Rh2CG191600

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011728
Physical Location & Seq
Forward (+)
18076950 .. 18077486
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG191600.1

Sequence Viewer

Length: 537 bp
ATGTACACCATCACTGGGGAGAAAAACACCAACAAACCCCAAACCTGTCTCTCAAGACTCACCCACACTTTCTCCTCAACCATGTCAACCACCATGACCCTAACCCTCTTCAGCCTCCTCTTCCTCTCCTTCACCCTCTCCCACGCCTCCAGCCTCCGCACCGAGGCTGAGGTCCGGGAGCTCTACCAGCACTGGCTGGTCAAGCACCAGAAAGTCTACAACGGCATCGGAGAGGAGGAGACCAGGTTCCAGATCTTCAAGGACAACTTGAAGTTTGTTGATGAGCACAACGCTGAGAACAGGTCCTACAAGGTTGGCTTGAATGCCTTTGCCGACTTGACCAACCAGGAGTACCGGGCCAAGTTTCTCGGCACCCGCTCCGACCCCAAGAGGAGGATCATGAAGGCCAAGAAACCTAGCCTCAGGTACGCTGTGCGCCCCGATGACAAGTTGCCGGAATCCGTGGACTGGAGAGCCTTGGGGGCTGTTAATCCGATCAAAAACCAAGGCAGCTGCGGTGAGATATTTTTACTTTAA

Protein Analysis

178

Amino Acids

20.51

Weight (kDa)

