Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011728

Physical Location & Seq

Genomic Coordinates Forward (+)

17948741 .. 17951481

Gene Structure 2741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG196900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCACACCATCACTTGGGAGAAAAACACCAACAAACCCCAAACCTGTCTCTCAAGACTCACCCACACTTCCTCCTCAACCATGTCAACCACCATGACCCTAACCCTCTTCAGCCTCCTCTTCCTCTCCTTCACCCTCTCCCACGCCTCCGGCCTCCGCACCGAGGCTGAGGTCCGGGAGCTCTACCAGCACTGGCTGGTCAAGCACCAGAAAGTCTACAACGGCATCGGAGAGGAGGAGACCAGGTTCCAGATCTTCAAGGACAACTTGAAGTTCGTTGATGAGCACAACGCTGAGAACAGGTCCTACAAGGTTGGCTTGAATGCCTTTGCCGACTTGACCAACCAGGAGTACCGGGCCAAGTTTCTCGGCACCCGCTCCGACCCCAAGAGGAGGATCATGAAGGCCAAGAAACCTAGCCTCAGGTACGCTGTGCGCCCCGATGACAAGTTGCCGGAATCCGTGGACTGGAGAGCCTTGGGGGCTGTTAATCCGATCAAAAACCAGGGCAGCTGCGGAAGTTGCTGGGCATTTTCAACAGTGGCTGCAGTGGAAGGCATAAACATGATAACCACAGGAGAACTAGTCTCTCTCTCAGAGCAAGAGCTTGTTGACTGCGACAGGACTTACAATGCTGGCTGCAATGGAGGCCTTATGGACTACGCCTTTGAGTTCATCATCAAAAACGGTGGCATGGACACTGAATCAGACTACCCTTACAAAGCAGTTGACCAACAGTGTGACGTTTCTTTGGTTAGTACATTGATTCGGAATACTAATAATACCCAATCATTGTTTTCTGGAGTACTTTGTTTGACATTATTGAGTTCATTACAGGAGAGCAACAAGGTTGTTACCATTGATGGGTATGAAGATGTTCCAGCATTCAATGAGGAAGCTTTGAAGAAAGCTGTGGCACATCAACCTGTAAGTGTTGCCATTGAAGCTGGTGGCATGGCTCTTCAGCTTTATGATTCGGTAAGTAATCTCCTCTCCTTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

334

Amino Acids

37.25

Weight (kDa)

