Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004015.1

Orthogroup ID

OG0011728

Physical Location & Seq

Genomic Coordinates Forward (+)

10009 .. 12274

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004015.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgtcaaccaccatgaccctaaccctcttcagcctcctcttcctctccttcaccctctcccacgcctccagcctccgcaccgaggctgaggtccgggagctctaccagcactggctggtcaagcaccagaaagtctacaacggcatcggagaggaggaggccaggttccagatcttcaaggacaacttgaagttcgttgatgagcacaacgctgagaacaggtcctacaaggttggcttgaatgcctttgccgacttgaccaaccaggagtaccgggccaagtttctcggcacccgctccgaccccacgaggaggatcatgaaggccaagaaacctagcctcaggtacgctgtgcgccccgatgacaagttgccggaatccgtggactggagagccttgggggctgttaatccgatcaaaaaccaaggcagctgcggaagttgctgggcattttcaacagtggctgcagtggaaggcataaacatgataaccacaggagaactagtctctctctcagagcaagagcttgttgactgcgacaggacttacaacgctggctgcaatggaggccttatggactacgcctttgagttcatcatcaaaaacggtggcatggacactgaatcagactacccttacaaagcagttgaccaacagtgtgacgtttcgttggagagcaacaaggttgttaccattgatgggtatgaagatgttccagcattcaatgaggaagctttgaagaaagctgtggcacatcaacctgtaagtgttgccattgaagctggtggcatggctcttcagctttatgattcgggtgtgtttaccggtgaatgtggatcagctctggatcatggtgtggttgctgttgggtatggcacagagaatggtgtggactactggctcgtgaggaactcatggggaaccaactggggtgagagtggatatttcaagatcgagcgcaatgtgaagagcatatatactggtaagtgtggtattgccatggaggcttcttacccaaccaaggataatgcacaaaacccaatccagatggtcaccagcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

354

Amino Acids

39.27

Weight (kDa)

5.08

Isoelectric Point (pI)

