MD15G1287500.v1.1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
26436341 .. 26439309
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1287500.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGGCATCAACCATGTCTCTCGCCGTATTCACCATCCTCTTCCTCTCCTTCACCCTCTCATACTCCTCCCCGATCGTCGACTCTCGGAGCGAGGCCGACGTCAAAGCCATCTACCAAGAGTGGCTCGTGAAGCACCAAAAGACGTACAACGGCATCGGGGAGGAGGAGAGGAGGTTCGAGATCTTCAAGGACAACATGAAGTTCATCGACGAGCATAATGCACAGGACCGTCCGTACAAGGTCGGTCTGAACGCTTTTGCTGACCTGACCAACCAAGAGTACCGTGCCAAGTTTTTGGGCACCAGGAGTGACCCTAAGCGCAGGGTCATGAAAGCCAAGAAGCCGAGCCTGAGGTACGCTTTTCGCGCAGGCGAAACGCTGCCGGAATCTGTGGATTGGAGAGTCAAGGGTGCCGTGAATCCCATAAAAAATCAAGGAAGTTGCGGAAGTTGCTGGGCTTTCTCGACAGTGGCCGCGGTGGAGGGCATAAACCAAATAGTCACAGGAGAGTTGGTGTCTCTCTCAGAGCAAGAGCTCGTAGACTGCGACAGATCCTACAACGCCGGCTGCAATGGCGGTCTCATGGATTACGCCTTCGAGTTCATCATCCAAAACGGCGGTATGGACACTGAATCGGACTACCCTTACAAAGCATATGACCAAAAATGCAACGTTGCACTGGAGAAGAATAAGGTTGTTAGCATTGACGGGTACGAAGATGTTCCGTCCTATGACGAGAACGCTTTGAAGAAAGCCGTTGCACACCAACCCGTTAGCGTTGCCATTGAAGCCGGCGGTAGGGCCCTACAACTCTACGAGTCGGGTGTTTTCACCGGTGAGTGCGGGTCAGCATTGGACCATGGTGTCGTTGCTGTTGGGTATGGCACCGAGAACGGCACGGACTATTGGTTGGTGAGGAACTCGTGGGGCGCCAACTGGGGAGAGAGTGGATATTTTAAGATGGAGAGAAATGTTGCAAGCACATACACAGGCAAGTGTGGAATTGCAATGGAGGCTTCTTACCCAACAAAGAAGGACCAAAAGTACCCATCAAGCTCTTTCTTTGCTGAGGAAGACATCAAGATGGTCACAAGTGCATGA

Protein Analysis

367

Amino Acids

40.66

Weight (kDa)

