Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011728

Physical Location & Seq

Genomic Coordinates Reverse (-)

23341018 .. 23343510

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G230400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTCGTCAACCATGTCCCTAACCATCTTCACTCTCCTCCTCCTCTCCTTCACCCTTTCATCCTATGCCTCAGGCGTCGGCTCTCGAAGCGAGGCCGAGGTCAAACAAATCTACCAAGAATGGCTTGTGAAGCACCAGAAAACCTACAACGGGATTGGAGAGGAAGACAGGAGGTTCGAGATCTTCAAGGACAACTTGAGGTTCATCGATGAGCACAATTCCCAGGACCGTCCCTACAAGGTTGGCCTGAACGCTTTTGCTGACCTGACCAACCAAGAGTACCGTGCCAAGTTTCTGGGCACCAGAAGTGACCCTAAGCGTAGGGTCATGAAGGCCAAGAACTCTAGCCAAAGGTATGCCTTTCGTGTCGGTGAGGCGTTGCCTGAATCTGTGGATTGGAGGGTCAAGGGCGCCGTCAACCCCATCAAAAATCAAGGAAATTGCGGAAGTTGCTGGGCTTTTTCGACAGTGGCAGCAGTGGAAGGCGTAAACCAAATAGTCACAGGCGAATTGGTCTCCCTTTCAGAGCAAGAGCTTGTTGACTGCGACAGGTCGTACAACGCAGGCTGCAACGGAGGCCTCATGGACTATGCCTTTGAGTTCATCATCCAAAACGGTGGCATGGACACTGAAAAAGACTACCCTTACAAAGCATACGACCAACAATGTAACGTTGCTCTGGAGAACAATAAGGTCGTTAGCATCGACGGATACGAAGATGTTCCTGCTTACGATGAGAACGCTTTGAAGAAAGCCGTGGCACATCAGCCCATTAGCGTTGCTATTGAAGCTGGTGGCATGGCTCTACAACTCTACCAGTCGGGTGTGTTTACTGGTGAATGTGGGTCAGCTTTGGACCATGGTGTGGTTGCTGTTGGGTATGGCACGGAGAATGGAACAGACTATTGGCTTGTAAGGAACTCATGGGGCACCAATTGGGGTGAGAGTGGATATTTTAAGATAGAGAGAAACGTGGCTACCACATACACTGGCAAGTGTGGGATTGCAATGGAGGCTTCTTACCCAACAAAGAAGGACCAAAAGTACCCAACAAGCTCTTTCCTTGCTGAAGAAGACATCAAAATGGTCACAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

367

Amino Acids

40.63

Weight (kDa)

