AT3G19990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011357
Physical Location & Seq
Forward (+)
6965595 .. 6967321
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19990.1

Sequence Viewer

Length: 1278 bp
ATGGGTTCATCATCATCTCCATCCCCGAACGACGCCGTACTGGAATCAGCCCGACCTTTTCTCCGAGGAGAGCTTGAAAAGATCGACCCCAAACTCCCGTCGTTAATCGCCGTCCTCAAAAGCGTCGGTGCCGGCGAGTGTTGGCACAAACACGGAAGCTTCCTAGATCACTTAATCGATATCTACAAGATCCTCAAGCTATGGAAAGCTCCTGAATCCGTCTGTCTCTGTGGTCTATTCCACTCTGCTTACTCCAATTCCTATGTCAATTTAGCTATTTTCGATCCTTCCACTGGTCGTGACGTCGTCCGTGATCACGTCGGTGAAGCTGCCGAGTCGTTGATCCATCTCTTCTGCGTTGTACCGAGACAAACTCTGATTCACGATGAGCTTTTGTTTAAGTACTCTGATTGTGAGCTCGTTGAGCATCTTGATTGTTCTGAGGTTTCGTTGAGGAACGCAAAGGAGAAAGGGATTTTTGATGGAGATGAAGAGTGGAGGAAGAAGATTAATGCTTTGGTTCCTGAGAACGGTGTTGTTGTGAAGCATATCAAGACAGGTGAAGAAATCGTTGTTTCGAGGAGAGTTGTTGGTGTTTTCTTGTTAATGACAATGGCGGATTTTAGTGATCAGCTTTTTGGGTTCCAAGATGAGTTGTTCTGTAATCATGATGGGAGACTTGAGTTTAGAGGGAACAACGTGACTGCGTTGTGGCCTGGGAATGGGAAGCCTGGACTGTGGATGAATTCTAATTCGAGAATGGGAGCGATTTATAGTTTGATTGTGAGAGAAGAGGAGATTTTGATGGAAGAGAGGAGAAGGGCTTTTGGTTCTGGGTTTGAAGTGAGGAAGGAAAGAGATGAGGATATAGATCTTGTCGTGCCTCCAGTTTTCAGCTTCTGCACCAAGGTATTGGATGCAAAAGAGCAGATAGAAGCAAGGGAGATGTACTGGGAAGTTGTGAGCAGTGACACAAGCAAAGAAGGGTACTTGGAGAGAGCAGAGGAGAGATTGTTGGGTTGTATTGAGAAGAACCCATTTGTGGGAGAGCCACATGTGTTGTTGAGTCAAGTGTACTTGGGAAAGAAGAGATTCAAAGAAGCAGAGAGAGAGGCAGAGAAAGGGCTTCTTCTGCTCTTGCAATGGGGAAGTCCTTGGGACAAGAGAATGTCATGGGAAGGTTGGATTGCTTGGGTTAGGGTTCTTCTCATGAAGTCACAGGATCAATCTTGGCCTGATGTTTCTTGGGGTATCTTGAACTTGGGTCTCGTGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

48.41

Weight (kDa)

5.4

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6817 PF20680 38 - 123 1.4e-29 Domain of unknown function (DUF6817)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 1 cut(s) 617
AclWI GGATC 4 cut(s) 184, 278, 337, 1230
AcsI RAATTY 1 cut(s) 745
AcyI GRCGYC 2 cut(s) 33, 303
AfaI GTAC 6 cut(s) 39, 363, 404, 950, 989, 1076
AfiI CCNNNNNNNGG 5 cut(s) 293, 530, 722, 1042, 1043
AflIII ACRYGT 1 cut(s) 1054
AgsI TTSAA 4 cut(s) 77, 842, 1096, 1258
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 2 cut(s) 715, 730
AleI CACNNNNGTG 1 cut(s) 321
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 4 cut(s) 230, 361, 670, 1271
AlwI GGATC 4 cut(s) 184, 278, 337, 1230
AlwNI CAGNNNCTG 1 cut(s) 900
AoxI GGCC 2 cut(s) 713, 1232
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 745
AseI ATTAAT 1 cut(s) 510
Asp700I GAANNNNTTC 1 cut(s) 1091
AspLEI GCGC 1 cut(s) 1275
AsuHPI GGTGA 2 cut(s) 335, 572
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 420
BauI CACGAG 1 cut(s) 1268
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 316
BccI CCATC 5 cut(s) 28, 354, 476, 665, 799
BceAI ACGGC 2 cut(s) 20, 95
BciT130I CCWGG 2 cut(s) 717, 732
BclI TGATCA 2 cut(s) 313, 628
BcoDI GTCTC 4 cut(s) 230, 361, 670, 1271
BfaI CTAG 1 cut(s) 164
BglII AGATCT 1 cut(s) 871
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 2 cut(s) 717, 732
BmgBI CACGTC 1 cut(s) 319