5.2

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 94 3.3e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 127 - 343 3.1e-86 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011728)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 863
AatII GACGTC 1 cut(s) 102
AccB1I GGYRCC 4 cut(s) 299, 410, 884, 929
AccI GTMKAC 2 cut(s) 78, 540
AccII CGCG 2 cut(s) 366, 476
AciI CCGC 7 cut(s) 444, 474, 476, 576, 618, 795, 843
AclI AACGTT 1 cut(s) 672
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 471
AcyI GRCGYC 2 cut(s) 99, 930
AfaI GTAC 6 cut(s) 146, 236, 281, 356, 713, 1046
AfiI CCNNNNNNNGG 1 cut(s) 798
AgeI ACCGGT 1 cut(s) 833
AgsI TTSAA 3 cut(s) 187, 748, 788
AjnI CCWGG 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 2 cut(s) 535, 1056
AluI AGCT 2 cut(s) 535, 1056
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 3 cut(s) 21, 522, 584
AlwI GGATC 1 cut(s) 546
AoxI GGCC 3 cut(s) 93, 471, 801
ApaI GGGCCC 1 cut(s) 805
ApeKI GCWGC 2 cut(s) 379, 567
AsiGI ACCGGT 1 cut(s) 833
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 3 cut(s) 321, 368, 932
AspS9I GGNCC 5 cut(s) 226, 801, 802, 856, 1036
AsuHPI GGTGA 5 cut(s) 22, 43, 823, 848, 925
AvaII GGWCC 3 cut(s) 226, 856, 1036
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 2 cut(s) 302, 805
BanI GGYRCC 4 cut(s) 299, 410, 884, 929
BanII GRGCYC 2 cut(s) 537, 805
BauI CACGAG 2 cut(s) 125, 922
BbsI GAAGAC 1 cut(s) 1080
Bbv12I GWGCWC 1 cut(s) 537
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 2 cut(s) 366, 554
BccI CCATC 5 cut(s) 41, 116, 955, 1057, 1078
BceAI ACGGC 6 cut(s) 8, 166, 398, 631, 740, 910
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 21, 522, 584
BfoI RGCGCY 1 cut(s) 933
BglII AGATCT 1 cut(s) 180
BisI GCNGC 3 cut(s) 380, 474, 568
BlsI GCNGC 3 cut(s) 381, 475, 569
Bme1390I CCNGG 1 cut(s) 304
Bme18I GGWCC 3 cut(s) 226, 856, 1036
BmgT120I GGNCC 5 cut(s) 226, 801, 802, 856, 1036
BmiI GGNNCC 5 cut(s) 301, 412, 803, 886, 931
BmrFI CCNGG 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 2 cut(s) 14, 162
BmuI ACTGGG 1 cut(s) 946
BpiI GAAGAC 1 cut(s) 1080
BpmI CTGGAG 1 cut(s) 701
Bpu10I CCTNAGC 2 cut(s) 315, 1068
BsaHI GRCGYC 2 cut(s) 99, 930
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 474, 859
BsaWI WCCGGW 1 cut(s) 833
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse118I RCCGGY 3 cut(s) 563, 791, 833
Bse1I ACTGG 2 cut(s) 684, 941
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 2 cut(s) 577, 1014
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 474, 859
BseGI GGATG 2 cut(s) 33, 606
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMI GCAATG 2 cut(s) 577, 1014
BseMII CTCAG 3 cut(s) 341, 537, 1059
BseNI ACTGG 2 cut(s) 684, 941
BseRI GAGGAG 4 cut(s) 55, 176, 179, 184
BseSI GKGCMC 2 cut(s) 302, 805
BseXI GCAGC 2 cut(s) 366, 554
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 2 cut(s) 366, 476
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 95, 473, 803
BshNI GGYRCC 4 cut(s) 299, 410, 884, 929
BshTI ACCGGT 1 cut(s) 833
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 4 cut(s) 383, 564, 792, 834
BslI CCNNNNNNNGG 1 cut(s) 798
BsmAI GTCTC 3 cut(s) 21, 522, 584
BsnI GGCC 3 cut(s) 95, 473, 803
Bso31I GGTCTC 1 cut(s) 584
Bsp120I GGGCCC 1 cut(s) 801
Bsp1286I GDGCHC 3 cut(s) 302, 537, 805
Bsp143I GATC 3 cut(s) 72, 180, 551
Bsp19I CCATGG 1 cut(s) 859
BspACI CCGC 7 cut(s) 444, 474, 476, 576, 618, 795, 843
BspANI GGCC 3 cut(s) 95, 473, 803
BspCNI CTCAG 3 cut(s) 342, 536, 1060
BspFNI CGCG 2 cut(s) 366, 476
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 5 cut(s) 301, 412, 803, 886, 931
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 4 cut(s) 299, 410, 884, 929
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 577, 1014
