FvH4_1g16530

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
9521619 .. 9524209
2591 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16530.t1

Sequence Viewer

Length: 1065 bp
ATGTCGACCTCCATGACCCTAACCCTCTTCACCCTCCTCTTCCTCTCCTTCACCCTCTCTCACGCCTCCGCCCTCCGCACCGATGCCGAGGTCCGGGAGCTCTACCAGAACTGGCTCGTCAAGCACCAGAAAGTCTACAACGGCATCGGAGAGGAGGAGACCAGGTTCCAGATCTTCAAGGACAACTTGAAGTTCGTCGATGAACACAACGCTGAGAACAGGTCGTACAAGGTTGGCATGAACGCCTTCGCCGACTTGACCAACCAGGAGTACCGTGCTAGGTTTCTCGGAACCCGCCCTGACCCTAAGAGGAGGGTCATGAAGGCCAAGAACCCTAGCCTCAGGTACGTTGTCCTCCCCGACGACAAGTTGCCGGAATCCGTCGACTGGAGAGCGTTGGGGGCTGTTAATCCGATCAAAAACCAAGGCAGCTGCGGAAGTTGCTGGGCATTTTCAACTGTGGCTGCAGTGGAAGGCATTAACAAGATAGCCACAGGAGAACTAGTCTCTCTTTCAGAGCAAGAGCTTGTTGACTGTGACAGGAAGTACAACGCTGGCTGCAACGGAGGCCTTATGGACTATGCTTTTGAGTTCATCATCAAAAACGGTGGCATGGACACTGAATCAGACTACCCTTACAAAGCAGTCAACCAACAGTGTGACGCTTCTTTGGAGAACAACAAGGTTGTTTCCATTGATGGTTACGAAGATGTTCCAGCTTTCAACGAGGAGGCTTTGAAGAAAGCTGTAGCACATCAACCTGTAAGTGTTGCCATTGAAGCTGGTGGCGTTGCTCTTCAGCTCTATGACTCGGGTGTGTTTACCGGTGAATGTGGATCAGCACTTGATCATGGTGTGGTTGCTGTTGGTTATGGCACTGAGAATGGTGTGGACTACTGGCTGGTGAGGAACTCATGGGGAACCAACTGGGGTGAGGGTGGATATTTCAAGATCGAGCGCAATGTGAAGAGCACATATACTGGCAAGTGTGGTATTGCCATGGAGGCTTCTTACCCGACCAAGGATAGTGCACAGAACCCAATCCAGATGGTCACCAGCATGTGA

Protein Analysis

355

Amino Acids

39.16

Weight (kDa)

5.15

Isoelectric Point (pI)

