Rh2DG192700

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
17544431 .. 17547211
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG192700.1

Sequence Viewer

Length: 1230 bp
ATGTACACCATCACTTGGGAGAAAAACACCAACAAACCCCAAACCTGTCTCTCAAGACTCACCCACACTTTCTCCTCAACCATGTCAACCACCATGACCCTAACCCTCTTCAGCCTCCTCTTCCTCTCCTTCACCCTCTCCCACGCCTCCAGCCTCCGCACCGAGGCTGAGGTCCGGGAGCTCTACCAGCACTGGCTGGTCAAGCACCAGAAAGTCTACAACGGCATCGGAGAGGAGGAGACCAGGTTCCAGATCTTCAAGGACAACTTGAAGTTCGTTGATGAGCACAACGCTGAGAACAGGTCCTACAAGGTTGGCTTGAATGCCTTTGCCGACTTGACCAACCAGGAGTACCGGGCCAAGTTTCTCGGCACCCGCTCCGACCCCAAGAGGAGGATCATGAAGGCCAAGAAACCTAGCCTCAGGTACGCTGTGCGCCCCGATGACAAGTTGCCGGAATCCGTGGACTGGAGAGCCTTGGGGGCTGTTAATCCGATCAAAAACCAAGGCAGCTGCGGAAGTTGCTGGGCATTTTCAACAGTGGCTGCAGTGGAAGGCATAAACATGATAACCACAGGAGAACTAGTCTCTCTCTCAGAGCAAGAGCTTGTTGACTGCGACAGGACTTACAACGCTGGCTGCAATGGAGGCCTTATGGACTACGCCTTTGAGTTCATCATCAAAAACGGTGGCATGGACACTGAATCAGACTACCCTTACAAAGCAGTTGACCAACAGTGTGACGTTTCTTTGGTTAGTACATTGATTCGGAATACTAATAATACCCAATCATTGTTTTCTGGAGTACTTTGTTTGACATTATTAAGTTCATTACAGGAGAGCAACAAGGTTGTTACCATTGATGGGTATGAAGATGTTCCAGCATTCAATGAGGAAGCTTTGAAGAAAGCTGTGGCACATCAACCTGTAAGTGTTGCCATTGAAGCTGGTGGCATGGCTCTTCAGCTTTATGATTCGGGTGTGTTTACCGGTGAATGTGGATCAGCACTGGATCATGGTGTGGTTGCTGTTGGGTATGGCACAGAGAATGGTGTGGACTACTGGCTCGTGAGGAACTCATGGGGAACCAACTGGGGTGAGAGTGGATATTTCAAGATGGAGCGCAATGTGAAGAGCATATATACTGGCAAGTGTGGTATTGCCATGGAGGCTTCTTACCCAACCAAGGATAGTGCACAAAACCCAATCCAGATGGTCACCAGCATGTGA

Protein Analysis

409

Amino Acids

45.49

Weight (kDa)