5.11

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19400 AT3G19400
fragaria_vesca	FvH4_1g16530
malus_domestica	MD02G1177700.v1.1 MD15G1287500.v1.1
prunus_persica	Prupe.6G230400_v2.0.a1 Prupe.6G230400_v2.0.a1
pyrus_communis	pycom02g14370 pycom15g25110
rosa_chinensis	RchiOBHm_Chr2g0106431
rosa_laevigata	RLG00000017497
rosa_multiflora	Rmu_sc0004015.1_g000003
rosa_roxburghii	Rroxscaffold_2G00137190
rosa_rugosa	Rorug02G0135300
rosa_samantha	Rh2AG186600 Rh2BG196900 Rh2CG191600 Rh2DG192700
rosa_wichuraiana	Rw2G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	299, 410, 929
AccB7I	CCANNNNNTGG	1 cut(s)	865
AciI	CCGC	1 cut(s)	444
AclI	AACGTT	1 cut(s)	672
AcuI	CTGAAG	1 cut(s)	1089
AcyI	GRCGYC	2 cut(s)	75, 411
AfaI	GTAC	3 cut(s)	281, 557, 1046
AfiI	CCNNNNNNNGG	2 cut(s)	150, 865
AgsI	TTSAA	3 cut(s)	187, 748, 788
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	889, 921
AluBI	AGCT	4 cut(s)	535, 791, 851, 1056
AluI	AGCT	4 cut(s)	535, 791, 851, 1056
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	520
AoxI	GGCC	4 cut(s)	93, 244, 333, 577
ApeKI	GCWGC	2 cut(s)	473, 567
ArsI	GACNNNNNNTTYG	4 cut(s)	158, 190, 578, 610
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	226, 856, 1036
AsuHPI	GGTGA	4 cut(s)	43, 383, 848, 953
AvaII	GGWCC	3 cut(s)	226, 856, 1036
AxyI	CCTNAGG	1 cut(s)	70
BaeGI	GKGCMC	2 cut(s)	302, 932
BanI	GGYRCC	3 cut(s)	299, 410, 929
BbsI	GAAGAC	2 cut(s)	171, 1080
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	485, 554
BccI	CCATC	2 cut(s)	32, 431
BceAI	ACGGC	2 cut(s)	398, 740
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	414
BfuI	GTATCC	1 cut(s)	704
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	474, 568
BlsI	GCNGC	2 cut(s)	475, 569
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	3 cut(s)	226, 856, 1036
BmgT120I	GGNCC	3 cut(s)	226, 856, 1036
BmiI	GGNNCC	3 cut(s)	301, 412, 931
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	711
BpiI	GAAGAC	2 cut(s)	171, 1080
BpmI	CTGGAG	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	207
BsaHI	GRCGYC	2 cut(s)	75, 411
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	4 cut(s)	96, 222, 756, 859
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 865
Bse1I	ACTGG	3 cut(s)	817, 838, 994
Bse21I	CCTNAGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	1014
BseBI	CCWGG	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	4 cut(s)	96, 222, 756, 859
BseGI	GGATG	2 cut(s)	59, 606
BseLI	CCNNNNNNNGG	2 cut(s)	150, 865
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	3 cut(s)	817, 838, 994
BseRI	GAGGAG	3 cut(s)	26, 29, 32
BseSI	GKGCMC	2 cut(s)	302, 932
BseXI	GCAGC	2 cut(s)	485, 554
BseYI	CCCAGC	1 cut(s)	453
BshFI	GGCC	4 cut(s)	95, 246, 335, 579
BshNI	GGYRCC	3 cut(s)	299, 410, 929
BshVI	ATCGAT	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	150, 865
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	4 cut(s)	95, 246, 335, 579
Bso31I	GGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	3 cut(s)	216, 302, 932
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	859
BspACI	CCGC	1 cut(s)	444
BspANI	GGCC	4 cut(s)	95, 246, 335, 579
BspCNI	CTCAG	1 cut(s)	83
BspDI	ATCGAT	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	301, 412, 931
BspT107I	GGYRCC	3 cut(s)	299, 410, 929
BspTNI	GGTCTC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	1014
BsrI	ACTGG	3 cut(s)	817, 838, 994
BssECI	CCNNGG	4 cut(s)	96, 222, 756, 859
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	75, 411
BssT1I	CCWWGG	1 cut(s)	859
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	4 cut(s)	230, 284, 469, 617
BstACI	GRCGYC	2 cut(s)	75, 411
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	2 cut(s)	70, 315
BstDSI	CCRYGG	2 cut(s)	756, 859
BstF5I	GGATG	2 cut(s)	59, 606
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 130, 450, 576, 788, 1013
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	2 cut(s)	302, 932
BstV1I	GCAGC	2 cut(s)	485, 554
BstV2I	GAAGAC	2 cut(s)	171, 1080
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	2 cut(s)	295, 617
BstYI	RGATCY	1 cut(s)	180
Bsu15I	ATCGAT	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	4 cut(s)	95, 246, 335, 579
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	756, 859
BtsCI	GGATG	2 cut(s)	59, 606
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	4 cut(s)	474, 483, 627, 987
Cac8I	GCNNGC	1 cut(s)	565
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	226, 856, 1036
ClaI	ATCGAT	1 cut(s)	207
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	3 cut(s)	280, 556, 1045
