RLG00000005603

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011357
Physical Location & Seq
Forward (+)
233610 .. 235095
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005603

Sequence Viewer

Length: 1203 bp
ATGGGAAAGCTGTTAGAGTCTGCCCGTCCATTCTTGCGCGGTGAGCTGGAGTCGATCGACAAGAATCTGCCTTCACTTGTGAAAGTGTTGCAGTCTGTTGGAGCCGGTGAGTGCTGGCATAAGCACGGCACTTTTCTGGAGCACCTGGTAGACCTGTACCGCATTCTCAAAATATGGAAGGCCCCTGATTCCGTCTGCCTCTGCGGCCTCTTCCACTCCGCTTACTCCAATTCCTACGTCAACCTCGCCATATTCGACCCTTCCACCGGCCGCGACGTCGTTCGCCGCCATGTCGGGGAGGCTGCCGAGCGCTTGATCCACTTGTTCTGCATCGTCCCAAGGCAGCCACTCATCCACGATGACCTTCTCTTCCACTACACCGACGACGAGCTCCGCGACCATCTCAAGCAATCCGAAGCGGCTGCTGTTTCTGGAGATTCTGATAATTGCAACTGGAGGAAGAAAGTGCAGAGTCTGGTTCCTGCTGATGGGATCAGAGTGAAGCACATAAAGACTGGCGAAGATGTGTTGGTTTCGAGGAGGATCGTCGCGACGTTTGTGATGATGACCATGGCAGATTTCAGCGACCAACTGTTTGGTTTCCAGGACGCGCTGTTTGACAACGGAGACGGGCGGCTTGAGTTCACTGGGAACAACTATGGAGCTCTGTGGCCTGGCGATGGCAAGCCGGGGCTCTGGATGAACTCCATTTCAAGGATGGCTGCACTCTACACACTACTCGTCAGGGAGGAACAAGTGTTTATTCGAGAGAGAGGTGATGCCAACCTTGACATTTCTCGAGATGAAAATATCGAGCTCGTGGTGCCCCCAGTGTTTGAGAACTGCACCAGGGTTTTGGATGCTGGGGAGCAATTAGCTGCCAGGGAACTCTATTGGGAAGCTGTTTGTGATTCTGATTCCGATTCTGCTTCACTGCTCAAGAGTTGCGTTGAGAAAAACCCTTTCATCGGAGAGCCGCATGTGGTGTTGGGTCAGGTTTATCTGACGCAGGGAAAGTTTGAGGAGGCTGAGAGAGAAGCTGAGACAGGGCTGAGGCTTCTGCTGGAATGGGCGAGTCCTTGGGACAAGAGGATGACTTGGCAAGGATGGATTGCTTGGGCCAGGGTTCTGCTGATGAAGGCCCAAGAAAGATCATGGCCTCAAACTTCCTGGGGCATTCTCAACTTAGGCCTCGTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

45.32

Weight (kDa)

5.39

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6817 PF20680 29 - 114 1.8e-29 Domain of unknown function (DUF6817)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 823
AccI GTMKAC 1 cut(s) 150
AccII CGCG 5 cut(s) 39, 273, 396, 551, 611
AclWI GGATC 3 cut(s) 310, 500, 551
AcoI YGGCCR 1 cut(s) 268
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 158
AfeI AGCGCT 1 cut(s) 311
AfiI CCNNNNNNNGG 6 cut(s) 266, 295, 488, 680, 714, 968
AgsI TTSAA 1 cut(s) 714
AjnI CCWGG 7 cut(s) 144, 603, 673, 848, 881, 1121, 1169
AluBI AGCT 8 cut(s) 10, 46, 391, 665, 817, 878, 902, 1040
AluI AGCT 8 cut(s) 10, 46, 391, 665, 817, 878, 902, 1040
Alw21I GWGCWC 4 cut(s) 144, 393, 667, 819
Alw26I GTCTC 2 cut(s) 621, 1037
AlwI GGATC 3 cut(s) 310, 500, 551
AlwNI CAGNNNCTG 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 798
Aor51HI AGCGCT 1 cut(s) 311
AoxI GGCC 8 cut(s) 180, 205, 268, 671, 1119, 1140, 1157, 1189
ApeKI GCWGC 5 cut(s) 302, 343, 422, 722, 878
ArsI GACNNNNNNTTYG 4 cut(s) 578, 599, 610, 631
AspLEI GCGC 3 cut(s) 39, 312, 613
