Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8311385.1

Orthogroup ID

OG0011357

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 915

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8311385.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

catgtcggggaggctgccgagcgcttgatccacttgttctgcatcgtcccaaggcagccactcatccacgatgaccttctcttccactacaccgacgacgagctccgcgaccatctcaagcaatccgaagcggctgtttctggagattctggcaactgcaactggaggaagaaagtgcagagtctggttcctgctgatgggatcagggtgaagcacataaagacgggcgaagatgtgttggtttcgaggaggatcgtcgcgacgtttgtgatgatgaccatggcagatttcagcgaccaactgtttggtttccaggacgcgctgtttgacaacggagacgggcggctcgagttcactgggaacaagtatggagctctgtggcctggcgatggcaagccggggctctggatgaactccatttcaaggatggctgcactctacacactcctcgtcagggaggaacaagtgtttattcgggagagaggtgacgccaaccttaacatttctcgagatgaaaatctccagctcgtggtgccgccagtgtttgacaactgcaccagggttttggatgctggggagcaattagctgccagggacctctattgggaagctgtctgtgattctgattccgacgattctgcttcattgctcaagagttgcattgagaaaaacccgttcatcggagagccgcatgtggtgttgggtcaggtttatttgacgcagggaaagtatgaggaggctgagagagaagctgagacagggctgaggctgctgctggaatgggcgagttcttgggacaagaggatgtcttggcaaggatggattgcttgggccagggttctgctgatgaaggcccgagaaagatcatggcctcaaacttcctggggcattctcaacttgggcctcgtcgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

34.52

Weight (kDa)

