Rroxscaffold_5G00387460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011357
Physical Location & Seq
Reverse (-)
66107208 .. 66108182
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00387460.1

Sequence Viewer

Length: 975 bp
ATGTTAACCTCGCTATATTCGACCCTTCCACCGGCCGCGACGTCGTTCGCGGCCATGTCGAGGGAGGCTGCCGAGCGCTTGATCCACCTGTTCTGCATCGTCCCAAGGCAGCCACTCATCCACGATGACCTTCTCTTCCACTACACCGACGACGAGCTCCGCGACCATCTCAAGCAATCCGAAGCGGCTGTTTCTGGAGCTGTTGCTGATAATTGCAGCTGGAGGAAGAAAGTGCAGAGTCTGGTTCCTGCTGATGGGATCAGAGTGAAGCACATAAAGACGGGCGAAGATGTGTTGGTTTCGAGGAGGATCGTCGCGACGTTTGTGATGATGACCATGGCAGATTTCAGCGACCAACTGTTTGGTTTCCAGGACGCGCTGTTTGACAACGGAGACGGGCGGCTCGAGTTCACTGGGAACAAGTATGGAGCTCTGTGGCCTGGCGATGGCAAGCCGGGGCTCTGGATGAACTCCATTTCAAGGATGGCTGCACTCTACACACTCCTCGTCAGGGAGGAACAAGTGTTTATTCGAGAGAGAGAGAGAGGTGATGCCAACCTTGACATTTCTCGAGATGAAAATATCGAGCTCGCGGTGCCGCCAGTGTTTGAGAACTGCACCAGGGTTTTGGATGCTGGGGAGCAATTAGCTGCCAGGGACCTCTATTGGGCAGCTGTTTGTGATTCTGATTCCGATTCTGCTTCACTGCTCAAGAGTTGCATTGAGAAAAACCCTTTCATCGGAGAGCCGCATGTGGTGTTGGGTCAGGTTTATTTGACGCAGGGAAAGTATGAGGAGGCTGAGAGAGAAGCTGAGACAGGGCTGAGGCTTCTGCTGGAGTGGGCAAGTTCTTGGGACAAGAGGATGTCTTGGCAAGGATGGATTGCTTGGGCCAGGGTTCTGCTGATGAGGGCCCAAGAAAGATCATGGCCTCAAACTTCCTGGGGCATTCTTAACTTGGGCCTCGTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

36.6

Weight (kDa)

5.13

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 595
AccII CGCG 6 cut(s) 38, 50, 162, 317, 377, 593
AciI CCGC 8 cut(s) 36, 50, 160, 185, 400, 593, 599, 749
AclWI GGATC 3 cut(s) 76, 266, 317
AcoI YGGCCR 2 cut(s) 33, 51
AcyI GRCGYC 1 cut(s) 41
AfeI AGCGCT 1 cut(s) 77
AfiI CCNNNNNNNGG 8 cut(s) 31, 60, 254, 446, 480, 511, 667, 740
AgsI TTSAA 1 cut(s) 480
AjnI CCWGG 6 cut(s) 369, 439, 620, 653, 893, 941
AluBI AGCT 8 cut(s) 157, 200, 219, 431, 589, 650, 674, 812
AluI AGCT 8 cut(s) 157, 200, 219, 431, 589, 650, 674, 812
Alw21I GWGCWC 3 cut(s) 159, 433, 591
Alw26I GTCTC 2 cut(s) 387, 809
AlwI GGATC 3 cut(s) 76, 266, 317
AlwNI CAGNNNCTG 1 cut(s) 241
Ama87I CYCGRG 2 cut(s) 404, 570
Aor51HI AGCGCT 1 cut(s) 77
AoxI GGCC 7 cut(s) 33, 51, 437, 891, 912, 929, 961
ApaI GGGCCC 1 cut(s) 916
ApeKI GCWGC 6 cut(s) 68, 109, 216, 488, 650, 671
ArsI GACNNNNNNTTYG 4 cut(s) 344, 365, 376, 397
AspLEI GCGC 2 cut(s) 78, 379
AspS9I GGNCC 5 cut(s) 658, 891, 912, 913, 961
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 1 cut(s) 560
AvaI CYCGRG 2 cut(s) 404, 570
AvaII GGWCC 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 5 cut(s) 159, 433, 462, 591, 916
Bbv12I GWGCWC 3 cut(s) 159, 433, 591
BbvCI CCTCAGC 1 cut(s) 824
BbvI GCAGC 6 cut(s) 55, 121, 228, 475, 637, 683
BccI CCATC 5 cut(s) 174, 248, 440, 478, 873
BciT130I CCWGG 6 cut(s) 371, 441, 622, 655, 895, 943
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 387, 809
BfoI RGCGCY 1 cut(s) 79
Bme1390I CCNGG 7 cut(s) 371, 441, 456, 622, 655, 895, 943
Bme18I GGWCC 1 cut(s) 658
BmeT110I CYCGRG 2 cut(s) 404, 570
BmgT120I GGNCC 5 cut(s) 658, 891, 912, 913, 961
BmiI GGNNCC 4 cut(s) 246, 597, 659, 914
BmrFI CCNGG 7 cut(s) 371, 441, 456, 622, 655, 895, 943