AspS9I GGNCC 3 cut(s) 181, 1119, 1141
AsuC2I CCSGG 1 cut(s) 690
AsuHPI GGTGA 3 cut(s) 53, 119, 788
AvaI CYCGRG 1 cut(s) 798
BaeGI GKGCMC 1 cut(s) 828
BanI GGYRCC 1 cut(s) 823
BanII GRGCYC 4 cut(s) 393, 667, 696, 819
BauI CACGAG 1 cut(s) 818
Bbv12I GWGCWC 4 cut(s) 144, 393, 667, 819
BbvCI CCTCAGC 1 cut(s) 1052
BbvI GCAGC 5 cut(s) 289, 355, 409, 709, 865
BccI CCATC 5 cut(s) 408, 482, 674, 712, 1101
BceAI ACGGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 7 cut(s) 146, 605, 675, 850, 883, 1123, 1171
BcnI CCSGG 1 cut(s) 690
BcoDI GTCTC 2 cut(s) 621, 1037
BfoI RGCGCY 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 204
Bme1390I CCNGG 8 cut(s) 146, 605, 675, 690, 850, 883, 1123, 1171
BmeT110I CYCGRG 1 cut(s) 798
BmgT120I GGNCC 3 cut(s) 181, 1119, 1141
BmiI GGNNCC 4 cut(s) 103, 183, 480, 825
BmrFI CCNGG 8 cut(s) 146, 605, 675, 690, 850, 883, 1123, 1171
BmrI ACTGGG 2 cut(s) 657, 824
BmsI GCATC 3 cut(s) 339, 769, 850
BmuI ACTGGG 2 cut(s) 657, 824
BpmI CTGGAG 4 cut(s) 68, 158, 453, 475
Bpu10I CCTNAGC 1 cut(s) 1052
BpuEI CTTGAG 3 cut(s) 389, 659, 923
BpuMI CCSGG 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 8 cut(s) 338, 570, 689, 849, 882, 1079, 1122, 1170
Bsc4I CCNNNNNNNGG 6 cut(s) 266, 295, 488, 680, 714, 968
Bse118I RCCGGY 2 cut(s) 104, 266
Bse1I ACTGG 4 cut(s) 458, 520, 652, 830
BseBI CCWGG 7 cut(s) 146, 605, 675, 850, 883, 1123, 1171
BseDI CCNNGG 8 cut(s) 338, 570, 689, 849, 882, 1079, 1122, 1170
BseGI GGATG 6 cut(s) 351, 705, 723, 865, 1098, 1112
BseLI CCNNNNNNNGG 6 cut(s) 266, 295, 488, 680, 714, 968
BseMII CTCAG 3 cut(s) 1020, 1032, 1043
BseNI ACTGG 4 cut(s) 458, 520, 652, 830
BseRI GAGGAG 2 cut(s) 553, 1037
BseSI GKGCMC 1 cut(s) 828
BseX3I CGGCCG 1 cut(s) 268
BseXI GCAGC 5 cut(s) 289, 355, 409, 709, 865
BseYI CCCAGC 1 cut(s) 863
BsgI GTGCAG 3 cut(s) 488, 708, 829
Bsh1236I CGCG 5 cut(s) 39, 273, 396, 551, 611
Bsh1285I CGRYCG 2 cut(s) 57, 271
BshFI GGCC 8 cut(s) 182, 207, 270, 673, 1121, 1142, 1159, 1191
BshNI GGYRCC 1 cut(s) 823
BsiEI CGRYCG 2 cut(s) 57, 271
BsiHKAI GWGCWC 4 cut(s) 144, 393, 667, 819
BsiHKCI CYCGRG 1 cut(s) 798
BsiSI CCGG 3 cut(s) 105, 267, 689
BslFI GGGAC 2 cut(s) 320, 1097
BslI CCNNNNNNNGG 6 cut(s) 266, 295, 488, 680, 714, 968
BsmAI GTCTC 2 cut(s) 621, 1037
BsmBI CGTCTC 1 cut(s) 621
BsmFI GGGAC 2 cut(s) 320, 1097
BsmI GAATGC 2 cut(s) 162, 1176
BsnI GGCC 8 cut(s) 182, 207, 270, 673, 1121, 1142, 1159, 1191
BsoBI CYCGRG 1 cut(s) 798
Bsp1286I GDGCHC 6 cut(s) 144, 393, 667, 696, 819, 828
Bsp143I GATC 5 cut(s) 54, 315, 492, 543, 1151