5.51

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 62 - 118 2.9e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 151 - 395 1.7e-82 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011728)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AccB7I CCANNNNNTGG 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 378
AccI GTMKAC 1 cut(s) 216
AciI CCGC 3 cut(s) 157, 376, 516
AclWI GGATC 3 cut(s) 404, 1009, 1020
AcuI CTGAAG 2 cut(s) 94, 947
AfaI GTAC 5 cut(s) 5, 353, 428, 760, 807
AfiI CCNNNNNNNGG 6 cut(s) 15, 163, 393, 468, 864, 1186
AgeI ACCGGT 1 cut(s) 989
AgsI TTSAA 8 cut(s) 259, 271, 322, 537, 889, 904, 944, 1114
AhlI ACTAGT 1 cut(s) 583
AjnI CCWGG 2 cut(s) 242, 345
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 7 cut(s) 181, 513, 607, 899, 911, 947, 967
AluI AGCT 7 cut(s) 181, 513, 607, 899, 911, 947, 967
Alw21I GWGCWC 3 cut(s) 183, 288, 1198
Alw26I GTCTC 3 cut(s) 53, 233, 592
Alw44I GTGCAC 1 cut(s) 1194
AlwI GGATC 3 cut(s) 404, 1009, 1020
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 3 cut(s) 357, 405, 649
ApaLI GTGCAC 1 cut(s) 1194
ApeKI GCWGC 4 cut(s) 510, 513, 545, 639
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AsiGI ACCGGT 1 cut(s) 989
Asp700I GAANNNNTTC 1 cut(s) 876
AspLEI GCGC 2 cut(s) 438, 1125
AspS9I GGNCC 3 cut(s) 172, 303, 357
AsuC2I CCSGG 2 cut(s) 176, 356
AsuHPI GGTGA 5 cut(s) 52, 124, 1004, 1109, 1210
AvaII GGWCC 2 cut(s) 172, 303
AxyI CCTNAGG 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 1198
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 1 cut(s) 1067
Bbv12I GWGCWC 3 cut(s) 183, 288, 1198
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 4 cut(s) 500, 522, 532, 626
BccI CCATC 4 cut(s) 17, 857, 1111, 1207
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 2 cut(s) 244, 347
BcnI CCSGG 2 cut(s) 176, 356
BcoDI GTCTC 3 cut(s) 53, 233, 592
BcuI ACTAGT 1 cut(s) 583
BfaI CTAG 2 cut(s) 417, 584
BfmI CTRYAG 1 cut(s) 546
BglI GCCNNNNNGGC 2 cut(s) 482, 1169
BglII AGATCT 1 cut(s) 252
BisI GCNGC 4 cut(s) 511, 514, 546, 640
BlsI GCNGC 4 cut(s) 512, 515, 547, 641
BmcAI AGTACT 1 cut(s) 807
Bme1390I CCNGG 4 cut(s) 176, 244, 347, 356
Bme18I GGWCC 2 cut(s) 172, 303
BmgT120I GGNCC 3 cut(s) 172, 303, 357
BmiI GGNNCC 3 cut(s) 248, 373, 1087
BmrFI CCNGG 4 cut(s) 176, 244, 347, 356
BmrI ACTGGG 1 cut(s) 1102
BmsI GCATC 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 1102
BpmI CTGGAG 3 cut(s) 133, 490, 822
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 2 cut(s) 176, 356
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 6 cut(s) 162, 462, 477, 505, 1164, 1185
BsaWI WCCGGW 1 cut(s) 989
BsaXI ACNNNNNCTCC 6 cut(s) 56, 86, 230, 260, 570, 600
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 163, 393, 468, 864, 1186
Bse118I RCCGGY 1 cut(s) 989
Bse1I ACTGG 6 cut(s) 197, 473, 1014, 1067, 1097, 1150
Bse21I CCTNAGG 1 cut(s) 422