5.06

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19990 AT3G19990
fragaria_vesca	FvH4_4g37300
malus_domestica	MD13G1001600.v1.1 MD16G1004500.v1.1
prunus_persica	Prupe.1G350900_v2.0.a1 Prupe.1G350900_v2.0.a1 Prupe.1G351100_v2.0.a1
pyrus_communis	pycom13g00130
rosa_chinensis	RchiOBHm_Chr4g0447121
rosa_laevigata	RLG00000005603
rosa_multiflora	Rmu_co8311385.1_g000001 Rmu_sc0010825.1_g000007
rosa_roxburghii	Rroxscaffold_5G00387460
rosa_rugosa	Rorug04G0378400
rosa_samantha	Rh4AG439500 Rh4BG448600 Rh4CG465600 Rh4DG447000
rosa_wichuraiana	Rw4G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccII	CGCG	3 cut(s)	108, 260, 320
AciI	CCGC	5 cut(s)	106, 131, 343, 536, 689
AclWI	GGATC	3 cut(s)	22, 209, 260
AcyI	GRCGYC	1 cut(s)	489
AfeI	AGCGCT	1 cut(s)	23
AfiI	CCNNNNNNNGG	7 cut(s)	197, 389, 423, 454, 529, 604, 680
AgsI	TTSAA	1 cut(s)	423
AjnI	CCWGG	6 cut(s)	312, 382, 557, 590, 833, 881
AluBI	AGCT	6 cut(s)	103, 374, 526, 587, 611, 752
AluI	AGCT	6 cut(s)	103, 374, 526, 587, 611, 752
Alw21I	GWGCWC	2 cut(s)	105, 376
Alw26I	GTCTC	2 cut(s)	330, 749
AlwI	GGATC	3 cut(s)	22, 209, 260
AlwNI	CAGNNNCTG	1 cut(s)	184
Ama87I	CYCGRG	3 cut(s)	347, 507, 855
Aor51HI	AGCGCT	1 cut(s)	23
AoxI	GGCC	5 cut(s)	380, 831, 852, 869, 901
ApeKI	GCWGC	6 cut(s)	14, 55, 431, 587, 769, 772
ArsI	GACNNNNNNTTYG	4 cut(s)	287, 308, 319, 340
AspLEI	GCGC	2 cut(s)	24, 322
AspS9I	GGNCC	4 cut(s)	595, 831, 853, 901
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	2 cut(s)	220, 497
AvaI	CYCGRG	3 cut(s)	347, 507, 855
AvaII	GGWCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	3 cut(s)	105, 376, 405
BauI	CACGAG	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	105, 376
BbvCI	CCTCAGC	1 cut(s)	764
BbvI	GCAGC	5 cut(s)	67, 418, 574, 756, 759
BccI	CCATC	5 cut(s)	120, 191, 383, 421, 813
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	6 cut(s)	314, 384, 559, 592, 835, 883
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	330, 749
BfoI	RGCGCY	1 cut(s)	25
Bme1390I	CCNGG	7 cut(s)	314, 384, 399, 559, 592, 835, 883
Bme18I	GGWCC	1 cut(s)	595
BmeT110I	CYCGRG	3 cut(s)	347, 507, 855
BmgT120I	GGNCC	4 cut(s)	595, 831, 853, 901
BmiI	GGNNCC	3 cut(s)	189, 534, 596
BmrFI	CCNGG	7 cut(s)	314, 384, 399, 559, 592, 835, 883
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	51, 559
BmuI	ACTGGG	1 cut(s)	366
BpmI	CTGGAG	3 cut(s)	162, 184, 506
Bpu10I	CCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	2 cut(s)	101, 635
BpuMI	CCSGG	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	489
BsaJI	CCNNGG	7 cut(s)	50, 279, 398, 558, 591, 834, 882
Bsc4I	CCNNNNNNNGG	7 cut(s)	197, 389, 423, 454, 529, 604, 680
Bse1I	ACTGG	3 cut(s)	167, 361, 539
Bse3DI	GCAATG	1 cut(s)	644
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	6 cut(s)	314, 384, 559, 592, 835, 883
BseDI	CCNNGG	7 cut(s)	50, 279, 398, 558, 591, 834, 882
BseGI	GGATG	6 cut(s)	63, 414, 432, 574, 810, 824
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	7 cut(s)	197, 389, 423, 454, 529, 604, 680
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	3 cut(s)	732, 744, 755
BseNI	ACTGG	3 cut(s)	167, 361, 539
BseRI	GAGGAG	3 cut(s)	262, 437, 749
BseXI	GCAGC	5 cut(s)	67, 418, 574, 756, 759
BseYI	CCCAGC	1 cut(s)	572
BsgI	GTGCAG	3 cut(s)	197, 417, 538
Bsh1236I	CGCG	3 cut(s)	108, 260, 320
BshFI	GGCC	5 cut(s)	382, 833, 854, 871, 903
BshNI	GGYRCC	1 cut(s)	532
BsiHKAI	GWGCWC	2 cut(s)	105, 376
BsiHKCI	CYCGRG	3 cut(s)	347, 507, 855
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	3 cut(s)	32, 608, 809
