Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011357

Physical Location & Seq

Genomic Coordinates Reverse (-)

32667664 .. 32668380

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G351100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATGACAATAGCAGATTTCAGTGACCAACTTTTTGGTTTCCAGGACGAGCTGTTTGATAACATAGATGGCCGCCTTGAGTTTAAGGGCAACAACTTTGCAGCTCTGTGGCCGGGCGATGGCAAGCCGGGGCTTTGGATGAATTCCATATCAAGAATGGCTGCAATATACACTCTGATGGTGAGAGAGGAAGCGATTTTTGTTGAAGAGAGGAAAATTACTAGTGCTACTGCAACTGGAGACAAGTTGGACAAATCTAGAGATGAAGATATTGAGCTGGTGGTGCCACCAGTTTTCGACAAGTGCACAAGGGTTCTGGATGCCAAGGAGCAATTAGCTGCAAGGGACTTGTACTGGGAAGCTGTTTGTGGTATGTCGTCGTCGTCTTCTAAGAGAGAGATTGTTGATGATGGTAAAGGAGCTGATGATGAGGAAGCGACGGTGGTTCTGTTGAGGTCGTGTGTTGAGAGAAACCCTTTTATTGGGGAGCCACATGTGGTGTTGGCTCAGGTTTATTTGAGAAAAGCAAAGTTTGAGGAGGCAGAGAGAGAGGCAGAGAGAGGGCTGACTCTGATGTTGGAATGGGGGAGTGCTTGGGACAAGAGGATGTCTTGGGAAGGATGGATTGCTTGGGCAAGAGTGCTGCTCATGAAGGCAAGAGACAGATCATGGCCACAAACTTCCTGGGGCATCCTCAACTTGGGCCTTGTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

27.08

Weight (kDa)