Bsp19I CCATGG 1 cut(s) 570
Bsp68I TCGCGA 1 cut(s) 551
BspANI GGCC 8 cut(s) 182, 207, 270, 673, 1121, 1142, 1159, 1191
BspCNI CTCAG 3 cut(s) 1021, 1033, 1044
BspFNI CGCG 5 cut(s) 39, 273, 396, 551, 611
BspLI GGNNCC 4 cut(s) 103, 183, 480, 825
BspPI GGATC 3 cut(s) 310, 500, 551
BspT107I GGYRCC 1 cut(s) 823
BsrFI RCCGGY 2 cut(s) 104, 266
BsrI ACTGG 4 cut(s) 458, 520, 652, 830
BssAI RCCGGY 2 cut(s) 104, 266
BssECI CCNNGG 8 cut(s) 338, 570, 689, 849, 882, 1079, 1122, 1170
BssMI GATC 5 cut(s) 54, 315, 492, 543, 1151
BssNI GRCGYC 1 cut(s) 276
BssSI CACGAG 1 cut(s) 818
BssT1I CCWWGG 3 cut(s) 338, 570, 1079
Bst2BI CACGAG 1 cut(s) 818
Bst2UI CCWGG 7 cut(s) 146, 605, 675, 850, 883, 1123, 1171
Bst4CI ACNGT 1 cut(s) 594
Bst6I CTCTTC 2 cut(s) 215, 374
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 116, 686
BstDEI CTNAG 4 cut(s) 1029, 1041, 1052, 1186
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 6 cut(s) 351, 705, 723, 865, 1098, 1112
BstFNI CGCG 5 cut(s) 39, 273, 396, 551, 611
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 3 cut(s) 39, 312, 613
BstKTI GATC 5 cut(s) 57, 318, 495, 546, 1154
BstMAI GTCTC 2 cut(s) 621, 1037
BstMBI GATC 5 cut(s) 54, 315, 492, 543, 1151
BstMCI CGRYCG 2 cut(s) 57, 271
BstMWI GCNNNNNNNGC 3 cut(s) 43, 204, 823
BstNI CCWGG 7 cut(s) 146, 605, 675, 850, 883, 1123, 1171
BstNSI RCATGY 1 cut(s) 983
BstSCI CCNGG 8 cut(s) 144, 603, 673, 688, 848, 881, 1121, 1169
BstSLI GKGCMC 1 cut(s) 828
BstUI CGCG 5 cut(s) 39, 273, 396, 551, 611
BstV1I GCAGC 5 cut(s) 289, 355, 409, 709, 865
BstXI CCANNNNNNTGG 2 cut(s) 596, 856
BstZI CGGCCG 1 cut(s) 268
BsuRI GGCC 8 cut(s) 182, 207, 270, 673, 1121, 1142, 1159, 1191
BtgI CCRYGG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 693
BtsCI GGATG 6 cut(s) 351, 705, 723, 865, 1098, 1112
BtsI GCAGTG 1 cut(s) 932
BtsIMutI CAGTG 3 cut(s) 645, 837, 932
BtuMI TCGCGA 1 cut(s) 551
Cac8I GCNNGC 2 cut(s) 116, 686
CaiI CAGNNNCTG 1 cut(s) 475
CfoI GCGC 3 cut(s) 39, 312, 613
Cfr10I RCCGGY 2 cut(s) 104, 266
Cfr13I GGNCC 3 cut(s) 181, 1119, 1141
CseI GACGC 2 cut(s) 617, 1015
CsiI ACCWGGT 1 cut(s) 144
Csp6I GTAC 1 cut(s) 157
CviAII CATG 4 cut(s) 290, 571, 980, 1155
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 4 cut(s) 1029, 1041, 1052, 1186
DpnI GATC 5 cut(s) 56, 317, 494, 545, 1153
DpnII GATC 5 cut(s) 54, 315, 492, 543, 1151
EaeI YGGCCR 1 cut(s) 268
EagI CGGCCG 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 215, 374
EarI CTCTTC 2 cut(s) 215, 374
Ecl136II GAGCTC 3 cut(s) 391, 665, 817
EclXI CGGCCG 1 cut(s) 268
Eco130I CCWWGG 3 cut(s) 338, 570, 1079