BslI	CCNNNNNNNGG	7 cut(s)	197, 389, 423, 454, 529, 604, 680
BsmAI	GTCTC	2 cut(s)	330, 749
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	3 cut(s)	32, 608, 809
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	5 cut(s)	382, 833, 854, 871, 903
BsoBI	CYCGRG	3 cut(s)	347, 507, 855
Bsp1286I	GDGCHC	3 cut(s)	105, 376, 405
Bsp143I	GATC	4 cut(s)	27, 201, 252, 863
Bsp19I	CCATGG	1 cut(s)	279
Bsp68I	TCGCGA	1 cut(s)	260
BspACI	CCGC	5 cut(s)	106, 131, 343, 536, 689
BspANI	GGCC	5 cut(s)	382, 833, 854, 871, 903
BspCNI	CTCAG	3 cut(s)	733, 745, 756
BspFNI	CGCG	3 cut(s)	108, 260, 320
BspLI	GGNNCC	3 cut(s)	189, 534, 596
BspPI	GGATC	3 cut(s)	22, 209, 260
BspT107I	GGYRCC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	644
BsrI	ACTGG	3 cut(s)	167, 361, 539
BssECI	CCNNGG	7 cut(s)	50, 279, 398, 558, 591, 834, 882
BssMI	GATC	4 cut(s)	27, 201, 252, 863
BssNI	GRCGYC	1 cut(s)	489
BssSI	CACGAG	1 cut(s)	527
BssT1I	CCWWGG	2 cut(s)	50, 279
Bst2BI	CACGAG	1 cut(s)	527
Bst2UI	CCWGG	6 cut(s)	314, 384, 559, 592, 835, 883
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	741, 753, 764
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	6 cut(s)	63, 414, 432, 574, 810, 824
BstFNI	CGCG	3 cut(s)	108, 260, 320
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 322
BstKTI	GATC	4 cut(s)	30, 204, 255, 866
BstMAI	GTCTC	2 cut(s)	330, 749
BstMBI	GATC	4 cut(s)	27, 201, 252, 863
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 769
BstNI	CCWGG	6 cut(s)	314, 384, 559, 592, 835, 883
BstNSI	RCATGY	1 cut(s)	695
BstSCI	CCNGG	7 cut(s)	312, 382, 397, 557, 590, 833, 881
BstUI	CGCG	3 cut(s)	108, 260, 320
BstV1I	GCAGC	5 cut(s)	67, 418, 574, 756, 759
BstXI	CCANNNNNNTGG	2 cut(s)	305, 565
BsuRI	GGCC	5 cut(s)	382, 833, 854, 871, 903
BtgI	CCRYGG	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	6 cut(s)	63, 414, 432, 574, 810, 824
BtsIMutI	CAGTG	2 cut(s)	354, 546
BtuMI	TCGCGA	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	395
CaiI	CAGNNNCTG	1 cut(s)	184
CfoI	GCGC	2 cut(s)	24, 322
Cfr13I	GGNCC	4 cut(s)	595, 831, 853, 901
CseI	GACGC	3 cut(s)	326, 497, 727
CviAII	CATG	4 cut(s)	2, 280, 692, 867
DdeI	CTNAG	3 cut(s)	741, 753, 764
DpnI	GATC	4 cut(s)	29, 203, 254, 865
DpnII	GATC	4 cut(s)	27, 201, 252, 863
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Ecl136II	GAGCTC	2 cut(s)	103, 374
Eco130I	CCWWGG	2 cut(s)	50, 279
Eco24I	GRGCYC	3 cut(s)	105, 376, 405
Eco47I	GGWCC	1 cut(s)	595
Eco47III	AGCGCT	1 cut(s)	23
Eco53kI	GAGCTC	2 cut(s)	103, 374
Eco88I	CYCGRG	3 cut(s)	347, 507, 855
EcoICRI	GAGCTC	2 cut(s)	103, 374
EcoO109I	RGGNCCY	1 cut(s)	595
EcoRII	CCWGG	6 cut(s)	312, 382, 557, 590, 833, 881
EcoT14I	CCWWGG	2 cut(s)	50, 279
EcoT38I	GRGCYC	3 cut(s)	105, 376, 405
ErhI	CCWWGG	2 cut(s)	50, 279
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	3 cut(s)	283, 695, 870
FaiI	YATR	7 cut(s)	3, 218, 281, 369, 693, 732, 868
FaqI	GGGAC	3 cut(s)	32, 608, 809
FatI	CATG	3 cut(s)	279, 691, 866
FokI	GGATG	6 cut(s)	50, 421, 439, 581, 817, 831
FriOI	GRGCYC	3 cut(s)	105, 376, 405
GlaI	GCGC	2 cut(s)	23, 321
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	3 cut(s)	162, 184, 506
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	5 cut(s)	382, 833, 854, 871, 903
HapII	CCGG	1 cut(s)	398
HgaI	GACGC	3 cut(s)	326, 497, 727
HhaI	GCGC	2 cut(s)	24, 322
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	3 cut(s)	283, 695, 870
Hin6I	GCGC	2 cut(s)	22, 320
HinP1I	GCGC	2 cut(s)	22, 320
HinfI	GANTC	5 cut(s)	146, 181, 620, 626, 635
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	2 cut(s)	220, 497