25.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 35 - 91 1.4e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 124 - 340 3.9e-86 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011728)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 5, 135, 384
AciI CCGC 4 cut(s) 69, 76, 295, 435
AclWI GGATC 1 cut(s) 844
AcuI CTGAAG 1 cut(s) 782
AfaI GTAC 4 cut(s) 227, 272, 347, 548
AfiI CCNNNNNNNGG 3 cut(s) 93, 387, 1021
AgeI ACCGGT 1 cut(s) 824
AgsI TTSAA 7 cut(s) 178, 190, 456, 724, 739, 779, 949
AhlI ACTAGT 1 cut(s) 502
AjnI CCWGG 2 cut(s) 161, 264
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 7 cut(s) 100, 432, 526, 719, 746, 782, 802
AluI AGCT 7 cut(s) 100, 432, 526, 719, 746, 782, 802
Alw21I GWGCWC 3 cut(s) 102, 974, 1033
Alw26I GTCTC 2 cut(s) 152, 511
Alw44I GTGCAC 1 cut(s) 1029
AlwI GGATC 1 cut(s) 844
Ama87I CYCGRG 1 cut(s) 811
AoxI GGCC 2 cut(s) 324, 568
ApaLI GTGCAC 1 cut(s) 1029
ApeKI GCWGC 4 cut(s) 429, 432, 464, 558
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AsiGI ACCGGT 1 cut(s) 824
Asp700I GAANNNNTTC 2 cut(s) 245, 711
AspLEI GCGC 1 cut(s) 960
AspS9I GGNCC 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 6 cut(s) 22, 43, 839, 916, 944, 1045
AvaI CYCGRG 1 cut(s) 811
AvaII GGWCC 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 1033
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 3 cut(s) 102, 974, 1033
BbvI GCAGC 4 cut(s) 419, 441, 451, 545
BccI CCATC 2 cut(s) 692, 1042
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 2 cut(s) 163, 266
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 152, 511
BcuI ACTAGT 1 cut(s) 502
BfaI CTAG 3 cut(s) 279, 336, 503
BfmI CTRYAG 2 cut(s) 465, 747
BglI GCCNNNNNGGC 1 cut(s) 1004
BglII AGATCT 1 cut(s) 171
BisI GCNGC 4 cut(s) 430, 433, 465, 559
BlsI GCNGC 4 cut(s) 431, 434, 466, 560
Bme1390I CCNGG 3 cut(s) 95, 163, 266
Bme18I GGWCC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 811
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 3 cut(s) 167, 292, 922
BmrFI CCNGG 3 cut(s) 95, 163, 266
BmrI ACTGGG 1 cut(s) 937
BmsI GCATC 2 cut(s) 73, 153
BmuI ACTGGG 1 cut(s) 937
BpmI CTGGAG 1 cut(s) 409
BpuMI CCSGG 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 87, 424, 999, 1020
BsaWI WCCGGW 1 cut(s) 824
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 489, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 387, 1021
Bse118I RCCGGY 1 cut(s) 824
Bse1I ACTGG 5 cut(s) 116, 392, 902, 932, 985
Bse21I CCTNAGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 967
BseBI CCWGG 2 cut(s) 163, 266
BseDI CCNNGG 4 cut(s) 87, 424, 999, 1020
BseLI CCNNNNNNNGG 3 cut(s) 93, 387, 1021
BseMI GCAATG 1 cut(s) 967
BseMII CTCAG 3 cut(s) 204, 355, 870
BseNI ACTGG 5 cut(s) 116, 392, 902, 932, 985
BseRI GAGGAG 5 cut(s) 26, 167, 170, 325, 743
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 4 cut(s) 419, 441, 451, 545
BseYI CCCAGC 1 cut(s) 444
BshFI GGCC 2 cut(s) 326, 570
BshTI ACCGGT 1 cut(s) 824
BsiHKAI GWGCWC 3 cut(s) 102, 974, 1033
BsiHKCI CYCGRG 1 cut(s) 811
BsiSI CCGG 3 cut(s) 94, 374, 825
BslI CCNNNNNNNGG 3 cut(s) 93, 387, 1021
BsmAI GTCTC 2 cut(s) 152, 511
BsnI GGCC 2 cut(s) 326, 570
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 811
Bsp1286I GDGCHC 3 cut(s) 102, 974, 1033
Bsp143I GATC 5 cut(s) 171, 414, 836, 847, 951
Bsp19I CCATGG 1 cut(s) 999
BspACI CCGC 4 cut(s) 69, 76, 295, 435
BspANI GGCC 2 cut(s) 326, 570
BspCNI CTCAG 3 cut(s) 205, 354, 871
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 3 cut(s) 167, 292, 922
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 1 cut(s) 844
BspQI GCTCTTC 2 cut(s) 801, 962
