MD02G1177700.v1.1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
15710142 .. 15713299
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1177700.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGGCATCAACCGTGTCTCTCGCCATGTTCACCATCCTCTTCCTCTCCTTCACCCTCTCACAGGCCTCCCCGATTGTCGGCTCTCGGAGCGAGGCCGACGTCAGAGCCATCTACCAAGAGTGGCTCGTGAAGCACCAGAAAACATACAACGGCATCGGGGAGGACGAGAGGAGGTTCGAGATCTTCAAGGACAACTTGAAGTTCATCGACGAGCATAACGCACTGGACCGTCCGTACAAGGTCGGTCTGAATGCTTTCGCTGACCTGACCAACCAGGAGTACCGTGCCAAGTTTTTGGGCACCAGGAGTGACCCTAAGCGCAGGGTCATGAAGGCCAAGAACCCAAGCCTGAGGTACGCTTTTCGCGCCGGCGAGACGTTGCCGGAATCTGTGGATTGGAGAGTCAAGGGCGCCGTCAATCCCATCAAAAATCAAGGAAGTTGCGGGAGTTGCTGGGCTTTTTCAACAGTGGCAGCAGTGGAGGGCATAAACCAAATAGTGACCGGAGAATTGGTGTCTCTCTCAGAGCAAGAGCTCGTCGACTGTGACACGTCCTACAACGCCGGATGCAATGGCGGTCTCATGGACTACGCCTTCGAGTTCATTATCCTAAACGGCGGCATTGACACTGAATCCGACTACCCTTACAAAGCATATGACCAAAAATGCAACGTTGCCCTGGAGAAAAATACGGTTGTTAGCATTGACGGGTACGAAGATGTTCCGTCCTACGACGAGAACGCATTGAAGAAAGCAGTTGCACACCAACCCGTTAGCGTGGCCATTGAAGCCGGCGGCTTGGCCTTACAACTCTACCAGTCGGGTGTTTTCACTGGTGAGTGCGGATCAGCATTGGACCACGGTGTCGTTGCCGTCGGGTATGGCACTGAAAACGGCACAGACTATTGGTTGGTGAGGAACTCGTGGGGCACCAACTGGGGAGAAAGCGGATATTTTAAGATAGAGAGAAATGTTGCAAGCACGTACACAGGCAAGTGTGGCATTGCAATAGAGGCTTCTTACCCAACAAAGAAGGACCAAAAATACCCATCAAGCTCTTTCTCTGCCGAGCAAGACATCAAGATGGTCACAAGTGCTTGA

Protein Analysis

367

Amino Acids

40.29

Weight (kDa)