BmiI GGNNCC 3 cut(s) 130, 522, 644
BmrFI CCNGG 2 cut(s) 717, 732
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 2 cut(s) 436, 907
BmuI ACTGGG 1 cut(s) 961
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpmI CTGGAG 1 cut(s) 870
BpuEI CTTGAG 2 cut(s) 179, 701
Bsa29I ATCGAT 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 870
BsaHI GRCGYC 2 cut(s) 33, 303
BsaI GGTCTC 1 cut(s) 1271
BsaJI CCNNGG 4 cut(s) 64, 716, 906, 1154
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 998, 1028
Bsc4I CCNNNNNNNGG 5 cut(s) 293, 530, 722, 1042, 1043
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 4 cut(s) 45, 298, 887, 956
Bse3DI GCAATG 1 cut(s) 1148
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 2 cut(s) 717, 732
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 4 cut(s) 64, 716, 906, 1154
BseGI GGATG 3 cut(s) 20, 747, 922
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 5 cut(s) 293, 530, 722, 1042, 1043
BseMI GCAATG 1 cut(s) 1148
BseMII CTCAG 2 cut(s) 432, 516
BseNI ACTGG 4 cut(s) 45, 298, 887, 956
BseRI GAGGAG 5 cut(s) 81, 595, 809, 829, 1019
BseXI GCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 886
BshFI GGCC 2 cut(s) 715, 1234
BshNI GGYRCC 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 1172
BslI CCNNNNNNNGG 5 cut(s) 293, 530, 722, 1042, 1043
BsmAI GTCTC 4 cut(s) 230, 361, 670, 1271
BsmFI GGGAC 1 cut(s) 1172
BsnI GGCC 2 cut(s) 715, 1234
Bso31I GGTCTC 1 cut(s) 1271
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 9 cut(s) 81, 166, 189, 283, 313, 342, 628, 871, 1222
BspACI CCGC 1 cut(s) 617
BspANI GGCC 2 cut(s) 715, 1234
BspCNI CTCAG 2 cut(s) 433, 517
BspDI ATCGAT 1 cut(s) 177
BspHI TCATGA 2 cut(s) 667, 1209
BspLI GGNNCC 3 cut(s) 130, 522, 644
BspPI GGATC 4 cut(s) 184, 278, 337, 1230
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 1271
BsrDI GCAATG 1 cut(s) 1148
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 4 cut(s) 45, 298, 887, 956
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 4 cut(s) 64, 716, 906, 1154
BssMI GATC 9 cut(s) 81, 166, 189, 283, 313, 342, 628, 871, 1222
BssNI GRCGYC 2 cut(s) 33, 303
BssSI CACGAG 1 cut(s) 1268
BssT1I CCWWGG 2 cut(s) 906, 1154
Bst2BI CACGAG 1 cut(s) 1268
Bst2UI CCWGG 2 cut(s) 717, 732
Bst4CI ACNGT 2 cut(s) 533, 738
Bst6I CTCTTC 5 cut(s) 356, 486, 786, 804, 1082
BstACI GRCGYC 2 cut(s) 33, 303
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 441, 525
BstF5I GGATG 3 cut(s) 20, 747, 922
BstHHI GCGC 1 cut(s) 1275
BstKTI GATC 9 cut(s) 84, 169, 192, 286, 316, 345, 631, 874, 1225
BstMAI GTCTC 4 cut(s) 230, 361, 670, 1271
BstMBI GATC 9 cut(s) 81, 166, 189, 283, 313, 342, 628, 871, 1222
BstMWI GCNNNNNNNGC 2 cut(s) 424, 1132
BstNI CCWGG 2 cut(s) 717, 732
BstNSI RCATGY 1 cut(s) 1058
BstSCI CCNGG 2 cut(s) 715, 730
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 189, 871
BstXI CCANNNNNNTGG 1 cut(s) 913
BstYI RGATCY 2 cut(s) 189, 871
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 2 cut(s) 715, 1234