5.71

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	62 - 118	2.2e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	151 - 326	3.1e-50	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19400 AT3G19400
fragaria_vesca	FvH4_1g16530
malus_domestica	MD02G1177700.v1.1 MD15G1287500.v1.1
prunus_persica	Prupe.6G230400_v2.0.a1 Prupe.6G230400_v2.0.a1
pyrus_communis	pycom02g14370 pycom15g25110
rosa_chinensis	RchiOBHm_Chr2g0106431
rosa_laevigata	RLG00000017497
rosa_multiflora	Rmu_sc0004015.1_g000003
rosa_roxburghii	Rroxscaffold_2G00137190
rosa_rugosa	Rorug02G0135300
rosa_samantha	Rh2AG186600 Rh2BG196900 Rh2CG191600 Rh2DG192700
rosa_wichuraiana	Rw2G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccBSI	CCGCTC	1 cut(s)	378
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	3 cut(s)	157, 376, 516
AclWI	GGATC	1 cut(s)	404
AcuI	CTGAAG	2 cut(s)	94, 947
AfaI	GTAC	4 cut(s)	353, 428, 760, 807
AfiI	CCNNNNNNNGG	5 cut(s)	15, 163, 393, 468, 864
AgsI	TTSAA	7 cut(s)	259, 271, 322, 537, 889, 904, 944
AhlI	ACTAGT	1 cut(s)	583
AjnI	CCWGG	3 cut(s)	242, 345, 504
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	7 cut(s)	181, 513, 607, 899, 911, 947, 967
AluI	AGCT	7 cut(s)	181, 513, 607, 899, 911, 947, 967
Alw21I	GWGCWC	2 cut(s)	183, 288
Alw26I	GTCTC	3 cut(s)	53, 233, 592
AlwI	GGATC	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	4 cut(s)	151, 357, 405, 649
ApeKI	GCWGC	4 cut(s)	510, 513, 545, 639
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
Asp700I	GAANNNNTTC	1 cut(s)	876
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	3 cut(s)	172, 303, 357
AsuC2I	CCSGG	2 cut(s)	176, 356
AsuHPI	GGTGA	3 cut(s)	52, 124, 991
AvaII	GGWCC	2 cut(s)	172, 303
AxyI	CCTNAGG	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	183, 288
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	4 cut(s)	500, 522, 532, 626
BccI	CCATC	2 cut(s)	17, 857
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	3 cut(s)	244, 347, 506
BcnI	CCSGG	2 cut(s)	176, 356
BcoDI	GTCTC	3 cut(s)	53, 233, 592
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	3 cut(s)	417, 584, 1003
BfmI	CTRYAG	1 cut(s)	546
BglI	GCCNNNNNGGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	4 cut(s)	511, 514, 546, 640
BlsI	GCNGC	4 cut(s)	512, 515, 547, 641
BmcAI	AGTACT	1 cut(s)	807
Bme1390I	CCNGG	5 cut(s)	176, 244, 347, 356, 506
Bme18I	GGWCC	2 cut(s)	172, 303
BmgT120I	GGNCC	3 cut(s)	172, 303, 357
BmiI	GGNNCC	2 cut(s)	248, 373
BmrFI	CCNGG	5 cut(s)	176, 244, 347, 356, 506
BmsI	GCATC	1 cut(s)	234
BpmI	CTGGAG	2 cut(s)	490, 822
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	176, 356
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	162, 462, 477, 505
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 230, 260, 570, 600
Bsc4I	CCNNNNNNNGG	5 cut(s)	15, 163, 393, 468, 864
Bse1I	ACTGG	2 cut(s)	197, 473
Bse21I	CCTNAGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	649
BseBI	CCWGG	3 cut(s)	244, 347, 506
BseDI	CCNNGG	4 cut(s)	162, 462, 477, 505
BseLI	CCNNNNNNNGG	5 cut(s)	15, 163, 393, 468, 864
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	4 cut(s)	159, 285, 436, 609
BseNI	ACTGG	2 cut(s)	197, 473
BseRI	GAGGAG	6 cut(s)	64, 107, 248, 251, 406, 980
BseXI	GCAGC	4 cut(s)	500, 522, 532, 626
BseYI	CCCAGC	1 cut(s)	525
BshFI	GGCC	4 cut(s)	153, 359, 407, 651
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	2 cut(s)	183, 288
BsiSI	CCGG	4 cut(s)	150, 175, 355, 455
BslI	CCNNNNNNNGG	5 cut(s)	15, 163, 393, 468, 864