5.09

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 94 8.2e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 127 - 343 9.6e-86 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011728)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 863
AatII GACGTC 1 cut(s) 102
AccB1I GGYRCC 3 cut(s) 299, 410, 929
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 366
AciI CCGC 6 cut(s) 444, 576, 618, 795, 843, 948
AclI AACGTT 1 cut(s) 672
AclWI GGATC 1 cut(s) 853
AcoI YGGCCR 1 cut(s) 780
AcyI GRCGYC 2 cut(s) 99, 411
AfaI GTAC 5 cut(s) 236, 281, 356, 713, 986
AfiI CCNNNNNNNGG 2 cut(s) 61, 77
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 5 cut(s) 187, 199, 465, 748, 788
AjiI CACGTC 1 cut(s) 552
AjnI CCWGG 3 cut(s) 273, 302, 678
AluBI AGCT 2 cut(s) 535, 1056
AluI AGCT 2 cut(s) 535, 1056
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 4 cut(s) 21, 368, 522, 584
AlwI GGATC 1 cut(s) 853
AoxI GGCC 5 cut(s) 63, 93, 333, 780, 801
ApeKI GCWGC 1 cut(s) 473
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
Asp700I GAANNNNTTC 2 cut(s) 254, 720
AspLEI GCGC 3 cut(s) 321, 368, 413
AspS9I GGNCC 3 cut(s) 226, 856, 1036
AsuHPI GGTGA 4 cut(s) 22, 43, 848, 925
AvaII GGWCC 3 cut(s) 226, 856, 1036
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 2 cut(s) 302, 932
BalI TGGCCA 1 cut(s) 782
BanI GGYRCC 3 cut(s) 299, 410, 929
BanII GRGCYC 1 cut(s) 537
BauI CACGAG 2 cut(s) 125, 922
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 485
BccI CCATC 5 cut(s) 41, 116, 431, 1057, 1078
BceAI ACGGC 5 cut(s) 166, 398, 631, 857, 910
BciT130I CCWGG 3 cut(s) 275, 304, 680
BcoDI GTCTC 4 cut(s) 21, 368, 522, 584
BfoI RGCGCY 1 cut(s) 414
BglII AGATCT 1 cut(s) 180
BisI GCNGC 3 cut(s) 474, 619, 796
BlsI GCNGC 3 cut(s) 475, 620, 797
Bme1390I CCNGG 3 cut(s) 275, 304, 680
Bme18I GGWCC 3 cut(s) 226, 856, 1036
BmgBI CACGTC 1 cut(s) 552
BmgT120I GGNCC 3 cut(s) 226, 856, 1036
BmiI GGNNCC 3 cut(s) 301, 412, 931
BmrFI CCNGG 3 cut(s) 275, 304, 680
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 3 cut(s) 14, 162, 557
BmuI ACTGGG 1 cut(s) 946
BpmI CTGGAG 1 cut(s) 701
Bpu10I CCTNAGC 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 984
BsaHI GRCGYC 2 cut(s) 99, 411
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 678, 859
BsaWI WCCGGW 1 cut(s) 503
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 77
Bse118I RCCGGY 2 cut(s) 368, 791
Bse1I ACTGG 4 cut(s) 228, 817, 838, 941
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 2 cut(s) 577, 1002
BseBI CCWGG 3 cut(s) 275, 304, 680
BseDI CCNNGG 2 cut(s) 678, 859
BseGI GGATG 2 cut(s) 33, 572
BseLI CCNNNNNNNGG 2 cut(s) 61, 77
BseMI GCAATG 2 cut(s) 577, 1002
BseMII CTCAG 2 cut(s) 341, 537
BseNI ACTGG 4 cut(s) 228, 817, 838, 941
BseRI GAGGAG 1 cut(s) 184
BseSI GKGCMC 2 cut(s) 302, 932
BseXI GCAGC 1 cut(s) 485
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 5 cut(s) 65, 95, 335, 782, 803
BshNI GGYRCC 3 cut(s) 299, 410, 929
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 5 cut(s) 369, 383, 504, 564, 792
BslI CCNNNNNNNGG 2 cut(s) 61, 77
BsmAI GTCTC 4 cut(s) 21, 368, 522, 584
BsmBI CGTCTC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 5 cut(s) 65, 95, 335, 782, 803
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 3 cut(s) 302, 537, 932
Bsp143I GATC 2 cut(s) 180, 845
BspACI CCGC 6 cut(s) 444, 576, 618, 795, 843, 948
BspANI GGCC 5 cut(s) 65, 95, 335, 782, 803
BspCNI CTCAG 2 cut(s) 342, 536
BspFNI CGCG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 3 cut(s) 301, 412, 931
BspPI GGATC 1 cut(s) 853
BspT107I GGYRCC 3 cut(s) 299, 410, 929
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 577, 1002
BsrFI RCCGGY 2 cut(s) 368, 791
BsrI ACTGG 4 cut(s) 228, 817, 838, 941