BsuTUI ATCGAT 1 cut(s) 177
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 3 cut(s) 20, 747, 922
BtsI GCAGTG 1 cut(s) 973
BtsIMutI CAGTG 2 cut(s) 291, 973
Cac8I GCNNGC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 900
CciI TCATGA 2 cut(s) 667, 1209
CfoI GCGC 1 cut(s) 1275
Cfr10I RCCGGY 1 cut(s) 131
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 2 cut(s) 41, 112
Csp6I GTAC 6 cut(s) 38, 362, 403, 949, 988, 1075
CspCI CAANNNNNGTGG 2 cut(s) 1041, 1076
CviAII CATG 4 cut(s) 668, 1055, 1173, 1210
CviQI GTAC 6 cut(s) 38, 362, 403, 949, 988, 1075
DdeI CTNAG 2 cut(s) 441, 525
DpnI GATC 9 cut(s) 83, 168, 191, 285, 315, 344, 630, 873, 1224
DpnII GATC 9 cut(s) 81, 166, 189, 283, 313, 342, 628, 871, 1222
Eam1104I CTCTTC 5 cut(s) 356, 486, 786, 804, 1082
EarI CTCTTC 5 cut(s) 356, 486, 786, 804, 1082
EciI GGCGGA 1 cut(s) 632
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 2 cut(s) 906, 1154
Eco24I GRGCYC 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 1271
Eco32I GATATC 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 418
EcoICRI GAGCTC 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 2 cut(s) 715, 730
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 906, 1154
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 906, 1154
FaeI CATG 4 cut(s) 671, 1058, 1176, 1213
FaiI YATR 9 cut(s) 202, 264, 549, 669, 774, 869, 1056, 1174, 1211
FalI AAGNNNNNCTT 2 cut(s) 1113, 1145
FaqI GGGAC 1 cut(s) 1172
FatI CATG 4 cut(s) 667, 1054, 1172, 1209
FbaI TGATCA 2 cut(s) 313, 628
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 3 cut(s) 7, 754, 929
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 1274
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 870
HaeIII GGCC 2 cut(s) 715, 1234
HapII CCGG 1 cut(s) 132
HgaI GACGC 2 cut(s) 41, 112
HhaI GCGC 1 cut(s) 1275
Hin1I GRCGYC 2 cut(s) 33, 303
Hin1II CATG 4 cut(s) 671, 1058, 1176, 1213
Hin6I GCGC 1 cut(s) 1273
HinP1I GCGC 1 cut(s) 1273
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 6 cut(s) 44, 215, 335, 379, 1066, 1092
HpaII CCGG 1 cut(s) 132
HphI GGTGA 2 cut(s) 335, 572
Hpy166II GTNNAC 1 cut(s) 1075
Hpy188I TCNGA 4 cut(s) 65, 378, 409, 442
Hpy8I GTNNAC 1 cut(s) 1075
Hpy99I CGWCG 5 cut(s) 35, 103, 128, 308, 323
HpyAV CCTTC 5 cut(s) 297, 813, 844, 977, 1172
HpyCH4III ACNGT 2 cut(s) 533, 738
HpyCH4IV ACGT 3 cut(s) 303, 318, 699
HpyCH4V TGCA 3 cut(s) 903, 920, 1141
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 1132
HpyF3I CTNAG 2 cut(s) 441, 525
HpySE526I ACGT 3 cut(s) 303, 318, 699
Hsp92I GRCGYC 2 cut(s) 33, 303
Hsp92II CATG 4 cut(s) 671, 1058, 1176, 1213
HspAI GCGC 1 cut(s) 1273
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Ksp22I TGATCA 2 cut(s) 313, 628
Kzo9I GATC 9 cut(s) 81, 166, 189, 283, 313, 342, 628, 871, 1222
LmnI GCTCC 2 cut(s) 214, 764
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 2 cut(s) 436, 907
MaeI CTAG 1 cut(s) 164
MaeII ACGT 3 cut(s) 303, 318, 699