BsmAI	GTCTC	3 cut(s)	53, 233, 592
BsmI	GAATGC	2 cut(s)	328, 884
BsnI	GGCC	4 cut(s)	153, 359, 407, 651
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	183, 288
Bsp143I	GATC	3 cut(s)	252, 396, 495
BspACI	CCGC	3 cut(s)	157, 376, 516
BspANI	GGCC	4 cut(s)	153, 359, 407, 651
BspCNI	CTCAG	4 cut(s)	160, 286, 435, 608
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	248, 373
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	966
BspT107I	GGYRCC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	197, 473
BssECI	CCNNGG	4 cut(s)	162, 462, 477, 505
BssMI	GATC	3 cut(s)	252, 396, 495
BssT1I	CCWWGG	1 cut(s)	477
Bst2UI	CCWGG	3 cut(s)	244, 347, 506
Bst4CI	ACNGT	3 cut(s)	541, 689, 738
Bst6I	CTCTTC	3 cut(s)	113, 125, 966
BstC8I	GCNNGC	1 cut(s)	637
BstDEI	CTNAG	4 cut(s)	168, 294, 422, 595
BstDSI	CCRYGG	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	3 cut(s)	255, 399, 498
BstMAI	GTCTC	3 cut(s)	53, 233, 592
BstMBI	GATC	3 cut(s)	252, 396, 495
BstMWI	GCNNNNNNNGC	6 cut(s)	187, 202, 482, 522, 648, 944
BstNI	CCWGG	3 cut(s)	244, 347, 506
BstSCI	CCNGG	5 cut(s)	174, 242, 345, 354, 504
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	4 cut(s)	500, 522, 532, 626
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	422
BsuRI	GGCC	4 cut(s)	153, 359, 407, 651
BtgI	CCRYGG	1 cut(s)	462
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	5 cut(s)	190, 546, 555, 699, 743
Cac8I	GCNNGC	1 cut(s)	637
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	1 cut(s)	399
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	3 cut(s)	172, 303, 357
CsiI	ACCWGGT	1 cut(s)	242
Csp6I	GTAC	4 cut(s)	352, 427, 759, 806
CspCI	CAANNNNNGTGG	2 cut(s)	670, 705
CviAII	CATG	6 cut(s)	82, 94, 400, 565, 694, 955
CviQI	GTAC	4 cut(s)	352, 427, 759, 806
DdeI	CTNAG	4 cut(s)	168, 294, 422, 595
DpnI	GATC	3 cut(s)	254, 398, 497
DpnII	GATC	3 cut(s)	252, 396, 495
Eam1104I	CTCTTC	3 cut(s)	113, 125, 966
EarI	CTCTTC	3 cut(s)	113, 125, 966
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	172, 303
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	94, 947
Eco81I	CCTNAGG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	303
EcoRII	CCWGG	3 cut(s)	242, 345, 504
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	6 cut(s)	85, 97, 403, 568, 697, 958
FalI	AAGNNNNNCTT	4 cut(s)	251, 283, 302, 334
FatI	CATG	6 cut(s)	81, 93, 399, 564, 693, 954
FauI	CCCGC	1 cut(s)	383
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	511, 514, 546, 640
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	4 cut(s)	511, 514, 546, 640
FspBI	CTAG	3 cut(s)	417, 584, 1003
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	4 cut(s)	511, 514, 546, 640
GsaI	CCCAGC	1 cut(s)	529
GsuI	CTGGAG	2 cut(s)	490, 822
HaeIII	GGCC	4 cut(s)	153, 359, 407, 651
HapII	CCGG	4 cut(s)	150, 175, 355, 455
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	6 cut(s)	85, 97, 403, 568, 697, 958
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	3 cut(s)	87, 613, 730
HindII	GTYRAC	3 cut(s)	87, 613, 730
HindIII	AAGCTT	1 cut(s)	897
HinfI	GANTC	5 cut(s)	57, 458, 704, 766, 974
HpaII	CCGG	4 cut(s)	150, 175, 355, 455
HphI	GGTGA	3 cut(s)	52, 124, 991
Hpy166II	GTNNAC	5 cut(s)	87, 217, 466, 613, 730
Hpy188I	TCNGA	6 cut(s)	230, 382, 495, 598, 709, 771
Hpy188III	TCNNGA	4 cut(s)	54, 250, 400, 801
Hpy8I	GTNNAC	5 cut(s)	87, 217, 466, 613, 730
HpyAV	CCTTC	3 cut(s)	139, 397, 548
HpyCH4III	ACNGT	3 cut(s)	541, 689, 738
HpyCH4IV	ACGT	1 cut(s)	744