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	4 cut(s)	127, 625, 631, 683
Hpy188III	TCNNGA	7 cut(s)	141, 259, 406, 476, 507, 509, 652
Hpy8I	GTNNAC	1 cut(s)	354
Hpy99I	CGWCG	6 cut(s)	98, 101, 260, 265, 635, 911
HpyAV	CCTTC	2 cut(s)	86, 844
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	6 cut(s)	42, 159, 178, 434, 555, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 769
HpyF3I	CTNAG	3 cut(s)	741, 753, 764
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	3 cut(s)	283, 695, 870
HspAI	GCGC	2 cut(s)	22, 320
Kzo9I	GATC	4 cut(s)	27, 201, 252, 863
LmnI	GCTCC	3 cut(s)	108, 371, 577
Lsp1109I	GCAGC	5 cut(s)	67, 418, 574, 756, 759
LweI	GCATC	2 cut(s)	51, 559
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	4 cut(s)	29, 203, 254, 865
MboI	GATC	4 cut(s)	27, 201, 252, 863
MboII	GAAGA	3 cut(s)	73, 181, 242
MhlI	GDGCHC	3 cut(s)	105, 376, 405
MluCI	AATT	1 cut(s)	581
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	654
MseI	TTAA	1 cut(s)	498
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	7 cut(s)	314, 384, 399, 559, 592, 835, 883
Mva1269I	GAATGC	1 cut(s)	888
MvaI	CCWGG	6 cut(s)	314, 384, 559, 592, 835, 883
MvnI	CGCG	3 cut(s)	108, 260, 320
MwoI	GCNNNNNNNGC	2 cut(s)	532, 769
NciI	CCSGG	1 cut(s)	399
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	4 cut(s)	27, 201, 252, 863
NlaIII	CATG	3 cut(s)	283, 695, 870
NlaIV	GGNNCC	3 cut(s)	189, 534, 596
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	485
NruI	TCGCGA	1 cut(s)	260
NspI	RCATGY	1 cut(s)	695
PaeR7I	CTCGAG	2 cut(s)	347, 507
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 345
PctI	GAATGC	1 cut(s)	888
PfeI	GAWTC	4 cut(s)	146, 620, 626, 635
PflMI	CCANNNNNTGG	1 cut(s)	529
PfoI	TCCNGGA	1 cut(s)	312
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	595
Psp124BI	GAGCTC	2 cut(s)	105, 376
Psp5II	RGGWCCY	1 cut(s)	595
Psp6I	CCWGG	6 cut(s)	312, 382, 557, 590, 833, 881
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	6 cut(s)	312, 382, 557, 590, 833, 881
PspN4I	GGNNCC	3 cut(s)	189, 534, 596
PspPI	GGNCC	4 cut(s)	595, 831, 853, 901
PspPPI	RGGWCCY	1 cut(s)	595
PspXI	VCTCGAGB	1 cut(s)	347
PstNI	CAGNNNCTG	1 cut(s)	184
RruI	TCGCGA	1 cut(s)	260
SacI	GAGCTC	2 cut(s)	105, 376
SaqAI	TTAA	1 cut(s)	498
Sau3AI	GATC	4 cut(s)	27, 201, 252, 863
Sau96I	GGNCC	4 cut(s)	595, 831, 853, 901
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	7 cut(s)	314, 384, 399, 559, 592, 835, 883
SduI	GDGCHC	3 cut(s)	105, 376, 405
SfaNI	GCATC	2 cut(s)	51, 559
Sfr274I	CTCGAG	2 cut(s)	347, 507
SinI	GGWCC	1 cut(s)	595
SlaI	CTCGAG	2 cut(s)	347, 507
SmlI	CTYRAG	4 cut(s)	116, 347, 507, 650
SmoI	CTYRAG	4 cut(s)	116, 347, 507, 650
Sse9I	AATT	1 cut(s)	581
SsiI	CCGC	5 cut(s)	106, 131, 343, 536, 689
SstI	GAGCTC	2 cut(s)	105, 376
StyD4I	CCNGG	7 cut(s)	312, 382, 397, 557, 590, 833, 881
StyI	CCWWGG	2 cut(s)	50, 279
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	4 cut(s)	245, 348, 508, 909
TasI	AATT	1 cut(s)	581
TauI	GCSGC	4 cut(s)	134, 346, 538, 691
TfiI	GAWTC	4 cut(s)	146, 620, 626, 635
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	361, 546
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	6 cut(s)	14, 55, 431, 587, 769, 772
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	5 cut(s)	425, 528, 633, 667, 863
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	361, 546
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	595
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XhoI	CTCGAG	2 cut(s)	347, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.