4.84

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19990 AT3G19990
fragaria_vesca	FvH4_4g37300
malus_domestica	MD13G1001600.v1.1 MD16G1004500.v1.1
prunus_persica	Prupe.1G350900_v2.0.a1 Prupe.1G350900_v2.0.a1 Prupe.1G351100_v2.0.a1
pyrus_communis	pycom13g00130
rosa_chinensis	RchiOBHm_Chr4g0447121
rosa_laevigata	RLG00000005603
rosa_multiflora	Rmu_co8311385.1_g000001 Rmu_sc0010825.1_g000007
rosa_roxburghii	Rroxscaffold_5G00387460
rosa_rugosa	Rorug04G0378400
rosa_samantha	Rh4AG439500 Rh4BG448600 Rh4CG465600 Rh4DG447000
rosa_wichuraiana	Rw4G037600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AciI	CCGC	1 cut(s)	73
AcoI	YGGCCR	3 cut(s)	70, 110, 671
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	119, 482, 700
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	1 cut(s)	206
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	42, 683
AluBI	AGCT	6 cut(s)	52, 104, 277, 338, 362, 422
AluI	AGCT	6 cut(s)	52, 104, 277, 338, 362, 422
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	2 cut(s)	234, 654
Alw44I	GTGCAC	1 cut(s)	304
AoxI	GGCC	4 cut(s)	70, 110, 671, 703
ApaLI	GTGCAC	1 cut(s)	304
ApeKI	GCWGC	4 cut(s)	101, 161, 338, 643
ApoI	RAATTY	1 cut(s)	142
ArsI	GACNNNNNNTTYG	4 cut(s)	17, 38, 49, 70
AspS9I	GGNCC	1 cut(s)	703
AsuC2I	CCSGG	2 cut(s)	114, 129
AsuHPI	GGTGA	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	673
BanI	GGYRCC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	4 cut(s)	113, 148, 325, 630
BccI	CCATC	5 cut(s)	62, 113, 172, 404, 615
BciT130I	CCWGG	2 cut(s)	44, 685
BcnI	CCSGG	2 cut(s)	114, 129
BcoDI	GTCTC	2 cut(s)	234, 654
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	2 cut(s)	222, 258
BisI	GCNGC	5 cut(s)	73, 102, 162, 339, 644
BlsI	GCNGC	5 cut(s)	74, 103, 163, 340, 645
Bme1390I	CCNGG	4 cut(s)	44, 114, 129, 685
BmgT120I	GGNCC	1 cut(s)	703
BmiI	GGNNCC	2 cut(s)	285, 489
BmrFI	CCNGG	4 cut(s)	44, 114, 129, 685
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	310, 699
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	378
BplI	GAGNNNNNCTC	2 cut(s)	630, 662
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	114, 129
BsaJI	CCNNGG	3 cut(s)	128, 324, 684
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 482, 700
Bse1I	ACTGG	3 cut(s)	241, 290, 359
BseBI	CCWGG	2 cut(s)	44, 685
BseDI	CCNNGG	3 cut(s)	128, 324, 684
BseGI	GGATG	5 cut(s)	144, 325, 612, 626, 690
BseLI	CCNNNNNNNGG	3 cut(s)	119, 482, 700
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	3 cut(s)	241, 290, 359
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	4 cut(s)	113, 148, 325, 630
BshFI	GGCC	4 cut(s)	72, 112, 673, 705
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	113, 128
BslFI	GGGAC	2 cut(s)	359, 611
BslI	CCNNNNNNNGG	3 cut(s)	119, 482, 700
BsmAI	GTCTC	2 cut(s)	234, 654
BsmFI	GGGAC	2 cut(s)	359, 611
BsnI	GGCC	4 cut(s)	72, 112, 673, 705
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	665
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	4 cut(s)	72, 112, 673, 705
BspCNI	CTCAG	1 cut(s)	520
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	285, 489
BspT107I	GGYRCC	1 cut(s)	283
BsrI	ACTGG	3 cut(s)	241, 290, 359
BssECI	CCNNGG	3 cut(s)	128, 324, 684
BssMI	GATC	1 cut(s)	665
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	44, 685
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	390, 507
BstF5I	GGATG	5 cut(s)	144, 325, 612, 626, 690
BstKTI	GATC	1 cut(s)	668
BstMAI	GTCTC	2 cut(s)	234, 654
BstMBI	GATC	1 cut(s)	665
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	2 cut(s)	44, 685
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	4 cut(s)	42, 112, 127, 683
BstSLI	GKGCMC	1 cut(s)	308
BstV1I	GCAGC	4 cut(s)	113, 148, 325, 630
BstV2I	GAAGAC	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	35
BsuRI	GGCC	4 cut(s)	72, 112, 673, 705
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	5 cut(s)	144, 325, 612, 626, 690
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	125
CciI	TCATGA	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	703
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	3 cut(s)	494, 649, 669
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	390, 507
DpnI	GATC	1 cut(s)	667
DpnII	GATC	1 cut(s)	665
EaeI	YGGCCR	3 cut(s)	70, 110, 671
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	42, 683
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	3 cut(s)	497, 652, 672
FaiI	YATR	7 cut(s)	65, 149, 169, 374, 495, 650, 670
FaqI	GGGAC	2 cut(s)	359, 611
FatI	CATG	3 cut(s)	493, 648, 668
Fnu4HI	GCNGC	5 cut(s)	73, 102, 162, 339, 644
FokI	GGATG	5 cut(s)	151, 332, 619, 633, 677
Fsp4HI	GCNGC	5 cut(s)	73, 102, 162, 339, 644
FspBI	CTAG	2 cut(s)	222, 258
GluI	GCNGC	5 cut(s)	73, 102, 162, 339, 644
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	72, 112, 673, 705
HapII	CCGG	2 cut(s)	113, 128
Hin1II	CATG	3 cut(s)	497, 652, 672
HinfI	GANTC	1 cut(s)	568
HpaII	CCGG	2 cut(s)	113, 128
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	2 cut(s)	177, 573
Hpy188III	TCNNGA	4 cut(s)	153, 258, 317, 649
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	3 cut(s)	382, 385, 442
HpyAV	CCTTC	2 cut(s)	611, 646
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	5 cut(s)	101, 164, 233, 306, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	390, 507
Hsp92II	CATG	3 cut(s)	497, 652, 672
Kzo9I	GATC	1 cut(s)	665
LmnI	GCTCC	3 cut(s)	328, 419, 487
Lsp1109I	GCAGC	4 cut(s)	113, 148, 325, 630
LweI	GCATC	2 cut(s)	310, 699
MaeI	CTAG	2 cut(s)	222, 258
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	667
MboI	GATC	1 cut(s)	665
MboII	GAAGA	3 cut(s)	218, 278, 378
MhlI	GDGCHC	1 cut(s)	308
MlsI	TGGCCA	1 cut(s)	673
MluCI	AATT	3 cut(s)	142, 216, 332
MluNI	TGGCCA	1 cut(s)	673
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	2 cut(s)	228, 558
Mox20I	TGGCCA	1 cut(s)	673
MscI	TGGCCA	1 cut(s)	673
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	673
MspI	CCGG	2 cut(s)	113, 128
MspR9I	CCNGG	4 cut(s)	44, 114, 129, 685
MvaI	CCWGG	2 cut(s)	44, 685
MwoI	GCNNNNNNNGC	1 cut(s)	283
NciI	CCSGG	2 cut(s)	114, 129
NdeII	GATC	1 cut(s)	665
NlaIII	CATG	3 cut(s)	497, 652, 672
NlaIV	GGNNCC	2 cut(s)	285, 489
NmuCI	GTSAC	1 cut(s)	23
NspI	RCATGY	1 cut(s)	497
PagI	TCATGA	1 cut(s)	648
PciI	ACATGT	1 cut(s)	493
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	5 cut(s)	74, 103, 163, 340, 645
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PscI	ACATGT	1 cut(s)	493
Psp6I	CCWGG	2 cut(s)	42, 683
PspGI	CCWGG	2 cut(s)	42, 683
PspN4I	GGNNCC	2 cut(s)	285, 489
PspPI	GGNCC	1 cut(s)	703
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	5 cut(s)	73, 102, 162, 339, 644
Sau3AI	GATC	1 cut(s)	665
Sau96I	GGNCC	1 cut(s)	703
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	4 cut(s)	44, 114, 129, 685
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	8 cut(s)	54, 106, 279, 340, 364, 424, 458, 513
SfaNI	GCATC	2 cut(s)	310, 699
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	3 cut(s)	142, 216, 332
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	2 cut(s)	222, 258
StyD4I	CCNGG	4 cut(s)	42, 112, 127, 683
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	297
TasI	AATT	3 cut(s)	142, 216, 332
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	4 cut(s)	101, 161, 338, 643
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	3 cut(s)	155, 279, 665
TspRI	CASTG	1 cut(s)	28
VneI	GTGCAC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	257
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	2 cut(s)	154, 681
XspI	CTAG	2 cut(s)	222, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.