CviAII	CATG	7 cut(s)	13, 328, 583, 622, 799, 860, 924
CviQI	GTAC	3 cut(s)	280, 556, 1045
DdeI	CTNAG	2 cut(s)	70, 315
DinI	GGCGCC	1 cut(s)	412
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	859
Eco147I	AGGCCT	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	3 cut(s)	226, 856, 1036
Eco57I	CTGAAG	1 cut(s)	1089
Eco81I	CCTNAGG	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	859
EgeI	GGCGCC	1 cut(s)	412
EheI	GGCGCC	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	7 cut(s)	16, 331, 586, 625, 802, 863, 927
FalI	AAGNNNNNCTT	4 cut(s)	108, 140, 179, 211
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	7 cut(s)	12, 327, 582, 621, 798, 859, 923
Fnu4HI	GCNGC	2 cut(s)	474, 568
FokI	GGATG	2 cut(s)	46, 593
Fsp4HI	GCNGC	2 cut(s)	474, 568
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	2 cut(s)	474, 568
GsaI	CCCAGC	1 cut(s)	457
GsuI	CTGGAG	1 cut(s)	701
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	95, 246, 335, 579
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	413
Hin1I	GRCGYC	2 cut(s)	75, 411
Hin1II	CATG	7 cut(s)	16, 331, 586, 625, 802, 863, 927
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	3 cut(s)	9, 418, 541
HindII	GTYRAC	3 cut(s)	9, 418, 541
HinfI	GANTC	1 cut(s)	386
HphI	GGTGA	4 cut(s)	43, 383, 848, 953
Hpy166II	GTNNAC	5 cut(s)	9, 418, 490, 541, 831
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	4 cut(s)	84, 178, 328, 680
Hpy8I	GTNNAC	5 cut(s)	9, 418, 490, 541, 831
Hpy99I	CGWCG	2 cut(s)	80, 710
HpyAV	CCTTC	4 cut(s)	58, 325, 476, 1027
HpyCH4III	ACNGT	4 cut(s)	230, 284, 469, 617
HpyCH4IV	ACGT	2 cut(s)	672, 972
HpyCH4V	TGCA	2 cut(s)	570, 1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 130, 450, 576, 788, 1013
HpyF3I	CTNAG	2 cut(s)	70, 315
HpySE526I	ACGT	2 cut(s)	672, 972
Hsp92I	GRCGYC	2 cut(s)	75, 411
Hsp92II	CATG	7 cut(s)	16, 331, 586, 625, 802, 863, 927
HspAI	GCGC	1 cut(s)	411
KasI	GGCGCC	1 cut(s)	410
Kzo9I	GATC	1 cut(s)	180
Lsp1109I	GCAGC	2 cut(s)	485, 554
LweI	GCATC	1 cut(s)	711
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	672, 972
MaeIII	GTNAC	4 cut(s)	308, 499, 668, 1087
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	7 cut(s)	19, 175, 176, 728, 760, 1082, 1085
MfeI	CAATTG	1 cut(s)	934
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	3 cut(s)	216, 302, 932
MluCI	AATT	4 cut(s)	217, 439, 509, 934
Mly113I	GGCGCC	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	1 cut(s)	957
MslI	CAYNNNNRTG	1 cut(s)	1082
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	934
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	6 cut(s)	87, 130, 450, 576, 788, 1013
NarI	GGCGCC	1 cut(s)	411
NcoI	CCATGG	1 cut(s)	859
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	7 cut(s)	16, 331, 586, 625, 802, 863, 927
NlaIV	GGNNCC	3 cut(s)	301, 412, 931
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	3 cut(s)	308, 499, 1087
PagI	TCATGA	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	2 cut(s)	702, 711
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	865
PkrI	GCNGC	2 cut(s)	475, 569
PluTI	GGCGCC	1 cut(s)	414
Psp1406I	AACGTT	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	301, 412, 931
PspPI	GGNCC	3 cut(s)	226, 856, 1036
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	3 cut(s)	281, 557, 1046
RsaNI	GTAC	3 cut(s)	280, 556, 1045
RseI	CAYNNNNRTG	1 cut(s)	1082
SaqAI	TTAA	1 cut(s)	957
SatI	GCNGC	2 cut(s)	474, 568
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	3 cut(s)	226, 856, 1036
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	3 cut(s)	216, 302, 932
SfaNI	GCATC	1 cut(s)	711
SfoI	GGCGCC	1 cut(s)	412
SinI	GGWCC	3 cut(s)	226, 856, 1036
SmiMI	CAYNNNNRTG	1 cut(s)	1082
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	4 cut(s)	217, 439, 509, 934
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	1 cut(s)	444
SspDI	GGCGCC	1 cut(s)	410
SspMI	CTAG	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	4 cut(s)	230, 284, 469, 617
TaiI	ACGT	2 cut(s)	675, 975
TaqI	TCGA	5 cut(s)	85, 177, 207, 464, 705
TasI	AATT	4 cut(s)	217, 439, 509, 934
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	957
Tru9I	TTAA	1 cut(s)	957
TscAI	CASTG	4 cut(s)	474, 483, 634, 994
TseFI	GTSAC	3 cut(s)	308, 499, 1087
TseI	GCWGC	2 cut(s)	473, 567
Tsp45I	GTSAC	3 cut(s)	308, 499, 1087
TspDTI	ATGAA	4 cut(s)	48, 193, 344, 592
TspGWI	ACGGA	3 cut(s)	588, 723, 902
TspRI	CASTG	4 cut(s)	474, 483, 634, 994
Van91I	CCANNNNNTGG	1 cut(s)	865
VpaK11BI	GGWCC	3 cut(s)	226, 856, 1036
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.