Eco147I AGGCCT 1 cut(s) 1191
Eco24I GRGCYC 4 cut(s) 393, 667, 696, 819
Eco47III AGCGCT 1 cut(s) 311
Eco52I CGGCCG 1 cut(s) 268
Eco53kI GAGCTC 3 cut(s) 391, 665, 817
Eco88I CYCGRG 1 cut(s) 798
EcoICRI GAGCTC 3 cut(s) 391, 665, 817
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 7 cut(s) 144, 603, 673, 848, 881, 1121, 1169
EcoT14I CCWWGG 3 cut(s) 338, 570, 1079
EcoT38I GRGCYC 4 cut(s) 393, 667, 696, 819
ErhI CCWWGG 3 cut(s) 338, 570, 1079
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 4 cut(s) 293, 574, 983, 1158
FaiI YATR 9 cut(s) 120, 175, 251, 291, 509, 572, 660, 981, 1156
FaqI GGGAC 2 cut(s) 320, 1097
FatI CATG 4 cut(s) 289, 570, 979, 1154
FblI GTMKAC 1 cut(s) 150
FokI GGATG 6 cut(s) 338, 712, 730, 872, 1105, 1119
FriOI GRGCYC 4 cut(s) 393, 667, 696, 819
GlaI GCGC 3 cut(s) 38, 311, 612
GsaI CCCAGC 1 cut(s) 867
GsuI CTGGAG 4 cut(s) 68, 158, 453, 475
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 8 cut(s) 182, 207, 270, 673, 1121, 1142, 1159, 1191
HapII CCGG 3 cut(s) 105, 267, 689
HgaI GACGC 2 cut(s) 617, 1015
HhaI GCGC 3 cut(s) 39, 312, 613
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 4 cut(s) 293, 574, 983, 1158
Hin6I GCGC 3 cut(s) 37, 310, 611
HinP1I GCGC 3 cut(s) 37, 310, 611
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HpaII CCGG 3 cut(s) 105, 267, 689
HphI GGTGA 3 cut(s) 53, 119, 788
Hpy166II GTNNAC 3 cut(s) 151, 241, 645
Hpy188I TCNGA 7 cut(s) 415, 442, 497, 916, 922, 971, 1005
Hpy188III TCNNGA 8 cut(s) 137, 432, 550, 697, 767, 798, 800, 940
Hpy8I GTNNAC 3 cut(s) 151, 241, 645
Hpy99I CGWCG 6 cut(s) 278, 281, 386, 389, 551, 556
HpyAV CCTTC 5 cut(s) 81, 172, 270, 374, 1132
HpyCH4III ACNGT 1 cut(s) 594
HpyCH4IV ACGT 3 cut(s) 237, 276, 554
HpyCH4V TGCA 6 cut(s) 91, 330, 450, 469, 725, 846
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 204, 823
HpyF3I CTNAG 4 cut(s) 1029, 1041, 1052, 1186
HpySE526I ACGT 3 cut(s) 237, 276, 554
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 4 cut(s) 293, 574, 983, 1158
HspAI GCGC 3 cut(s) 37, 310, 611
Kzo9I GATC 5 cut(s) 54, 315, 492, 543, 1151
LmnI GCTCC 5 cut(s) 101, 139, 396, 662, 868
Lsp1109I GCAGC 5 cut(s) 289, 355, 409, 709, 865
LweI GCATC 3 cut(s) 339, 769, 850
MabI ACCWGGT 1 cut(s) 144
MaeII ACGT 3 cut(s) 237, 276, 554
MalI GATC 5 cut(s) 56, 317, 494, 545, 1153
MboI GATC 5 cut(s) 54, 315, 492, 543, 1151
MboII GAAGA 4 cut(s) 202, 361, 472, 533
MhlI GDGCHC 6 cut(s) 144, 393, 667, 696, 819, 828
MluCI AATT 3 cut(s) 229, 445, 872
MlyI GAGTC 4 cut(s) 26, 59, 481, 1084
MmeI TCCRAC 1 cut(s) 79