Bse3DI GCAATG 2 cut(s) 649, 1132
BseBI CCWGG 2 cut(s) 244, 347
BseDI CCNNGG 6 cut(s) 162, 462, 477, 505, 1164, 1185
BseLI CCNNNNNNNGG 6 cut(s) 15, 163, 393, 468, 864, 1186
BseMI GCAATG 2 cut(s) 649, 1132
BseMII CTCAG 4 cut(s) 159, 285, 436, 609
BseNI ACTGG 6 cut(s) 197, 473, 1014, 1067, 1097, 1150
BseRI GAGGAG 5 cut(s) 64, 107, 248, 251, 406
BseSI GKGCMC 1 cut(s) 1198
BseXI GCAGC 4 cut(s) 500, 522, 532, 626
BseYI CCCAGC 1 cut(s) 525
BshFI GGCC 3 cut(s) 359, 407, 651
BshNI GGYRCC 1 cut(s) 371
BshTI ACCGGT 1 cut(s) 989
BsiHKAI GWGCWC 3 cut(s) 183, 288, 1198
BsiSI CCGG 4 cut(s) 175, 355, 455, 990
BslI CCNNNNNNNGG 6 cut(s) 15, 163, 393, 468, 864, 1186
BsmAI GTCTC 3 cut(s) 53, 233, 592
BsmI GAATGC 2 cut(s) 328, 884
BsnI GGCC 3 cut(s) 359, 407, 651
Bso31I GGTCTC 1 cut(s) 233
Bsp1286I GDGCHC 3 cut(s) 183, 288, 1198
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 252, 396, 495, 1001, 1012
Bsp19I CCATGG 1 cut(s) 1164
BspACI CCGC 3 cut(s) 157, 376, 516
BspANI GGCC 3 cut(s) 359, 407, 651
BspCNI CTCAG 4 cut(s) 160, 286, 435, 608
BspHI TCATGA 1 cut(s) 399
BspLI GGNNCC 3 cut(s) 248, 373, 1087
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 3 cut(s) 404, 1009, 1020
BspQI GCTCTTC 2 cut(s) 966, 1127
BspT107I GGYRCC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 378
BsrDI GCAATG 2 cut(s) 649, 1132
BsrFI RCCGGY 1 cut(s) 989
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 6 cut(s) 197, 473, 1014, 1067, 1097, 1150
BssAI RCCGGY 1 cut(s) 989
BssECI CCNNGG 6 cut(s) 162, 462, 477, 505, 1164, 1185
BssMI GATC 5 cut(s) 252, 396, 495, 1001, 1012
BssSI CACGAG 1 cut(s) 1067
BssT1I CCWWGG 4 cut(s) 477, 505, 1164, 1185
Bst2BI CACGAG 1 cut(s) 1067
Bst2UI CCWGG 2 cut(s) 244, 347
Bst4CI ACNGT 3 cut(s) 541, 689, 738
Bst6I CTCTTC 4 cut(s) 113, 125, 966, 1127
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 4 cut(s) 168, 294, 422, 595
BstDSI CCRYGG 2 cut(s) 462, 1164
BstEII GGTNACC 1 cut(s) 1216
BstHHI GCGC 2 cut(s) 438, 1125
BstKTI GATC 5 cut(s) 255, 399, 498, 1004, 1015
BstMAI GTCTC 3 cut(s) 53, 233, 592
BstMBI GATC 5 cut(s) 252, 396, 495, 1001, 1012
BstMWI GCNNNNNNNGC 7 cut(s) 187, 202, 482, 522, 648, 944, 1169
BstNI CCWGG 2 cut(s) 244, 347
BstNSI RCATGY 1 cut(s) 1228
BstPI GGTNACC 1 cut(s) 1216
BstSCI CCNGG 4 cut(s) 174, 242, 345, 354
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 1198
BstV1I GCAGC 4 cut(s) 500, 522, 532, 626
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 422
BsuRI GGCC 3 cut(s) 359, 407, 651
BtgI CCRYGG 2 cut(s) 462, 1164
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 6 cut(s) 190, 546, 555, 699, 743, 1007
Cac8I GCNNGC 1 cut(s) 637
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 1 cut(s) 399
CfoI GCGC 2 cut(s) 438, 1125
Cfr10I RCCGGY 1 cut(s) 989
Cfr13I GGNCC 3 cut(s) 172, 303, 357
CsiI ACCWGGT 1 cut(s) 242
Csp6I GTAC 5 cut(s) 4, 352, 427, 759, 806
CspAI ACCGGT 1 cut(s) 989