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 105, 541, 622
BmuI ACTGGG 1 cut(s) 423
BpmI CTGGAG 3 cut(s) 216, 241, 857
Bpu10I CCTNAGC 1 cut(s) 824
BpuEI CTTGAG 2 cut(s) 155, 695
BpuMI CCSGG 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 7 cut(s) 104, 336, 455, 621, 654, 894, 942
Bsc4I CCNNNNNNNGG 8 cut(s) 31, 60, 254, 446, 480, 511, 667, 740
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 418, 602
BseBI CCWGG 6 cut(s) 371, 441, 622, 655, 895, 943
BseDI CCNNGG 7 cut(s) 104, 336, 455, 621, 654, 894, 942
BseGI GGATG 6 cut(s) 117, 471, 489, 637, 870, 884
BseLI CCNNNNNNNGG 8 cut(s) 31, 60, 254, 446, 480, 511, 667, 740
BseMII CTCAG 3 cut(s) 792, 804, 815
BseNI ACTGG 2 cut(s) 418, 602
BseRI GAGGAG 3 cut(s) 319, 494, 809
BseSI GKGCMC 1 cut(s) 916
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 6 cut(s) 55, 121, 228, 475, 637, 683
BseYI CCCAGC 1 cut(s) 635
BsgI GTGCAG 3 cut(s) 254, 474, 601
Bsh1236I CGCG 6 cut(s) 38, 50, 162, 317, 377, 593
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 7 cut(s) 35, 53, 439, 893, 914, 931, 963
BshNI GGYRCC 1 cut(s) 595
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 3 cut(s) 159, 433, 591
BsiHKCI CYCGRG 2 cut(s) 404, 570
BsiSI CCGG 2 cut(s) 32, 455
BslFI GGGAC 3 cut(s) 86, 671, 869
BslI CCNNNNNNNGG 8 cut(s) 31, 60, 254, 446, 480, 511, 667, 740
BsmAI GTCTC 2 cut(s) 387, 809
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 3 cut(s) 86, 671, 869
BsmI GAATGC 1 cut(s) 948
BsnI GGCC 7 cut(s) 35, 53, 439, 893, 914, 931, 963
BsoBI CYCGRG 2 cut(s) 404, 570
Bsp120I GGGCCC 1 cut(s) 912
Bsp1286I GDGCHC 5 cut(s) 159, 433, 462, 591, 916
Bsp143I GATC 4 cut(s) 81, 258, 309, 923
Bsp19I CCATGG 1 cut(s) 336
Bsp68I TCGCGA 1 cut(s) 317
BspACI CCGC 8 cut(s) 36, 50, 160, 185, 400, 593, 599, 749
BspANI GGCC 7 cut(s) 35, 53, 439, 893, 914, 931, 963
BspCNI CTCAG 3 cut(s) 793, 805, 816
BspFNI CGCG 6 cut(s) 38, 50, 162, 317, 377, 593
BspLI GGNNCC 4 cut(s) 246, 597, 659, 914
BspPI GGATC 3 cut(s) 76, 266, 317
BspT107I GGYRCC 1 cut(s) 595
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 2 cut(s) 418, 602
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 7 cut(s) 104, 336, 455, 621, 654, 894, 942
BssMI GATC 4 cut(s) 81, 258, 309, 923
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 2 cut(s) 104, 336
Bst2UI CCWGG 6 cut(s) 371, 441, 622, 655, 895, 943
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 452, 591
BstDEI CTNAG 3 cut(s) 801, 813, 824
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 6 cut(s) 117, 471, 489, 637, 870, 884
BstFNI CGCG 6 cut(s) 38, 50, 162, 317, 377, 593
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 2 cut(s) 78, 379
BstKTI GATC 4 cut(s) 84, 261, 312, 926
BstMAI GTCTC 2 cut(s) 387, 809
BstMBI GATC 4 cut(s) 81, 258, 309, 923
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 595
BstNI CCWGG 6 cut(s) 371, 441, 622, 655, 895, 943
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 7 cut(s) 369, 439, 454, 620, 653, 893, 941