27.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19400 AT3G19400
fragaria_vesca	FvH4_1g16530
malus_domestica	MD02G1177700.v1.1 MD15G1287500.v1.1
prunus_persica	Prupe.6G230400_v2.0.a1 Prupe.6G230400_v2.0.a1
pyrus_communis	pycom02g14370 pycom15g25110
rosa_chinensis	RchiOBHm_Chr2g0106431
rosa_laevigata	RLG00000017497
rosa_multiflora	Rmu_sc0004015.1_g000003
rosa_roxburghii	Rroxscaffold_2G00137190
rosa_rugosa	Rorug02G0135300
rosa_samantha	Rh2AG186600 Rh2BG196900 Rh2CG191600 Rh2DG192700
rosa_wichuraiana	Rw2G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	3 cut(s)	76, 295, 435
AclWI	GGATC	3 cut(s)	323, 844, 855
AcuI	CTGAAG	2 cut(s)	13, 782
AfaI	GTAC	2 cut(s)	272, 347
AfiI	CCNNNNNNNGG	5 cut(s)	82, 312, 387, 699, 1021
AgeI	ACCGGT	1 cut(s)	824
AgsI	TTSAA	8 cut(s)	178, 190, 241, 456, 724, 739, 779, 949
AhlI	ACTAGT	1 cut(s)	502
AjnI	CCWGG	2 cut(s)	161, 264
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AluBI	AGCT	8 cut(s)	100, 432, 526, 734, 746, 782, 802, 842
AluI	AGCT	8 cut(s)	100, 432, 526, 734, 746, 782, 802, 842
Alw21I	GWGCWC	2 cut(s)	102, 207
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	3 cut(s)	323, 844, 855
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	4 cut(s)	159, 276, 324, 568
ApeKI	GCWGC	4 cut(s)	429, 432, 464, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AsiGI	ACCGGT	1 cut(s)	824
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	2 cut(s)	357, 960
AspS9I	GGNCC	3 cut(s)	91, 222, 276
AsuC2I	CCSGG	2 cut(s)	95, 275
AsuHPI	GGTGA	4 cut(s)	43, 839, 944, 1045
AvaII	GGWCC	2 cut(s)	91, 222
AxyI	CCTNAGG	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	102
BauI	CACGAG	2 cut(s)	307, 902
Bbv12I	GWGCWC	2 cut(s)	102, 207
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	419, 441, 451, 545
BccI	CCATC	2 cut(s)	692, 1042
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	163, 266
BcnI	CCSGG	2 cut(s)	95, 275
BcoDI	GTCTC	1 cut(s)	511
BcuI	ACTAGT	1 cut(s)	502
BfaI	CTAG	2 cut(s)	336, 503
BfmI	CTRYAG	1 cut(s)	465
BglI	GCCNNNNNGGC	2 cut(s)	401, 1004
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	4 cut(s)	430, 433, 465, 559
BlsI	GCNGC	4 cut(s)	431, 434, 466, 560
Bme1390I	CCNGG	4 cut(s)	95, 163, 266, 275
Bme18I	GGWCC	2 cut(s)	91, 222
BmgT120I	GGNCC	3 cut(s)	91, 222, 276
BmiI	GGNNCC	3 cut(s)	167, 292, 922
BmrFI	CCNGG	4 cut(s)	95, 163, 266, 275
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	937
BpmI	CTGGAG	2 cut(s)	52, 409
Bpu10I	CCTNAGC	1 cut(s)	87
BpuMI	CCSGG	2 cut(s)	95, 275
BsaJI	CCNNGG	6 cut(s)	81, 381, 396, 424, 999, 1020
BsaWI	WCCGGW	1 cut(s)	824
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 489, 519
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 312, 387, 699, 1021
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	5 cut(s)	116, 392, 902, 932, 985
Bse21I	CCTNAGG	1 cut(s)	341
Bse3DI	GCAATG	2 cut(s)	568, 967
BseBI	CCWGG	2 cut(s)	163, 266
BseDI	CCNNGG	6 cut(s)	81, 381, 396, 424, 999, 1020
BseLI	CCNNNNNNNGG	5 cut(s)	82, 312, 387, 699, 1021
BseMI	GCAATG	2 cut(s)	568, 967
BseMII	CTCAG	4 cut(s)	78, 204, 355, 528
BseNI	ACTGG	5 cut(s)	116, 392, 902, 932, 985
BseRI	GAGGAG	4 cut(s)	26, 167, 170, 325
BseXI	GCAGC	4 cut(s)	419, 441, 451, 545
BseYI	CCCAGC	1 cut(s)	444
BshFI	GGCC	4 cut(s)	161, 278, 326, 570
BshNI	GGYRCC	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	824
BsiHKAI	GWGCWC	2 cut(s)	102, 207
BsiSI	CCGG	4 cut(s)	94, 274, 374, 825
BslI	CCNNNNNNNGG	5 cut(s)	82, 312, 387, 699, 1021
BsmAI	GTCTC	1 cut(s)	511
BsmI	GAATGC	2 cut(s)	247, 719
BsnI	GGCC	4 cut(s)	161, 278, 326, 570
Bsp1286I	GDGCHC	2 cut(s)	102, 207
Bsp143I	GATC	6 cut(s)	171, 315, 414, 836, 847, 951
Bsp19I	CCATGG	1 cut(s)	999
BspACI	CCGC	3 cut(s)	76, 295, 435
BspANI	GGCC	4 cut(s)	161, 278, 326, 570