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 967
BsrFI RCCGGY 1 cut(s) 824
BsrI ACTGG 5 cut(s) 116, 392, 902, 932, 985
BssAI RCCGGY 1 cut(s) 824
BssECI CCNNGG 4 cut(s) 87, 424, 999, 1020
BssMI GATC 5 cut(s) 171, 414, 836, 847, 951
BssT1I CCWWGG 3 cut(s) 424, 999, 1020
Bst2UI CCWGG 2 cut(s) 163, 266
Bst4CI ACNGT 5 cut(s) 275, 460, 536, 608, 657
Bst6I CTCTTC 4 cut(s) 32, 44, 801, 962
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 4 cut(s) 213, 306, 341, 879
BstDSI CCRYGG 1 cut(s) 999
BstEII GGTNACC 1 cut(s) 1051
BstHHI GCGC 1 cut(s) 960
BstKTI GATC 5 cut(s) 174, 417, 839, 850, 954
BstMAI GTCTC 2 cut(s) 152, 511
BstMBI GATC 5 cut(s) 171, 414, 836, 847, 951
BstMWI GCNNNNNNNGC 6 cut(s) 121, 401, 441, 567, 779, 1004
BstNI CCWGG 2 cut(s) 163, 266
BstNSI RCATGY 1 cut(s) 1063
BstPI GGTNACC 1 cut(s) 1051
BstSCI CCNGG 3 cut(s) 93, 161, 264
BstSFI CTRYAG 2 cut(s) 465, 747
BstSLI GKGCMC 1 cut(s) 1033
BstV1I GCAGC 4 cut(s) 419, 441, 451, 545
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 2 cut(s) 326, 570
BtgI CCRYGG 1 cut(s) 999
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 4 cut(s) 474, 618, 662, 876
Cac8I GCNNGC 1 cut(s) 556
CciI TCATGA 1 cut(s) 318
CfoI GCGC 1 cut(s) 960
Cfr10I RCCGGY 1 cut(s) 824
Cfr13I GGNCC 1 cut(s) 91
CseI GACGC 1 cut(s) 671
CsiI ACCWGGT 1 cut(s) 161
Csp6I GTAC 4 cut(s) 226, 271, 346, 547
CspAI ACCGGT 1 cut(s) 824
CspCI CAANNNNNGTGG 2 cut(s) 589, 624
CviAII CATG 8 cut(s) 13, 238, 319, 613, 851, 915, 1000, 1060
CviQI GTAC 4 cut(s) 226, 271, 346, 547
DdeI CTNAG 4 cut(s) 213, 306, 341, 879
DpnI GATC 5 cut(s) 173, 416, 838, 849, 953
DpnII GATC 5 cut(s) 171, 414, 836, 847, 951
Eam1104I CTCTTC 4 cut(s) 32, 44, 801, 962
EarI CTCTTC 4 cut(s) 32, 44, 801, 962
EciI GGCGGA 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 3 cut(s) 424, 999, 1020
Eco147I AGGCCT 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 782
Eco81I CCTNAGG 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 811
Eco91I GGTNACC 1 cut(s) 1051
EcoICRI GAGCTC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 1051
EcoRII CCWGG 2 cut(s) 161, 264
EcoT14I CCWWGG 3 cut(s) 424, 999, 1020
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 3 cut(s) 424, 999, 1020
FaeI CATG 8 cut(s) 16, 241, 322, 616, 854, 918, 1003, 1063
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 8 cut(s) 12, 237, 318, 612, 850, 914, 999, 1059
FauI CCCGC 1 cut(s) 302
FbaI TGATCA 1 cut(s) 847
FblI GTMKAC 3 cut(s) 5, 135, 384
Fnu4HI GCNGC 4 cut(s) 430, 433, 465, 559
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 4 cut(s) 430, 433, 465, 559
FspBI CTAG 3 cut(s) 279, 336, 503
GlaI GCGC 1 cut(s) 959
GluI GCNGC 4 cut(s) 430, 433, 465, 559
GsaI CCCAGC 1 cut(s) 448
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 2 cut(s) 326, 570
HapII CCGG 3 cut(s) 94, 374, 825
HgaI GACGC 1 cut(s) 671
HhaI GCGC 1 cut(s) 960
Hin1II CATG 8 cut(s) 16, 241, 322, 616, 854, 918, 1003, 1063
Hin6I GCGC 1 cut(s) 958
HinP1I GCGC 1 cut(s) 958
HincII GTYRAC 4 cut(s) 6, 385, 532, 649
HindII GTYRAC 4 cut(s) 6, 385, 532, 649
HinfI GANTC 3 cut(s) 377, 623, 809
HpaII CCGG 3 cut(s) 94, 374, 825
HphI GGTGA 6 cut(s) 22, 43, 839, 916, 944, 1045
Hpy166II GTNNAC 8 cut(s) 6, 136, 385, 532, 649, 822, 892, 1031
Hpy188I TCNGA 5 cut(s) 149, 290, 414, 517, 628
Hpy188III TCNNGA 4 cut(s) 169, 319, 949, 1045
Hpy8I GTNNAC 8 cut(s) 6, 136, 385, 532, 649, 822, 892, 1031
Hpy99I CGWCG 3 cut(s) 200, 365, 386
HpyAV CCTTC 4 cut(s) 58, 256, 316, 467
HpyCH4III ACNGT 5 cut(s) 275, 460, 536, 608, 657
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 3 cut(s) 467, 561, 1031
HpyF10VI GCNNNNNNNGC 6 cut(s) 121, 401, 441, 567, 779, 1004