9.46

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 62 - 118 7.1e-20 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19400 AT3G19400
fragaria_vesca FvH4_1g16530
malus_domestica MD02G1177700.v1.1 MD15G1287500.v1.1
prunus_persica Prupe.6G230400_v2.0.a1 Prupe.6G230400_v2.0.a1
pyrus_communis pycom02g14370 pycom15g25110
rosa_chinensis RchiOBHm_Chr2g0106431
rosa_laevigata RLG00000017497
rosa_multiflora Rmu_sc0004015.1_g000003
rosa_roxburghii Rroxscaffold_2G00137190
rosa_rugosa Rorug02G0135300
rosa_samantha Rh2AG186600 Rh2BG196900 Rh2CG191600 Rh2DG192700
rosa_wichuraiana Rw2G014540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AccBSI CCGCTC 1 cut(s) 378
AccI GTMKAC 1 cut(s) 216
AciI CCGC 3 cut(s) 157, 376, 516
AclWI GGATC 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 94
AfaI GTAC 3 cut(s) 5, 353, 428
AfiI CCNNNNNNNGG 4 cut(s) 15, 163, 393, 468
AgsI TTSAA 3 cut(s) 259, 271, 322
AjnI CCWGG 2 cut(s) 242, 345
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 2 cut(s) 181, 513
AluI AGCT 2 cut(s) 181, 513
Alw21I GWGCWC 2 cut(s) 183, 288
Alw26I GTCTC 2 cut(s) 53, 233
AlwI GGATC 1 cut(s) 404
AoxI GGCC 2 cut(s) 357, 405
ApeKI GCWGC 2 cut(s) 510, 513
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 3 cut(s) 172, 303, 357
AsuC2I CCSGG 2 cut(s) 176, 356
AsuHPI GGTGA 3 cut(s) 52, 124, 530
AvaII GGWCC 2 cut(s) 172, 303
AxyI CCTNAGG 1 cut(s) 422
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 183, 288
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 500, 522
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 2 cut(s) 244, 347
BcnI CCSGG 2 cut(s) 176, 356
BcoDI GTCTC 2 cut(s) 53, 233
BfaI CTAG 1 cut(s) 417
BglI GCCNNNNNGGC 1 cut(s) 482
BglII AGATCT 1 cut(s) 252
BisI GCNGC 2 cut(s) 511, 514
BlsI GCNGC 2 cut(s) 512, 515
Bme1390I CCNGG 4 cut(s) 176, 244, 347, 356
Bme18I GGWCC 2 cut(s) 172, 303
BmgT120I GGNCC 3 cut(s) 172, 303, 357
BmiI GGNNCC 2 cut(s) 248, 373
BmrFI CCNGG 4 cut(s) 176, 244, 347, 356
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 24
BpmI CTGGAG 2 cut(s) 133, 490
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 2 cut(s) 176, 356
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 162, 462, 477, 505
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 230, 260
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 163, 393, 468
Bse1I ACTGG 3 cut(s) 19, 197, 473
Bse21I CCTNAGG 1 cut(s) 422
BseBI CCWGG 2 cut(s) 244, 347
BseDI CCNNGG 4 cut(s) 162, 462, 477, 505
BseLI CCNNNNNNNGG 4 cut(s) 15, 163, 393, 468
BseMII CTCAG 3 cut(s) 159, 285, 436
BseNI ACTGG 3 cut(s) 19, 197, 473
BseRI GAGGAG 5 cut(s) 64, 107, 248, 251, 406
BseXI GCAGC 2 cut(s) 500, 522
BshFI GGCC 2 cut(s) 359, 407
BshNI GGYRCC 1 cut(s) 371
BsiHKAI GWGCWC 2 cut(s) 183, 288
BsiSI CCGG 3 cut(s) 175, 355, 455
BslI CCNNNNNNNGG 4 cut(s) 15, 163, 393, 468
BsmAI GTCTC 2 cut(s) 53, 233
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 2 cut(s) 359, 407
Bso31I GGTCTC 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 183, 288
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 252, 396, 495
BspACI CCGC 3 cut(s) 157, 376, 516
BspANI GGCC 2 cut(s) 359, 407
BspCNI CTCAG 3 cut(s) 160, 286, 435
BspHI TCATGA 1 cut(s) 399
BspLI GGNNCC 2 cut(s) 248, 373
BspPI GGATC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 19, 197, 473
BssECI CCNNGG 4 cut(s) 162, 462, 477, 505
BssMI GATC 3 cut(s) 252, 396, 495
BssT1I CCWWGG 2 cut(s) 477, 505
Bst2UI CCWGG 2 cut(s) 244, 347
Bst6I CTCTTC 2 cut(s) 113, 125
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 3 cut(s) 168, 294, 422
BstDSI CCRYGG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 3 cut(s) 255, 399, 498
BstMAI GTCTC 2 cut(s) 53, 233
BstMBI GATC 3 cut(s) 252, 396, 495
BstMWI GCNNNNNNNGC 3 cut(s) 187, 202, 482
BstNI CCWGG 2 cut(s) 244, 347
BstSCI CCNGG 4 cut(s) 174, 242, 345, 354
BstV1I GCAGC 2 cut(s) 500, 522
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 422
BsuRI GGCC 2 cut(s) 359, 407
BtgI CCRYGG 1 cut(s) 462
BtsIMutI CAGTG 2 cut(s) 12, 190
CciI TCATGA 1 cut(s) 399