BstSLI GKGCMC 1 cut(s) 916
BstUI CGCG 6 cut(s) 38, 50, 162, 317, 377, 593
BstV1I GCAGC 6 cut(s) 55, 121, 228, 475, 637, 683
BstXI CCANNNNNNTGG 2 cut(s) 362, 628
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 7 cut(s) 35, 53, 439, 893, 914, 931, 963
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 6 cut(s) 117, 471, 489, 637, 870, 884
BtsI GCAGTG 1 cut(s) 704
BtsIMutI CAGTG 3 cut(s) 411, 609, 704
BtuMI TCGCGA 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 452, 591
CaiI CAGNNNCTG 1 cut(s) 241
CfoI GCGC 2 cut(s) 78, 379
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 5 cut(s) 658, 891, 912, 913, 961
CseI GACGC 2 cut(s) 383, 787
CviAII CATG 4 cut(s) 55, 337, 752, 927
DdeI CTNAG 3 cut(s) 801, 813, 824
DpnI GATC 4 cut(s) 83, 260, 311, 925
DpnII GATC 4 cut(s) 81, 258, 309, 923
EaeI YGGCCR 2 cut(s) 33, 51
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Ecl136II GAGCTC 3 cut(s) 157, 431, 589
EclXI CGGCCG 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 104, 336
Eco24I GRGCYC 5 cut(s) 159, 433, 462, 591, 916
Eco47I GGWCC 1 cut(s) 658
Eco47III AGCGCT 1 cut(s) 77
Eco52I CGGCCG 1 cut(s) 33
Eco53kI GAGCTC 3 cut(s) 157, 431, 589
Eco88I CYCGRG 2 cut(s) 404, 570
EcoICRI GAGCTC 3 cut(s) 157, 431, 589
EcoO109I RGGNCCY 2 cut(s) 658, 912
EcoRII CCWGG 6 cut(s) 369, 439, 620, 653, 893, 941
EcoT14I CCWWGG 2 cut(s) 104, 336
EcoT38I GRGCYC 5 cut(s) 159, 433, 462, 591, 916
ErhI CCWWGG 2 cut(s) 104, 336
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 4 cut(s) 58, 340, 755, 930
FaiI YATR 8 cut(s) 16, 56, 275, 338, 426, 753, 792, 928
FaqI GGGAC 3 cut(s) 86, 671, 869
FatI CATG 4 cut(s) 54, 336, 751, 926
FokI GGATG 6 cut(s) 104, 478, 496, 644, 877, 891
FriOI GRGCYC 5 cut(s) 159, 433, 462, 591, 916
GlaI GCGC 2 cut(s) 77, 378
GsaI CCCAGC 1 cut(s) 639
GsuI CTGGAG 3 cut(s) 216, 241, 857
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 7 cut(s) 35, 53, 439, 893, 914, 931, 963
HapII CCGG 2 cut(s) 32, 455
HgaI GACGC 2 cut(s) 383, 787
HhaI GCGC 2 cut(s) 78, 379
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 4 cut(s) 58, 340, 755, 930
Hin6I GCGC 2 cut(s) 76, 377
HinP1I GCGC 2 cut(s) 76, 377
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 4 cut(s) 238, 683, 689, 695
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 2 cut(s) 32, 455
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 2 cut(s) 6, 411
Hpy188I TCNGA 5 cut(s) 181, 263, 688, 694, 743
Hpy188III TCNNGA 7 cut(s) 195, 316, 463, 533, 570, 572, 712
Hpy8I GTNNAC 2 cut(s) 6, 411
Hpy99I CGWCG 6 cut(s) 43, 46, 152, 155, 317, 322
HpyAV CCTTC 2 cut(s) 35, 140
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4IV ACGT 2 cut(s) 41, 320
HpyCH4V TGCA 6 cut(s) 96, 216, 235, 491, 618, 720
HpyF10VI GCNNNNNNNGC 1 cut(s) 595
HpyF3I CTNAG 3 cut(s) 801, 813, 824
HpySE526I ACGT 2 cut(s) 41, 320
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 4 cut(s) 58, 340, 755, 930
HspAI GCGC 2 cut(s) 76, 377
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 4 cut(s) 81, 258, 309, 923