HpyCH4V	TGCA	3 cut(s)	4, 548, 642
HpyF10VI	GCNNNNNNNGC	6 cut(s)	187, 202, 482, 522, 648, 944
HpyF3I	CTNAG	4 cut(s)	168, 294, 422, 595
HpySE526I	ACGT	1 cut(s)	744
Hsp92II	CATG	6 cut(s)	85, 97, 403, 568, 697, 958
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	252, 396, 495
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	2 cut(s)	178, 383
Lsp1109I	GCAGC	4 cut(s)	500, 522, 532, 626
LweI	GCATC	1 cut(s)	234
MabI	ACCWGGT	1 cut(s)	242
MaeI	CTAG	3 cut(s)	417, 584, 1003
MaeII	ACGT	1 cut(s)	744
MaeIII	GTNAC	2 cut(s)	740, 853
MalI	GATC	3 cut(s)	254, 398, 497
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	3 cut(s)	252, 396, 495
MboII	GAAGA	6 cut(s)	100, 112, 247, 884, 916, 953
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	2 cut(s)	183, 288
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	876
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	513
MspI	CCGG	4 cut(s)	150, 175, 355, 455
MspR9I	CCNGG	5 cut(s)	176, 244, 347, 356, 506
Mva1269I	GAATGC	2 cut(s)	328, 884
MvaI	CCWGG	3 cut(s)	244, 347, 506
MwoI	GCNNNNNNNGC	6 cut(s)	187, 202, 482, 522, 648, 944
NciI	CCSGG	2 cut(s)	176, 356
NdeII	GATC	3 cut(s)	252, 396, 495
NlaIII	CATG	6 cut(s)	85, 97, 403, 568, 697, 958
NlaIV	GGNNCC	2 cut(s)	248, 373
NmeAIII	GCCGAG	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	740
PagI	TCATGA	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	651
PciSI	GCTCTTC	1 cut(s)	966
PctI	GAATGC	2 cut(s)	328, 884
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	4 cut(s)	458, 704, 766, 974
PflMI	CCANNNNNTGG	1 cut(s)	15
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	4 cut(s)	512, 515, 547, 641
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	303
Psp6I	CCWGG	3 cut(s)	242, 345, 504
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	3 cut(s)	242, 345, 504
PspN4I	GGNNCC	2 cut(s)	248, 373
PspPI	GGNCC	3 cut(s)	172, 303, 357
PspPPI	RGGWCCY	1 cut(s)	303
PsrI	GAACNNNNNNTAC	2 cut(s)	290, 322
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	513
RsaI	GTAC	4 cut(s)	353, 428, 760, 807
RsaNI	GTAC	4 cut(s)	352, 427, 759, 806
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	4 cut(s)	511, 514, 546, 640
Sau3AI	GATC	3 cut(s)	252, 396, 495
Sau96I	GGNCC	3 cut(s)	172, 303, 357
ScaI	AGTACT	1 cut(s)	807
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	5 cut(s)	176, 244, 347, 356, 506
SduI	GDGCHC	2 cut(s)	183, 288
SexAI	ACCWGGT	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	172, 303
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	583
SseBI	AGGCCT	1 cut(s)	651
SsiI	CCGC	3 cut(s)	157, 376, 516
SspMI	CTAG	3 cut(s)	417, 584, 1003
SstI	GAGCTC	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	651
StyD4I	CCNGG	5 cut(s)	174, 242, 345, 354, 504
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	541, 689, 738
TaiI	ACGT	1 cut(s)	747
TatI	WGTACW	2 cut(s)	758, 805
TfiI	GAWTC	4 cut(s)	458, 704, 766, 974
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	5 cut(s)	197, 546, 555, 706, 743
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	4 cut(s)	510, 513, 545, 639
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	4 cut(s)	416, 664, 819, 885
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	5 cut(s)	197, 546, 555, 706, 743
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	2 cut(s)	172, 303
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	3 cut(s)	417, 584, 1003
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.