BssAI RCCGGY 2 cut(s) 368, 791
BssECI CCNNGG 2 cut(s) 678, 859
BssMI GATC 2 cut(s) 180, 845
BssNI GRCGYC 2 cut(s) 99, 411
BssSI CACGAG 2 cut(s) 125, 922
Bst2BI CACGAG 2 cut(s) 125, 922
Bst2UI CCWGG 3 cut(s) 275, 304, 680
Bst4CI ACNGT 7 cut(s) 13, 230, 284, 469, 545, 694, 863
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 2 cut(s) 99, 411
BstBAI YACGTR 1 cut(s) 984
BstC8I GCNNGC 3 cut(s) 370, 793, 979
BstDEI CTNAG 3 cut(s) 315, 350, 523
BstDSI CCRYGG 1 cut(s) 859
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 33, 572
BstFNI CGCG 1 cut(s) 366
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 3 cut(s) 321, 368, 413
BstKTI GATC 2 cut(s) 183, 848
BstMAI GTCTC 4 cut(s) 21, 368, 522, 584
BstMBI GATC 2 cut(s) 180, 845
BstMWI GCNNNNNNNGC 7 cut(s) 87, 130, 365, 450, 788, 999, 1013
BstNI CCWGG 3 cut(s) 275, 304, 680
BstSCI CCNGG 3 cut(s) 273, 302, 678
BstSLI GKGCMC 2 cut(s) 302, 932
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 1 cut(s) 180
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 5 cut(s) 65, 95, 335, 782, 803
BtgI CCRYGG 1 cut(s) 859
BtrI CACGTC 1 cut(s) 552
BtsCI GGATG 2 cut(s) 33, 572
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 6 cut(s) 221, 474, 483, 627, 831, 885
Cac8I GCNNGC 3 cut(s) 370, 793, 979
CciI TCATGA 1 cut(s) 327
CfoI GCGC 3 cut(s) 321, 368, 413
Cfr10I RCCGGY 2 cut(s) 368, 791
Cfr13I GGNCC 3 cut(s) 226, 856, 1036
Csp6I GTAC 5 cut(s) 235, 280, 355, 712, 985
CviAII CATG 3 cut(s) 25, 328, 583
CviQI GTAC 5 cut(s) 235, 280, 355, 712, 985
DdeI CTNAG 3 cut(s) 315, 350, 523
DinI GGCGCC 1 cut(s) 412
DpnI GATC 2 cut(s) 182, 847
DpnII GATC 2 cut(s) 180, 845
DrdI GACNNNNNNGTC 1 cut(s) 863
DseDI GACNNNNNNGTC 1 cut(s) 863
EaeI YGGCCR 1 cut(s) 780
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 535
Eco147I AGGCCT 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 3 cut(s) 226, 856, 1036
Eco53kI GAGCTC 1 cut(s) 535
Eco81I CCTNAGG 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 535
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoRII CCWGG 3 cut(s) 273, 302, 678
EcoT38I GRGCYC 1 cut(s) 537
EgeI GGCGCC 1 cut(s) 412
EheI GGCGCC 1 cut(s) 412
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 3 cut(s) 28, 331, 586
FaiI YATR 9 cut(s) 26, 145, 216, 329, 488, 584, 655, 657, 882
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 3 cut(s) 24, 327, 582
FauI CCCGC 1 cut(s) 437
FauNDI CATATG 1 cut(s) 655
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 3 cut(s) 474, 619, 796
FokI GGATG 2 cut(s) 20, 579
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 3 cut(s) 474, 619, 796
GlaI GCGC 3 cut(s) 320, 367, 412
GluI GCNGC 3 cut(s) 474, 619, 796
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 701
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 5 cut(s) 65, 95, 335, 782, 803
HapII CCGG 5 cut(s) 369, 383, 504, 564, 792
HhaI GCGC 3 cut(s) 321, 368, 413
Hin1I GRCGYC 2 cut(s) 99, 411
Hin1II CATG 3 cut(s) 28, 331, 586
Hin6I GCGC 3 cut(s) 319, 366, 411
HinP1I GCGC 3 cut(s) 319, 366, 411
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 3 cut(s) 386, 402, 632
HpaII CCGG 5 cut(s) 369, 383, 504, 564, 792
HphI GGTGA 4 cut(s) 22, 43, 848, 925
Hpy166II GTNNAC 3 cut(s) 30, 541, 987
Hpy188I TCNGA 5 cut(s) 87, 104, 249, 526, 637
Hpy188III TCNNGA 4 cut(s) 127, 178, 328, 1081
Hpy8I GTNNAC 3 cut(s) 30, 541, 987
Hpy99I CGWCG 5 cut(s) 101, 212, 542, 737, 878
HpyAV CCTTC 4 cut(s) 58, 325, 604, 1027
HpyCH4III ACNGT 7 cut(s) 13, 230, 284, 469, 545, 694, 863
HpyCH4IV ACGT 5 cut(s) 99, 377, 551, 672, 983
HpyCH4V TGCA 5 cut(s) 570, 669, 761, 977, 1007
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 130, 365, 450, 788, 999, 1013
HpyF3I CTNAG 3 cut(s) 315, 350, 523
HpySE526I ACGT 5 cut(s) 99, 377, 551, 672, 983