MspI CCGG 3 cut(s) 105, 267, 689
MspR9I CCNGG 8 cut(s) 146, 605, 675, 690, 850, 883, 1123, 1171
Mva1269I GAATGC 2 cut(s) 162, 1176
MvaI CCWGG 7 cut(s) 146, 605, 675, 850, 883, 1123, 1171
MvnI CGCG 5 cut(s) 39, 273, 396, 551, 611
MwoI GCNNNNNNNGC 3 cut(s) 43, 204, 823
NciI CCSGG 1 cut(s) 690
NcoI CCATGG 1 cut(s) 570
NdeII GATC 5 cut(s) 54, 315, 492, 543, 1151
NlaIII CATG 4 cut(s) 293, 574, 983, 1158
NlaIV GGNNCC 4 cut(s) 103, 183, 480, 825
NmeAIII GCCGAG 1 cut(s) 331
NruI TCGCGA 1 cut(s) 551
NspI RCATGY 1 cut(s) 983
PaeR7I CTCGAG 1 cut(s) 798
PceI AGGCCT 1 cut(s) 1191
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 393
PctI GAATGC 2 cut(s) 162, 1176
PfeI GAWTC 6 cut(s) 64, 188, 437, 911, 917, 923
PfoI TCCNGGA 1 cut(s) 603
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 4 cut(s) 25, 58, 480, 1083
PpsI GAGTC 4 cut(s) 25, 58, 480, 1083
Psp124BI GAGCTC 3 cut(s) 393, 667, 819
Psp6I CCWGG 7 cut(s) 144, 603, 673, 848, 881, 1121, 1169
PspFI CCCAGC 1 cut(s) 863
PspGI CCWGG 7 cut(s) 144, 603, 673, 848, 881, 1121, 1169
PspN4I GGNNCC 4 cut(s) 103, 183, 480, 825
PspPI GGNCC 3 cut(s) 181, 1119, 1141
PstNI CAGNNNCTG 1 cut(s) 475
PvuI CGATCG 1 cut(s) 57
RruI TCGCGA 1 cut(s) 551
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacI GAGCTC 3 cut(s) 393, 667, 819
Sau3AI GATC 5 cut(s) 54, 315, 492, 543, 1151
Sau96I GGNCC 3 cut(s) 181, 1119, 1141
SchI GAGTC 4 cut(s) 26, 59, 481, 1084
ScrFI CCNGG 8 cut(s) 146, 605, 675, 690, 850, 883, 1123, 1171
SduI GDGCHC 6 cut(s) 144, 393, 667, 696, 819, 828
SexAI ACCWGGT 1 cut(s) 144
SfaNI GCATC 3 cut(s) 339, 769, 850
Sfr274I CTCGAG 1 cut(s) 798
SlaI CTCGAG 1 cut(s) 798
SmlI CTYRAG 4 cut(s) 404, 638, 798, 938
SmoI CTYRAG 4 cut(s) 404, 638, 798, 938
Sse9I AATT 3 cut(s) 229, 445, 872
SseBI AGGCCT 1 cut(s) 1191
SstI GAGCTC 3 cut(s) 393, 667, 819
StuI AGGCCT 1 cut(s) 1191
StyD4I CCNGG 8 cut(s) 144, 603, 673, 688, 848, 881, 1121, 1169
StyI CCWWGG 3 cut(s) 338, 570, 1079
TaaI ACNGT 1 cut(s) 594
TaiI ACGT 3 cut(s) 240, 279, 557
TaqI TCGA 7 cut(s) 53, 57, 255, 536, 766, 799, 813
TasI AATT 3 cut(s) 229, 445, 872
TauI GCSGC 6 cut(s) 207, 273, 288, 422, 637, 979
TfiI GAWTC 6 cut(s) 64, 188, 437, 911, 917, 923
TscAI CASTG 3 cut(s) 652, 837, 939
TseI GCWGC 5 cut(s) 302, 343, 422, 722, 878
TspDTI ATGAA 4 cut(s) 716, 819, 955, 1151
TspGWI ACGGA 2 cut(s) 181, 639
TspRI CASTG 3 cut(s) 652, 837, 939
XceI RCATGY 1 cut(s) 983
XcmI CCANNNNNNNNNTGG 1 cut(s) 715
XhoI CTCGAG 1 cut(s) 798
XmiI GTMKAC 1 cut(s) 150
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.