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 3 cut(s) 172, 303, 357
CsiI ACCWGGT 1 cut(s) 242
Csp6I GTAC 3 cut(s) 4, 352, 427
CviAII CATG 3 cut(s) 82, 94, 400
CviQI GTAC 3 cut(s) 4, 352, 427
DdeI CTNAG 3 cut(s) 168, 294, 422
DpnI GATC 3 cut(s) 254, 398, 497
DpnII GATC 3 cut(s) 252, 396, 495
Eam1104I CTCTTC 2 cut(s) 113, 125
EarI CTCTTC 2 cut(s) 113, 125
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 477, 505
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 2 cut(s) 172, 303
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 94
Eco81I CCTNAGG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 303
EcoRII CCWGG 2 cut(s) 242, 345
EcoT14I CCWWGG 2 cut(s) 477, 505
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 2 cut(s) 477, 505
FaeI CATG 3 cut(s) 85, 97, 403
FaiI YATR 3 cut(s) 83, 95, 401
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 302, 334
FatI CATG 3 cut(s) 81, 93, 399
FauI CCCGC 1 cut(s) 383
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 511, 514
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 511, 514
FspBI CTAG 1 cut(s) 417
GlaI GCGC 1 cut(s) 437
GluI GCNGC 2 cut(s) 511, 514
GsuI CTGGAG 2 cut(s) 133, 490
HaeIII GGCC 2 cut(s) 359, 407
HapII CCGG 3 cut(s) 175, 355, 455
HhaI GCGC 1 cut(s) 438
Hin1II CATG 3 cut(s) 85, 97, 403
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 2 cut(s) 57, 458
HpaII CCGG 3 cut(s) 175, 355, 455
HphI GGTGA 3 cut(s) 52, 124, 530
Hpy166II GTNNAC 4 cut(s) 6, 87, 217, 466
Hpy188I TCNGA 3 cut(s) 230, 382, 495
Hpy188III TCNNGA 3 cut(s) 54, 250, 400
Hpy8I GTNNAC 4 cut(s) 6, 87, 217, 466
HpyAV CCTTC 2 cut(s) 139, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 202, 482
HpyF3I CTNAG 3 cut(s) 168, 294, 422
Hsp92II CATG 3 cut(s) 85, 97, 403
HspAI GCGC 1 cut(s) 436
Kzo9I GATC 3 cut(s) 252, 396, 495
LmnI GCTCC 2 cut(s) 178, 383
Lsp1109I GCAGC 2 cut(s) 500, 522
LweI GCATC 1 cut(s) 234
MabI ACCWGGT 1 cut(s) 242
MaeI CTAG 1 cut(s) 417
MalI GATC 3 cut(s) 254, 398, 497
MbiI CCGCTC 1 cut(s) 378
MboI GATC 3 cut(s) 252, 396, 495
MboII GAAGA 3 cut(s) 100, 112, 247
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 2 cut(s) 183, 288
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 405
MseI TTAA 2 cut(s) 489, 535
MspA1I CMGCKG 1 cut(s) 513
MspI CCGG 3 cut(s) 175, 355, 455
MspR9I CCNGG 4 cut(s) 176, 244, 347, 356
Mva1269I GAATGC 1 cut(s) 328
MvaI CCWGG 2 cut(s) 244, 347
MwoI GCNNNNNNNGC 3 cut(s) 187, 202, 482
NciI CCSGG 2 cut(s) 176, 356
NdeII GATC 3 cut(s) 252, 396, 495
NlaIII CATG 3 cut(s) 85, 97, 403
NlaIV GGNNCC 2 cut(s) 248, 373
NmeAIII GCCGAG 1 cut(s) 348
PagI TCATGA 1 cut(s) 399
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 458
PfoI TCCNGGA 1 cut(s) 174
PkrI GCNGC 2 cut(s) 512, 515
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 242, 345
PspGI CCWGG 2 cut(s) 242, 345
PspN4I GGNNCC 2 cut(s) 248, 373
PspPI GGNCC 3 cut(s) 172, 303, 357
PspPPI RGGWCCY 1 cut(s) 303
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
PsuI RGATCY 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 513
RsaI GTAC 3 cut(s) 5, 353, 428
RsaNI GTAC 3 cut(s) 4, 352, 427
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 489, 535
SatI GCNGC 2 cut(s) 511, 514
Sau3AI GATC 3 cut(s) 252, 396, 495
Sau96I GGNCC 3 cut(s) 172, 303, 357
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 4 cut(s) 176, 244, 347, 356
SduI GDGCHC 2 cut(s) 183, 288
SetI ASST 9 cut(s) 47, 174, 183, 248, 305, 315, 418, 428, 515
SexAI ACCWGGT 1 cut(s) 242
SfaNI GCATC 1 cut(s) 234
SinI GGWCC 2 cut(s) 172, 303
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SsiI CCGC 3 cut(s) 157, 376, 516
SspMI CTAG 1 cut(s) 417
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 4 cut(s) 174, 242, 345, 354
StyI CCWWGG 2 cut(s) 477, 505
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 2 cut(s) 489, 535
Tru9I TTAA 2 cut(s) 489, 535
TscAI CASTG 2 cut(s) 19, 197
TseI GCWGC 2 cut(s) 510, 513
TspDTI ATGAA 1 cut(s) 416
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 2 cut(s) 19, 197
VpaK11BI GGWCC 2 cut(s) 172, 303
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.