Hsp92I GRCGYC 2 cut(s) 99, 411
Hsp92II CATG 3 cut(s) 28, 331, 586
HspAI GCGC 3 cut(s) 319, 366, 411
KasI GGCGCC 1 cut(s) 410
KroI GCCGGC 2 cut(s) 368, 791
KroNI GCCGGC 2 cut(s) 370, 793
Kzo9I GATC 2 cut(s) 180, 845
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 1 cut(s) 485
LweI GCATC 3 cut(s) 14, 162, 557
MaeII ACGT 5 cut(s) 99, 377, 551, 672, 983
MaeIII GTNAC 4 cut(s) 308, 499, 545, 1087
MalI GATC 2 cut(s) 182, 847
MboI GATC 2 cut(s) 180, 845
MboII GAAGA 4 cut(s) 31, 175, 728, 760
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 3 cut(s) 302, 537, 932
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 1 cut(s) 509
MluNI TGGCCA 1 cut(s) 782
Mly113I GGCGCC 1 cut(s) 411
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 660
Mox20I TGGCCA 1 cut(s) 782
MreI CGCCGGCG 1 cut(s) 368
MroNI GCCGGC 2 cut(s) 368, 791
MroXI GAANNNNTTC 2 cut(s) 254, 720
MscI TGGCCA 1 cut(s) 782
MseI TTAA 1 cut(s) 957
MslI CAYNNNNRTG 1 cut(s) 1082
Msp20I TGGCCA 1 cut(s) 782
MspI CCGG 5 cut(s) 369, 383, 504, 564, 792
MspR9I CCNGG 3 cut(s) 275, 304, 680
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 3 cut(s) 275, 304, 680
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 7 cut(s) 87, 130, 365, 450, 788, 999, 1013
NaeI GCCGGC 2 cut(s) 370, 793
NarI GGCGCC 1 cut(s) 411
NdeI CATATG 1 cut(s) 655
NdeII GATC 2 cut(s) 180, 845
NgoMIV GCCGGC 2 cut(s) 368, 791
NlaIII CATG 3 cut(s) 28, 331, 586
NlaIV GGNNCC 3 cut(s) 301, 412, 931
NmeAIII GCCGAG 1 cut(s) 1093
NmuCI GTSAC 4 cut(s) 308, 499, 545, 1087
PagI TCATGA 1 cut(s) 327
PceI AGGCCT 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 1 cut(s) 256
PdiI GCCGGC 2 cut(s) 370, 793
PdmI GAANNNNTTC 2 cut(s) 254, 720
PfeI GAWTC 2 cut(s) 386, 632
PkrI GCNGC 3 cut(s) 475, 620, 797
PleI GAGTC 1 cut(s) 410
PluTI GGCGCC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 984
Psp124BI GAGCTC 1 cut(s) 537
Psp1406I AACGTT 1 cut(s) 672
Psp6I CCWGG 3 cut(s) 273, 302, 678
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 3 cut(s) 273, 302, 678
PspN4I GGNNCC 3 cut(s) 301, 412, 931
PspPI GGNCC 3 cut(s) 226, 856, 1036
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 5 cut(s) 236, 281, 356, 713, 986
RsaNI GTAC 5 cut(s) 235, 280, 355, 712, 985
RseI CAYNNNNRTG 1 cut(s) 1082
SacI GAGCTC 1 cut(s) 537
SalI GTCGAC 1 cut(s) 539
SaqAI TTAA 1 cut(s) 957
SatI GCNGC 3 cut(s) 474, 619, 796
Sau3AI GATC 2 cut(s) 180, 845
Sau96I GGNCC 3 cut(s) 226, 856, 1036
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 3 cut(s) 275, 304, 680
SduI GDGCHC 3 cut(s) 302, 537, 932
SfaNI GCATC 3 cut(s) 14, 162, 557
SfoI GGCGCC 1 cut(s) 412
SgrAI CRCCGGYG 1 cut(s) 368
SinI GGWCC 3 cut(s) 226, 856, 1036
SmiMI CAYNNNNRTG 1 cut(s) 1082
Sse9I AATT 1 cut(s) 509
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 6 cut(s) 444, 576, 618, 795, 843, 948
SspDI GGCGCC 1 cut(s) 410
SstI GAGCTC 1 cut(s) 537
StuI AGGCCT 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 273, 302, 678
TaaI ACNGT 7 cut(s) 13, 230, 284, 469, 545, 694, 863
TaiI ACGT 5 cut(s) 102, 380, 554, 675, 986
TaqI TCGA 4 cut(s) 177, 207, 540, 597
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 509
TauI GCSGC 2 cut(s) 621, 798
TfiI GAWTC 2 cut(s) 386, 632
Tru1I TTAA 1 cut(s) 957
Tru9I TTAA 1 cut(s) 957
TscAI CASTG 6 cut(s) 228, 474, 483, 634, 838, 892
TseFI GTSAC 4 cut(s) 308, 499, 545, 1087
TseI GCWGC 1 cut(s) 473
Tsp45I GTSAC 4 cut(s) 308, 499, 545, 1087
TspDTI ATGAA 3 cut(s) 193, 344, 592
TspGWI ACGGA 2 cut(s) 222, 714
TspRI CASTG 6 cut(s) 228, 474, 483, 634, 838, 892
VpaK11BI GGWCC 3 cut(s) 226, 856, 1036
XagI CCTNNNNNAGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 540
XmnI GAANNNNTTC 2 cut(s) 254, 720
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.