BspCNI	CTCAG	4 cut(s)	79, 205, 354, 527
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	3 cut(s)	167, 292, 922
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	3 cut(s)	323, 844, 855
BspQI	GCTCTTC	2 cut(s)	801, 962
BspT107I	GGYRCC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	297
BsrDI	GCAATG	2 cut(s)	568, 967
BsrFI	RCCGGY	1 cut(s)	824
BsrI	ACTGG	5 cut(s)	116, 392, 902, 932, 985
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	6 cut(s)	81, 381, 396, 424, 999, 1020
BssMI	GATC	6 cut(s)	171, 315, 414, 836, 847, 951
BssSI	CACGAG	2 cut(s)	307, 902
BssT1I	CCWWGG	4 cut(s)	396, 424, 999, 1020
Bst2BI	CACGAG	2 cut(s)	307, 902
Bst2UI	CCWGG	2 cut(s)	163, 266
Bst4CI	ACNGT	3 cut(s)	460, 608, 657
Bst6I	CTCTTC	4 cut(s)	32, 44, 801, 962
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	4 cut(s)	87, 213, 341, 514
BstDSI	CCRYGG	2 cut(s)	381, 999
BstEII	GGTNACC	1 cut(s)	1051
BstHHI	GCGC	2 cut(s)	357, 960
BstKTI	GATC	6 cut(s)	174, 318, 417, 839, 850, 954
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	6 cut(s)	171, 315, 414, 836, 847, 951
BstMWI	GCNNNNNNNGC	7 cut(s)	106, 121, 401, 441, 567, 779, 1004
BstNI	CCWGG	2 cut(s)	163, 266
BstNSI	RCATGY	1 cut(s)	1063
BstPI	GGTNACC	1 cut(s)	1051
BstSCI	CCNGG	4 cut(s)	93, 161, 264, 273
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	419, 441, 451, 545
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	4 cut(s)	161, 278, 326, 570
BtgI	CCRYGG	2 cut(s)	381, 999
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	5 cut(s)	109, 465, 474, 618, 662
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	2 cut(s)	357, 960
Cfr10I	RCCGGY	1 cut(s)	824
Cfr13I	GGNCC	3 cut(s)	91, 222, 276
Csp6I	GTAC	2 cut(s)	271, 346
CspAI	ACCGGT	1 cut(s)	824
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	9 cut(s)	13, 319, 484, 613, 790, 851, 915, 1000, 1060
CviQI	GTAC	2 cut(s)	271, 346
DdeI	CTNAG	4 cut(s)	87, 213, 341, 514
DpnI	GATC	6 cut(s)	173, 317, 416, 838, 849, 953
DpnII	GATC	6 cut(s)	171, 315, 414, 836, 847, 951
Eam1104I	CTCTTC	4 cut(s)	32, 44, 801, 962
EarI	CTCTTC	4 cut(s)	32, 44, 801, 962
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	4 cut(s)	396, 424, 999, 1020
Eco147I	AGGCCT	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	91, 222
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	13, 782
Eco81I	CCTNAGG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	1051
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	222
EcoO65I	GGTNACC	1 cut(s)	1051
EcoRII	CCWGG	2 cut(s)	161, 264
EcoT14I	CCWWGG	4 cut(s)	396, 424, 999, 1020
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	4 cut(s)	396, 424, 999, 1020
FaeI	CATG	9 cut(s)	16, 322, 487, 616, 793, 854, 918, 1003, 1063
FalI	AAGNNNNNCTT	4 cut(s)	170, 202, 221, 253
FatI	CATG	9 cut(s)	12, 318, 483, 612, 789, 850, 914, 999, 1059
FauI	CCCGC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	430, 433, 465, 559
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	4 cut(s)	430, 433, 465, 559
FspBI	CTAG	2 cut(s)	336, 503
GlaI	GCGC	2 cut(s)	356, 959
GluI	GCNGC	4 cut(s)	430, 433, 465, 559
GsaI	CCCAGC	1 cut(s)	448
GsuI	CTGGAG	2 cut(s)	52, 409
HaeIII	GGCC	4 cut(s)	161, 278, 326, 570
HapII	CCGG	4 cut(s)	94, 274, 374, 825
HhaI	GCGC	2 cut(s)	357, 960
Hin1II	CATG	9 cut(s)	16, 322, 487, 616, 793, 854, 918, 1003, 1063
Hin6I	GCGC	2 cut(s)	355, 958
HinP1I	GCGC	2 cut(s)	355, 958
HincII	GTYRAC	3 cut(s)	6, 532, 649
HindII	GTYRAC	3 cut(s)	6, 532, 649
HindIII	AAGCTT	1 cut(s)	732
HinfI	GANTC	3 cut(s)	377, 623, 809
HpaII	CCGG	4 cut(s)	94, 274, 374, 825
HphI	GGTGA	4 cut(s)	43, 839, 944, 1045
Hpy166II	GTNNAC	7 cut(s)	6, 136, 385, 532, 649, 822, 892
Hpy188I	TCNGA	5 cut(s)	149, 301, 414, 517, 628
Hpy188III	TCNNGA	6 cut(s)	169, 319, 845, 904, 949, 1045