BsrFI RCCGGY 3 cut(s) 563, 791, 833
BsrI ACTGG 2 cut(s) 684, 941
BssAI RCCGGY 3 cut(s) 563, 791, 833
BssECI CCNNGG 2 cut(s) 474, 859
BssMI GATC 3 cut(s) 72, 180, 551
BssNI GRCGYC 2 cut(s) 99, 930
BssSI CACGAG 2 cut(s) 125, 922
BssT1I CCWWGG 1 cut(s) 859
Bst2BI CACGAG 2 cut(s) 125, 922
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 3 cut(s) 230, 284, 469
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 2 cut(s) 99, 930
BstC8I GCNNGC 4 cut(s) 370, 565, 793, 979
BstDEI CTNAG 4 cut(s) 315, 350, 523, 1068
BstDSI CCRYGG 2 cut(s) 474, 859
BstF5I GGATG 2 cut(s) 33, 606
BstFNI CGCG 2 cut(s) 366, 476
BstH2I RGCGCY 1 cut(s) 933
BstHHI GCGC 3 cut(s) 321, 368, 932
BstKTI GATC 3 cut(s) 75, 183, 554
BstMAI GTCTC 3 cut(s) 21, 522, 584
BstMBI GATC 3 cut(s) 72, 180, 551
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 6 cut(s) 130, 365, 450, 573, 788, 1013
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 302
BstSLI GKGCMC 2 cut(s) 302, 805
BstUI CGCG 2 cut(s) 366, 476
BstV1I GCAGC 2 cut(s) 366, 554
BstV2I GAAGAC 1 cut(s) 1080
BstX2I RGATCY 2 cut(s) 180, 551
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 2 cut(s) 180, 551
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 3 cut(s) 95, 473, 803
BtgI CCRYGG 2 cut(s) 474, 859
BtsCI GGATG 2 cut(s) 33, 606
BtsIMutI CAGTG 3 cut(s) 474, 627, 677
Cac8I GCNNGC 4 cut(s) 370, 565, 793, 979
CciI TCATGA 1 cut(s) 327
CfoI GCGC 3 cut(s) 321, 368, 932
Cfr10I RCCGGY 3 cut(s) 563, 791, 833
Cfr13I GGNCC 5 cut(s) 226, 801, 802, 856, 1036
Cfr42I CCGCGG 1 cut(s) 477
Csp6I GTAC 6 cut(s) 145, 235, 280, 355, 712, 1045
CspAI ACCGGT 1 cut(s) 833
CviAII CATG 6 cut(s) 13, 196, 328, 583, 860, 1098
CviQI GTAC 6 cut(s) 145, 235, 280, 355, 712, 1045
DdeI CTNAG 4 cut(s) 315, 350, 523, 1068
DinI GGCGCC 1 cut(s) 931
DpnI GATC 3 cut(s) 74, 182, 553
DpnII GATC 3 cut(s) 72, 180, 551
DrdI GACNNNNNNGTC 1 cut(s) 863
DseDI GACNNNNNNGTC 1 cut(s) 863
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 859
Eco24I GRGCYC 2 cut(s) 537, 805
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 3 cut(s) 226, 856, 1036
Eco53kI GAGCTC 1 cut(s) 535
Eco81I CCTNAGG 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 535
EcoO109I RGGNCCY 2 cut(s) 801, 802
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 859
EcoT38I GRGCYC 2 cut(s) 537, 805
EgeI GGCGCC 1 cut(s) 931
EheI GGCGCC 1 cut(s) 931
ErhI CCWWGG 1 cut(s) 859
FaeI CATG 6 cut(s) 16, 199, 331, 586, 863, 1101
FatI CATG 6 cut(s) 12, 195, 327, 582, 859, 1097
FauI CCCGC 1 cut(s) 836
FauNDI CATATG 1 cut(s) 655
FblI GTMKAC 2 cut(s) 78, 540
Fnu4HI GCNGC 3 cut(s) 380, 474, 568
FokI GGATG 2 cut(s) 20, 593
FriOI GRGCYC 2 cut(s) 537, 805
Fsp4HI GCNGC 3 cut(s) 380, 474, 568
GlaI GCGC 3 cut(s) 320, 367, 931
GluI GCNGC 3 cut(s) 380, 474, 568
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 701
HaeII RGCGCY 1 cut(s) 933
HaeIII GGCC 3 cut(s) 95, 473, 803
HapII CCGG 4 cut(s) 383, 564, 792, 834
HhaI GCGC 3 cut(s) 321, 368, 932
Hin1I GRCGYC 2 cut(s) 99, 930
Hin1II CATG 6 cut(s) 16, 199, 331, 586, 863, 1101
Hin6I GCGC 3 cut(s) 319, 366, 930
HinP1I GCGC 3 cut(s) 319, 366, 930
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 6 cut(s) 80, 386, 402, 418, 632, 818
HpaII CCGG 4 cut(s) 383, 564, 792, 834
HphI GGTGA 5 cut(s) 22, 43, 823, 848, 925
Hpy166II GTNNAC 2 cut(s) 79, 541
Hpy188I TCNGA 4 cut(s) 87, 249, 526, 637
Hpy188III TCNNGA 5 cut(s) 127, 178, 328, 463, 1081
Hpy8I GTNNAC 2 cut(s) 79, 541
Hpy99I CGWCG 3 cut(s) 80, 101, 212
HpyAV CCTTC 3 cut(s) 58, 604, 1027
HpyCH4III ACNGT 3 cut(s) 230, 284, 469
HpyCH4IV ACGT 3 cut(s) 99, 143, 672
HpyCH4V TGCA 8 cut(s) 221, 570, 669, 677, 761, 977, 1007, 1097
HpyF10VI GCNNNNNNNGC 6 cut(s) 130, 365, 450, 573, 788, 1013
HpyF3I CTNAG 4 cut(s) 315, 350, 523, 1068