HpyF3I CTNAG 4 cut(s) 213, 306, 341, 879
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 8 cut(s) 16, 241, 322, 616, 854, 918, 1003, 1063
HspAI GCGC 1 cut(s) 958
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 5 cut(s) 171, 414, 836, 847, 951
LguI GCTCTTC 2 cut(s) 801, 962
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 4 cut(s) 419, 441, 451, 545
LweI GCATC 2 cut(s) 73, 153
MabI ACCWGGT 1 cut(s) 161
MaeI CTAG 3 cut(s) 279, 336, 503
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 4 cut(s) 536, 659, 701, 1051
MalI GATC 5 cut(s) 173, 416, 838, 849, 953
MboI GATC 5 cut(s) 171, 414, 836, 847, 951
MboII GAAGA 7 cut(s) 19, 31, 166, 719, 751, 788, 979
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 3 cut(s) 102, 974, 1033
MlyI GAGTC 1 cut(s) 803
MroXI GAANNNNTTC 2 cut(s) 245, 711
MseI TTAA 2 cut(s) 408, 480
MslI CAYNNNNRTG 1 cut(s) 1058
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 3 cut(s) 94, 374, 825
MspR9I CCNGG 3 cut(s) 95, 163, 266
MvaI CCWGG 2 cut(s) 163, 266
MwoI GCNNNNNNNGC 6 cut(s) 121, 401, 441, 567, 779, 1004
NciI CCSGG 1 cut(s) 95
NcoI CCATGG 1 cut(s) 999
NdeII GATC 5 cut(s) 171, 414, 836, 847, 951
NlaIII CATG 8 cut(s) 16, 241, 322, 616, 854, 918, 1003, 1063
NlaIV GGNNCC 3 cut(s) 167, 292, 922
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 3 cut(s) 536, 659, 1051
NspI RCATGY 1 cut(s) 1063
PagI TCATGA 1 cut(s) 318
PceI AGGCCT 1 cut(s) 570
PciSI GCTCTTC 2 cut(s) 801, 962
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdmI GAANNNNTTC 2 cut(s) 245, 711
PfeI GAWTC 2 cut(s) 377, 623
PfoI TCCNGGA 1 cut(s) 93
PinAI ACCGGT 1 cut(s) 824
PkrI GCNGC 4 cut(s) 431, 434, 466, 560
PleI GAGTC 1 cut(s) 803
PpsI GAGTC 1 cut(s) 803
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 161, 264
PspEI GGTNACC 1 cut(s) 1051
PspFI CCCAGC 1 cut(s) 444
PspGI CCWGG 2 cut(s) 161, 264
PspN4I GGNNCC 3 cut(s) 167, 292, 922
PspPI GGNCC 1 cut(s) 91
PsrI GAACNNNNNNTAC 2 cut(s) 209, 241
PstI CTGCAG 1 cut(s) 469
PsuI RGATCY 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 432
RsaI GTAC 4 cut(s) 227, 272, 347, 548
RsaNI GTAC 4 cut(s) 226, 271, 346, 547
RseI CAYNNNNRTG 1 cut(s) 1058
SacI GAGCTC 1 cut(s) 102
SalI GTCGAC 2 cut(s) 4, 383
SapI GCTCTTC 2 cut(s) 801, 962
SaqAI TTAA 2 cut(s) 408, 480
SatI GCNGC 4 cut(s) 430, 433, 465, 559
Sau3AI GATC 5 cut(s) 171, 414, 836, 847, 951
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 3 cut(s) 95, 163, 266
SduI GDGCHC 3 cut(s) 102, 974, 1033
SexAI ACCWGGT 1 cut(s) 161
SfaNI GCATC 2 cut(s) 73, 153
SfcI CTRYAG 2 cut(s) 465, 747
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 1058
SpeI ACTAGT 1 cut(s) 502
SseBI AGGCCT 1 cut(s) 570
SsiI CCGC 4 cut(s) 69, 76, 295, 435
SspMI CTAG 3 cut(s) 279, 336, 503
SstI GAGCTC 1 cut(s) 102
StuI AGGCCT 1 cut(s) 570
StyD4I CCNGG 3 cut(s) 93, 161, 264
StyI CCWWGG 3 cut(s) 424, 999, 1020
TaaI ACNGT 5 cut(s) 275, 460, 536, 608, 657
TaiI ACGT 1 cut(s) 351
TaqI TCGA 4 cut(s) 5, 198, 384, 954
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 2 cut(s) 377, 623
Tru1I TTAA 2 cut(s) 408, 480
Tru9I TTAA 2 cut(s) 408, 480
TscAI CASTG 4 cut(s) 474, 625, 662, 883
TseFI GTSAC 3 cut(s) 536, 659, 1051
TseI GCWGC 4 cut(s) 429, 432, 464, 558
Tsp45I GTSAC 3 cut(s) 536, 659, 1051
TspDTI ATGAA 4 cut(s) 216, 254, 335, 583
TspGWI ACGGA 2 cut(s) 370, 579
TspRI CASTG 4 cut(s) 474, 625, 662, 883
VneI GTGCAC 1 cut(s) 1029
VpaK11BI GGWCC 1 cut(s) 91
XceI RCATGY 1 cut(s) 1063
XmiI GTMKAC 3 cut(s) 5, 135, 384
XmnI GAANNNNTTC 2 cut(s) 245, 711
XspI CTAG 3 cut(s) 279, 336, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.