAWTC 3 cut(s) 151, 192, 344
Tru1I TTAA 2 cut(s) 317, 975
Tru9I TTAA 2 cut(s) 317, 975
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 8 cut(s) 243, 309, 411, 604, 611, 635, 747, 930
TspRI CASTG 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 874
XceI RCATGY 1 cut(s) 861
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 2 cut(s) 744, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.