LmnI GCTCC 4 cut(s) 162, 197, 428, 640
Lsp1109I GCAGC 6 cut(s) 55, 121, 228, 475, 637, 683
LweI GCATC 3 cut(s) 105, 541, 622
MaeII ACGT 2 cut(s) 41, 320
MalI GATC 4 cut(s) 83, 260, 311, 925
MboI GATC 4 cut(s) 81, 258, 309, 923
MboII GAAGA 3 cut(s) 127, 238, 299
MhlI GDGCHC 5 cut(s) 159, 433, 462, 591, 916
MluCI AATT 2 cut(s) 211, 644
MlyI GAGTC 1 cut(s) 247
MseI TTAA 2 cut(s) 5, 954
MspA1I CMGCKG 2 cut(s) 219, 674
MspI CCGG 2 cut(s) 32, 455
MspR9I CCNGG 7 cut(s) 371, 441, 456, 622, 655, 895, 943
Mva1269I GAATGC 1 cut(s) 948
MvaI CCWGG 6 cut(s) 371, 441, 622, 655, 895, 943
MvnI CGCG 6 cut(s) 38, 50, 162, 317, 377, 593
MwoI GCNNNNNNNGC 1 cut(s) 595
NciI CCSGG 1 cut(s) 456
NcoI CCATGG 1 cut(s) 336
NdeII GATC 4 cut(s) 81, 258, 309, 923
NlaIII CATG 4 cut(s) 58, 340, 755, 930
NlaIV GGNNCC 4 cut(s) 246, 597, 659, 914
NmeAIII GCCGAG 1 cut(s) 97
NruI TCGCGA 1 cut(s) 317
NspI RCATGY 1 cut(s) 755
PaeR7I CTCGAG 2 cut(s) 404, 570
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 159, 402
PctI GAATGC 1 cut(s) 948
PfeI GAWTC 3 cut(s) 683, 689, 695
PfoI TCCNGGA 1 cut(s) 369
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PpuMI RGGWCCY 1 cut(s) 658
Psp124BI GAGCTC 3 cut(s) 159, 433, 591
Psp5II RGGWCCY 1 cut(s) 658
Psp6I CCWGG 6 cut(s) 369, 439, 620, 653, 893, 941
PspFI CCCAGC 1 cut(s) 635
PspGI CCWGG 6 cut(s) 369, 439, 620, 653, 893, 941
PspN4I GGNNCC 4 cut(s) 246, 597, 659, 914
PspOMI GGGCCC 1 cut(s) 912
PspPI GGNCC 5 cut(s) 658, 891, 912, 913, 961
PspPPI RGGWCCY 1 cut(s) 658
PspXI VCTCGAGB 1 cut(s) 404
PstNI CAGNNNCTG 1 cut(s) 241
PvuII CAGCTG 2 cut(s) 219, 674
RruI TCGCGA 1 cut(s) 317
SacI GAGCTC 3 cut(s) 159, 433, 591
SaqAI TTAA 2 cut(s) 5, 954
Sau3AI GATC 4 cut(s) 81, 258, 309, 923
Sau96I GGNCC 5 cut(s) 658, 891, 912, 913, 961
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 7 cut(s) 371, 441, 456, 622, 655, 895, 943
SduI GDGCHC 5 cut(s) 159, 433, 462, 591, 916
SfaNI GCATC 3 cut(s) 105, 541, 622
Sfr274I CTCGAG 2 cut(s) 404, 570
SinI GGWCC 1 cut(s) 658
SlaI CTCGAG 2 cut(s) 404, 570
SmlI CTYRAG 4 cut(s) 170, 404, 570, 710
SmoI CTYRAG 4 cut(s) 170, 404, 570, 710
Sse9I AATT 2 cut(s) 211, 644
SsiI CCGC 8 cut(s) 36, 50, 160, 185, 400, 593, 599, 749
SstI GAGCTC 3 cut(s) 159, 433, 591
StyD4I CCNGG 7 cut(s) 369, 439, 454, 620, 653, 893, 941
StyI CCWWGG 2 cut(s) 104, 336
TaaI ACNGT 1 cut(s) 360
TaiI ACGT 2 cut(s) 44, 323
TaqI TCGA 7 cut(s) 20, 59, 302, 405, 532, 571, 585
TasI AATT 2 cut(s) 211, 644
TauI GCSGC 6 cut(s) 38, 53, 188, 403, 601, 751
TfiI GAWTC 3 cut(s) 683, 689, 695
Tru1I TTAA 2 cut(s) 5, 954
Tru9I TTAA 2 cut(s) 5, 954
TscAI CASTG 3 cut(s) 418, 609, 711
TseI GCWGC 6 cut(s) 68, 109, 216, 488, 650, 671
TspDTI ATGAA 3 cut(s) 482, 591, 727
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 3 cut(s) 418, 609, 711
VpaK11BI GGWCC 1 cut(s) 658
XceI RCATGY 1 cut(s) 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XhoI CTCGAG 2 cut(s) 404, 570
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.