HpySE526I ACGT 3 cut(s) 99, 143, 672
Hsp92I GRCGYC 2 cut(s) 99, 930
Hsp92II CATG 6 cut(s) 16, 199, 331, 586, 863, 1101
HspAI GCGC 3 cut(s) 319, 366, 930
KasI GGCGCC 1 cut(s) 929
KroI GCCGGC 2 cut(s) 563, 791
KroNI GCCGGC 2 cut(s) 565, 793
KspI CCGCGG 1 cut(s) 477
Kzo9I GATC 3 cut(s) 72, 180, 551
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 2 cut(s) 366, 554
LweI GCATC 2 cut(s) 14, 162
MaeII ACGT 3 cut(s) 99, 143, 672
MaeIII GTNAC 3 cut(s) 308, 499, 1087
MalI GATC 3 cut(s) 74, 182, 553
MboI GATC 3 cut(s) 72, 180, 551
MboII GAAGA 6 cut(s) 31, 175, 697, 728, 760, 1085
MflI RGATCY 2 cut(s) 180, 551
MhlI GDGCHC 3 cut(s) 302, 537, 805
MluCI AATT 1 cut(s) 1002
Mly113I GGCGCC 1 cut(s) 930
MlyI GAGTC 3 cut(s) 74, 411, 827
MroNI GCCGGC 2 cut(s) 563, 791
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 1 cut(s) 957
MslI CAYNNNNRTG 1 cut(s) 1082
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 4 cut(s) 383, 564, 792, 834
MspR9I CCNGG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 304
MvnI CGCG 2 cut(s) 366, 476
MwoI GCNNNNNNNGC 6 cut(s) 130, 365, 450, 573, 788, 1013
NaeI GCCGGC 2 cut(s) 565, 793
NarI GGCGCC 1 cut(s) 930
NcoI CCATGG 1 cut(s) 859
NdeI CATATG 1 cut(s) 655
NdeII GATC 3 cut(s) 72, 180, 551
NgoMIV GCCGGC 2 cut(s) 563, 791
NlaIII CATG 6 cut(s) 16, 199, 331, 586, 863, 1101
NlaIV GGNNCC 5 cut(s) 301, 412, 803, 886, 931
NmeAIII GCCGAG 1 cut(s) 369
NmuCI GTSAC 3 cut(s) 308, 499, 1087
PagI TCATGA 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 543
PdiI GCCGGC 2 cut(s) 565, 793
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 3 cut(s) 386, 418, 632
PinAI ACCGGT 1 cut(s) 833
PkrI GCNGC 3 cut(s) 381, 475, 569
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 3 cut(s) 74, 410, 826
PluTI GGCGCC 1 cut(s) 933
PpsI GAGTC 3 cut(s) 74, 410, 826
Psp124BI GAGCTC 1 cut(s) 537
Psp1406I AACGTT 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 302
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 5 cut(s) 301, 412, 803, 886, 931
PspOMI GGGCCC 1 cut(s) 801
PspPI GGNCC 5 cut(s) 226, 801, 802, 856, 1036
PsuI RGATCY 2 cut(s) 180, 551
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 6 cut(s) 146, 236, 281, 356, 713, 1046
RsaNI GTAC 6 cut(s) 145, 235, 280, 355, 712, 1045
RseI CAYNNNNRTG 1 cut(s) 1082
SacI GAGCTC 1 cut(s) 537
SacII CCGCGG 1 cut(s) 477
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 957
SatI GCNGC 3 cut(s) 380, 474, 568
Sau3AI GATC 3 cut(s) 72, 180, 551
Sau96I GGNCC 5 cut(s) 226, 801, 802, 856, 1036
SchI GAGTC 3 cut(s) 74, 411, 827
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 3 cut(s) 302, 537, 805
SfaNI GCATC 2 cut(s) 14, 162
SfoI GGCGCC 1 cut(s) 931
Sfr303I CCGCGG 1 cut(s) 477
SgrAI CRCCGGYG 1 cut(s) 833
SgrBI CCGCGG 1 cut(s) 477
SinI GGWCC 3 cut(s) 226, 856, 1036
SmiMI CAYNNNNRTG 1 cut(s) 1082
Sse9I AATT 1 cut(s) 1002
SsiI CCGC 7 cut(s) 444, 474, 476, 576, 618, 795, 843
SspDI GGCGCC 1 cut(s) 929
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 302
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 3 cut(s) 230, 284, 469
TaiI ACGT 3 cut(s) 102, 146, 675
TaqI TCGA 5 cut(s) 78, 177, 207, 464, 597
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 1002
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 3 cut(s) 386, 418, 632
Tru1I TTAA 1 cut(s) 957
Tru9I TTAA 1 cut(s) 957
TscAI CASTG 3 cut(s) 474, 634, 684
TseFI GTSAC 3 cut(s) 308, 499, 1087
TseI GCWGC 2 cut(s) 379, 567
Tsp45I GTSAC 3 cut(s) 308, 499, 1087
TspDTI ATGAA 4 cut(s) 193, 212, 344, 592
TspGWI ACGGA 3 cut(s) 222, 714, 914
TspRI CASTG 3 cut(s) 474, 634, 684
VpaK11BI GGWCC 3 cut(s) 226, 856, 1036
XmiI GTMKAC 2 cut(s) 78, 540
XmnI GAANNNNTTC 1 cut(s) 720
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.