Hpy8I	GTNNAC	7 cut(s)	6, 136, 385, 532, 649, 822, 892
HpyAV	CCTTC	3 cut(s)	58, 316, 467
HpyCH4III	ACNGT	3 cut(s)	460, 608, 657
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	3 cut(s)	467, 561, 1031
HpyF10VI	GCNNNNNNNGC	7 cut(s)	106, 121, 401, 441, 567, 779, 1004
HpyF3I	CTNAG	4 cut(s)	87, 213, 341, 514
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	9 cut(s)	16, 322, 487, 616, 793, 854, 918, 1003, 1063
HspAI	GCGC	2 cut(s)	355, 958
Kzo9I	GATC	6 cut(s)	171, 315, 414, 836, 847, 951
LguI	GCTCTTC	2 cut(s)	801, 962
LmnI	GCTCC	2 cut(s)	97, 302
Lsp1109I	GCAGC	4 cut(s)	419, 441, 451, 545
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	336, 503
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	3 cut(s)	659, 688, 1051
MalI	GATC	6 cut(s)	173, 317, 416, 838, 849, 953
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	6 cut(s)	171, 315, 414, 836, 847, 951
MboII	GAAGA	7 cut(s)	19, 31, 166, 719, 751, 788, 979
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	102, 207
MmeI	TCCRAC	2 cut(s)	324, 651
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	2 cut(s)	482, 1058
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	4 cut(s)	94, 274, 374, 825
MspR9I	CCNGG	4 cut(s)	95, 163, 266, 275
Mva1269I	GAATGC	2 cut(s)	247, 719
MvaI	CCWGG	2 cut(s)	163, 266
MwoI	GCNNNNNNNGC	7 cut(s)	106, 121, 401, 441, 567, 779, 1004
NciI	CCSGG	2 cut(s)	95, 275
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	6 cut(s)	171, 315, 414, 836, 847, 951
NlaIII	CATG	9 cut(s)	16, 322, 487, 616, 793, 854, 918, 1003, 1063
NlaIV	GGNNCC	3 cut(s)	167, 292, 922
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	659, 1051
NspI	RCATGY	1 cut(s)	1063
PagI	TCATGA	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	570
PciSI	GCTCTTC	2 cut(s)	801, 962
PctI	GAATGC	2 cut(s)	247, 719
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	3 cut(s)	377, 623, 809
PfoI	TCCNGGA	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	824
PkrI	GCNGC	4 cut(s)	431, 434, 466, 560
PpuMI	RGGWCCY	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	161, 264
PspEI	GGTNACC	1 cut(s)	1051
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	2 cut(s)	161, 264
PspN4I	GGNNCC	3 cut(s)	167, 292, 922
PspPI	GGNCC	3 cut(s)	91, 222, 276
PspPPI	RGGWCCY	1 cut(s)	222
PsrI	GAACNNNNNNTAC	2 cut(s)	209, 241
PstI	CTGCAG	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	432
RsaI	GTAC	2 cut(s)	272, 347
RsaNI	GTAC	2 cut(s)	271, 346
RseI	CAYNNNNRTG	2 cut(s)	482, 1058
SacI	GAGCTC	1 cut(s)	102
SapI	GCTCTTC	2 cut(s)	801, 962
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	4 cut(s)	430, 433, 465, 559
Sau3AI	GATC	6 cut(s)	171, 315, 414, 836, 847, 951
Sau96I	GGNCC	3 cut(s)	91, 222, 276
ScrFI	CCNGG	4 cut(s)	95, 163, 266, 275
SduI	GDGCHC	2 cut(s)	102, 207
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	91, 222
SmiMI	CAYNNNNRTG	2 cut(s)	482, 1058
SpeI	ACTAGT	1 cut(s)	502
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	3 cut(s)	76, 295, 435
SspMI	CTAG	2 cut(s)	336, 503
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	4 cut(s)	93, 161, 264, 273
StyI	CCWWGG	4 cut(s)	396, 424, 999, 1020
TaaI	ACNGT	3 cut(s)	460, 608, 657
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	1 cut(s)	954
TfiI	GAWTC	3 cut(s)	377, 623, 809
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	5 cut(s)	116, 465, 474, 625, 662
TseFI	GTSAC	2 cut(s)	659, 1051
TseI	GCWGC	4 cut(s)	429, 432, 464, 558
Tsp45I	GTSAC	2 cut(s)	659, 1051
TspDTI	ATGAA	3 cut(s)	335, 583, 720
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	5 cut(s)	116, 465, 474, 625, 662
VpaK11BI	GGWCC	2 cut(s)	91, 222
XceI	RCATGY	1 cut(s)	1063
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	336, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.