MaeIII GTNAC 4 cut(s) 299, 700, 968, 1215
MalI GATC 9 cut(s) 83, 168, 191, 285, 315, 344, 630, 873, 1224
MboI GATC 9 cut(s) 81, 166, 189, 283, 313, 342, 628, 871, 1222
MflI RGATCY 2 cut(s) 189, 871
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 4 cut(s) 256, 268, 745, 751
MlyI GAGTC 2 cut(s) 344, 1075
MmeI TCCRAC 1 cut(s) 1163
MroNI GCCGGC 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 1091
MseI TTAA 5 cut(s) 104, 173, 399, 510, 605
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 717, 732
MvaI CCWGG 2 cut(s) 717, 732
MwoI GCNNNNNNNGC 2 cut(s) 424, 1132
NaeI GCCGGC 1 cut(s) 133
NdeII GATC 9 cut(s) 81, 166, 189, 283, 313, 342, 628, 871, 1222
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 4 cut(s) 671, 1058, 1176, 1213
NlaIV GGNNCC 3 cut(s) 130, 522, 644
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 4 cut(s) 299, 700, 968, 1215
NspI RCATGY 1 cut(s) 1058
OliI CACNNNNGTG 1 cut(s) 321
PagI TCATGA 2 cut(s) 667, 1209
PciI ACATGT 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 1091
PfeI GAWTC 4 cut(s) 44, 215, 379, 1092
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 2 cut(s) 343, 1074
PpsI GAGTC 2 cut(s) 343, 1074
PscI ACATGT 1 cut(s) 1054
PshBI ATTAAT 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 715, 730
PspGI CCWGG 2 cut(s) 715, 730
PspN4I GGNNCC 3 cut(s) 130, 522, 644
PstNI CAGNNNCTG 1 cut(s) 900
PsuI RGATCY 2 cut(s) 189, 871
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 6 cut(s) 39, 363, 404, 950, 989, 1076
RsaNI GTAC 6 cut(s) 38, 362, 403, 949, 988, 1075
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 5 cut(s) 104, 173, 399, 510, 605
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 9 cut(s) 81, 166, 189, 283, 313, 342, 628, 871, 1222
ScaI AGTACT 1 cut(s) 404
SchI GAGTC 2 cut(s) 344, 1075
ScrFI CCNGG 2 cut(s) 717, 732
SduI GDGCHC 1 cut(s) 420
SfaNI GCATC 2 cut(s) 436, 907
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 194, 680
SmoI CTYRAG 2 cut(s) 194, 680
Sse9I AATT 4 cut(s) 256, 268, 745, 751
SsiI CCGC 1 cut(s) 617
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 715, 730
StyI CCWWGG 2 cut(s) 906, 1154
TaaI ACNGT 2 cut(s) 533, 738
TaiI ACGT 3 cut(s) 306, 321, 702
TaqI TCGA 5 cut(s) 84, 177, 282, 578, 755
TasI AATT 4 cut(s) 256, 268, 745, 751
TatI WGTACW 3 cut(s) 402, 948, 1074
TfiI GAWTC 4 cut(s) 44, 215, 379, 1092
Tru1I TTAA 5 cut(s) 104, 173, 399, 510, 605
Tru9I TTAA 5 cut(s) 104, 173, 399, 510, 605
TscAI CASTG 2 cut(s) 298, 973
TseFI GTSAC 4 cut(s) 299, 700, 968, 1215
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 4 cut(s) 299, 700, 968, 1215
TspDTI ATGAA 3 cut(s) 504, 758, 1226
TspGWI ACGGA 3 cut(s) 168, 208, 299
TspRI CASTG 2 cut(s) 298, 973
Tth111I GACNNNGTC 1 cut(s) 305
VspI ATTAAT 1 cut(s) 510
XapI RAATTY 1 cut(s) 745
XceI RCATGY 1 cut(s) 1058
XmnI GAANNNNTTC 1 cut(s) 1091
XspI CTAG 1 cut(s) 164
ZraI GACGTC 1 cut(s) 304
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.