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviQI GTAC 5 cut(s) 4, 352, 427, 759, 806
DdeI CTNAG 4 cut(s) 168, 294, 422, 595
DpnI GATC 5 cut(s) 254, 398, 497, 1003, 1014
DpnII GATC 5 cut(s) 252, 396, 495, 1001, 1012
Eam1104I CTCTTC 4 cut(s) 113, 125, 966, 1127
EarI CTCTTC 4 cut(s) 113, 125, 966, 1127
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 4 cut(s) 477, 505, 1164, 1185
Eco147I AGGCCT 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 2 cut(s) 172, 303
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 94, 947
Eco81I CCTNAGG 1 cut(s) 422
Eco91I GGTNACC 1 cut(s) 1216
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 303
EcoO65I GGTNACC 1 cut(s) 1216
EcoRII CCWGG 2 cut(s) 242, 345
EcoT14I CCWWGG 4 cut(s) 477, 505, 1164, 1185
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 4 cut(s) 477, 505, 1164, 1185
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 302, 334
FauI CCCGC 1 cut(s) 383
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 511, 514, 546, 640
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 4 cut(s) 511, 514, 546, 640
FspBI CTAG 2 cut(s) 417, 584
GlaI GCGC 2 cut(s) 437, 1124
GluI GCNGC 4 cut(s) 511, 514, 546, 640
GsaI CCCAGC 1 cut(s) 529
GsuI CTGGAG 3 cut(s) 133, 490, 822
HaeIII GGCC 3 cut(s) 359, 407, 651
HapII CCGG 4 cut(s) 175, 355, 455, 990
HhaI GCGC 2 cut(s) 438, 1125
Hin6I GCGC 2 cut(s) 436, 1123
HinP1I GCGC 2 cut(s) 436, 1123
HincII GTYRAC 3 cut(s) 87, 613, 730
HindII GTYRAC 3 cut(s) 87, 613, 730
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 5 cut(s) 57, 458, 704, 766, 974
HpaII CCGG 4 cut(s) 175, 355, 455, 990
HphI GGTGA 5 cut(s) 52, 124, 1004, 1109, 1210
Hpy166II GTNNAC 9 cut(s) 6, 87, 217, 466, 613, 730, 987, 1057, 1196
Hpy188I TCNGA 6 cut(s) 230, 382, 495, 598, 709, 771
Hpy188III TCNNGA 7 cut(s) 54, 250, 400, 801, 1069, 1114, 1210
Hpy8I GTNNAC 9 cut(s) 6, 87, 217, 466, 613, 730, 987, 1057, 1196
HpyAV CCTTC 3 cut(s) 139, 397, 548
HpyCH4III ACNGT 3 cut(s) 541, 689, 738
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 3 cut(s) 548, 642, 1196
HpyF10VI GCNNNNNNNGC 7 cut(s) 187, 202, 482, 522, 648, 944, 1169
HpyF3I CTNAG 4 cut(s) 168, 294, 422, 595
HpySE526I ACGT 1 cut(s) 744
HspAI GCGC 2 cut(s) 436, 1123
Kzo9I GATC 5 cut(s) 252, 396, 495, 1001, 1012
LguI GCTCTTC 2 cut(s) 966, 1127
LmnI GCTCC 3 cut(s) 178, 383, 1120
Lsp1109I GCAGC 4 cut(s) 500, 522, 532, 626
LweI GCATC 1 cut(s) 234
MabI ACCWGGT 1 cut(s) 242
MaeI CTAG 2 cut(s) 417, 584
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 3 cut(s) 740, 853, 1216
MalI GATC 5 cut(s) 254, 398, 497, 1003, 1014
MbiI CCGCTC 1 cut(s) 378
MboI GATC 5 cut(s) 252, 396, 495, 1001, 1012
MboII GAAGA 7 cut(s) 100, 112, 247, 884, 916, 953, 1144
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 3 cut(s) 183, 288, 1198
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 405
MroXI GAANNNNTTC 1 cut(s) 876
MseI TTAA 2 cut(s) 489, 824
MslI CAYNNNNRTG 2 cut(s) 563, 1223
MspA1I CMGCKG 1 cut(s) 513
MspI CCGG 4 cut(s) 175, 355, 455, 990
MspR9I CCNGG 4 cut(s) 176, 244, 347, 356
Mva1269I GAATGC 2 cut(s) 328, 884
MvaI CCWGG 2 cut(s) 244, 347
MwoI GCNNNNNNNGC 7 cut(s) 187, 202, 482, 522, 648, 944, 1169
NciI CCSGG 2 cut(s) 176, 356
NcoI CCATGG 1 cut(s) 1164
NdeII GATC 5 cut(s) 252, 396, 495, 1001, 1012
NlaIV GGNNCC 3 cut(s) 248, 373, 1087
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 740, 1216
NspI RCATGY 1 cut(s) 1228
PagI TCATGA 1 cut(s) 399
PceI AGGCCT 1 cut(s) 651
PciSI GCTCTTC 2 cut(s) 966, 1127
PctI GAATGC 2 cut(s) 328, 884
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 4 cut(s) 458, 704, 766, 974
PflMI CCANNNNNTGG 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 174
PinAI ACCGGT 1 cut(s) 989
PkrI GCNGC 4 cut(s) 512, 515, 547, 641
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 242, 345
PspEI GGTNACC 1 cut(s) 1216
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 2 cut(s) 242, 345
PspN4I GGNNCC 3 cut(s) 248, 373, 1087
PspPI GGNCC 3 cut(s) 172, 303, 357
PspPPI RGGWCCY 1 cut(s) 303
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 513
RsaI GTAC 5 cut(s) 5, 353, 428, 760, 807
RsaNI GTAC 5 cut(s) 4, 352, 427, 759, 806
RseI CAYNNNNRTG 2 cut(s) 563, 1223
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 2 cut(s) 966, 1127
SaqAI TTAA 2 cut(s) 489, 824
SatI GCNGC 4 cut(s) 511, 514, 546, 640
Sau3AI GATC 5 cut(s) 252, 396, 495, 1001, 1012
Sau96I GGNCC 3 cut(s) 172, 303, 357
ScaI AGTACT 1 cut(s) 807
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 4 cut(s) 176, 244, 347, 356
SduI GDGCHC 3 cut(s) 183, 288, 1198
SexAI ACCWGGT 1 cut(s) 242
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 2 cut(s) 172, 303
SmiMI CAYNNNNRTG 2 cut(s) 563, 1223
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SpeI ACTAGT 1 cut(s) 583
SseBI AGGCCT 1 cut(s) 651
SsiI CCGC 3 cut(s) 157, 376, 516
SspMI CTAG 2 cut(s) 417, 584
SstI GAGCTC 1 cut(s) 183
StuI AGGCCT 1 cut(s) 651
StyD4I CCNGG 4 cut(s) 174, 242, 345, 354
StyI CCWWGG 4 cut(s) 477, 505, 1164, 1185
TaaI ACNGT 3 cut(s) 541, 689, 738
TaiI ACGT 1 cut(s) 747
TatI WGTACW 3 cut(s) 3, 758, 805
TfiI GAWTC 4 cut(s) 458, 704, 766, 974
Tru1I TTAA 2 cut(s) 489, 824
Tru9I TTAA 2 cut(s) 489, 824
TscAI CASTG 6 cut(s) 197, 546, 555, 706, 743, 1014
TseFI GTSAC 2 cut(s) 740, 1216
TseI GCWGC 4 cut(s) 510, 513, 545, 639
Tsp45I GTSAC 2 cut(s) 740, 1216
TspDTI ATGAA 4 cut(s) 416, 664, 819, 885
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 6 cut(s) 197, 546, 555, 706, 743, 1014
Van91I CCANNNNNTGG 1 cut(s) 15
VneI GTGCAC 1 cut(s) 1194
VpaK11BI GGWCC 2 cut(s) 172, 303
XceI RCATGY 1 cut(s) 1228
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 876
XspI CTAG 2 cut(s) 417, 584
ZrmI AGTACT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.