Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011885

Physical Location & Seq

Genomic Coordinates Reverse (-)

7328576 .. 7330751

Gene Structure 2176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAGAAGCCGGTCGGAGCCGAGAAGAAGAGGGTTAAACGATCATCGGGATCTGCATCTACTTCCGTTAGAGATTCTGGTTCTGATTCTCAACCTAGGAAGCAAGCTGTGAAGAAGGATAGTTTTCAGTTGTTTGCTGAGAAAGTTAGAGACCACAAGGGATTAGAATCCAGATGGGCTGTTATGGAGCAAGCACGAGTTGAATACTTTAGAGGGAAAGATTTTGTGAGCTTTATGAAGAATAACCCTGACTTTAAAGATATTCTGGAAGAAGATAAAGACCTTGACACAGACGATATTGCCAATGTTTTGTTGGGAAAGAACCTTTTGGTCCGCTGTGATCGTGTTACTAAAACTCTTCGTCCCGGGAAGAAAAAGCTCTCTACTTGGCCTGCTCATTTGGAGATTTTCCGTGACGATCAATCTTTCTCTGAAAATGATGCCTTTTTTGCATGGACGTTCGAAAAACGGCATCCGCTATGGCAAACGCTTTTGTCCTTCTTCTGGCCTGTATTGACTCTTGCAATTTGTTTGTTTCCTGTGTATCCACACCGTTGCAAACTAATTGTACTCTACTCATGTGCGGGCATTCTTCTGATGATTCTCTCCTTACTTTTCGTGAGAGCAGTTGCTTTCGGTGCTATGTGGATTCTTTTGGGAAAGCGTGTCTGGTTCTTCCCCAACATTCTAGCTGAGGAAGCCACATTGAAGGAACTGTTCCGTTTCTGGCCAAAGAAAGACGAGGAAGAACCGCCCAAGTGGACATCTCGACTTTTCTACACAGTAGTGGCTATTGTTGTTGTCATGCTGCTTAGGCGTCATGCCCCTGATGAAGCTGCTCGGGCCAGGTACCAAAGAAGGATGTCCAACATCATTGATGATGTCCTTGAGTGGTCACCAAAGCTAGCACTTTCTGGTTTGATGGAGAATCAGCAACCTGTAAACATCACAGATGCGGCAAACAACTCCTCAGATTCAGCAGGAGGTCCCGACCAGACTGAAGAGGTCGACCTAGATGAAACTCAAGGCGAGGACCTAGACGAAACGCAAGGCAAGGAGGAAGCTGAAGGTTGGACTGACTCTGATCTTAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031205 GO:0031207 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

Sec62

Protein Analysis

365

Amino Acids

41.94

Weight (kDa)

6.08

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec62	PF03839	108 - 231	6.8e-14	Translocation protein Sec62

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20920 AT3G20920
fragaria_vesca	FvH4_3g28770
malus_domestica	MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica	Prupe.4G250000_v2.0.a1
pyrus_communis	pycom03g13190 pycom11g16810
rosa_chinensis	RchiOBHm_Chr5g0052271
rosa_laevigata	RLG00000034829
rosa_multiflora	Rmu_sc0009513.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028110
rosa_rugosa	Rorug05G0273200
rosa_samantha	Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana	Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	849
AccB1I	GGYRCC	1 cut(s)	849
AccI	GTMKAC	1 cut(s)	1008
AciI	CCGC	5 cut(s)	334, 476, 584, 752, 956
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	728
AcuI	CTGAAG	2 cut(s)	1020, 1086
AcyI	GRCGYC	1 cut(s)	817
AfaI	GTAC	2 cut(s)	570, 851
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	2 cut(s)	203, 709
AjnI	CCWGG	1 cut(s)	845
AleI	CACNNNNGTG	1 cut(s)	785
AluBI	AGCT	7 cut(s)	107, 231, 379, 692, 836, 904, 1064
AluI	AGCT	7 cut(s)	107, 231, 379, 692, 836, 904, 1064
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	58
Ama87I	CYCGRG	2 cut(s)	365, 840
AoxI	GGCC	4 cut(s)	389, 506, 728, 843
ApeKI	GCWGC	2 cut(s)	808, 836
Asp718I	GGTACC	1 cut(s)	849
AspA2I	CCTAGG	1 cut(s)	95
AspS9I	GGNCC	4 cut(s)	331, 843, 986, 1033
AsuC2I	CCSGG	2 cut(s)	366, 367
AsuHPI	GGTGA	1 cut(s)	888
AsuII	TTCGAA	1 cut(s)	462
AsuNHI	GCTAGC	1 cut(s)	904
AvaI	CYCGRG	2 cut(s)	365, 840
AvaII	GGWCC	3 cut(s)	331, 986, 1033
AvrII	CCTAGG	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	849
BauI	CACGAG	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	795, 823
BccI	CCATC	2 cut(s)	168, 916
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	847
BciVI	GTATCC	1 cut(s)	555
BcnI	CCSGG	2 cut(s)	366, 367
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	5 cut(s)	96, 689, 905, 1013, 1037
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	3 cut(s)	809, 837, 957
BlnI	CCTAGG	1 cut(s)	95
BlsI	GCNGC	3 cut(s)	810, 838, 958
Bme1390I	CCNGG	3 cut(s)	366, 367, 847
Bme18I	GGWCC	3 cut(s)	331, 986, 1033
BmeT110I	CYCGRG	2 cut(s)	365, 840
BmgT120I	GGNCC	4 cut(s)	331, 843, 986, 1033
BmiI	GGNNCC	3 cut(s)	19, 851, 988
BmrFI	CCNGG	3 cut(s)	366, 367, 847
BmsI	GCATC	4 cut(s)	65, 430, 481, 943
BmtI	GCTAGC	1 cut(s)	908
Bpu10I	CCTNAGC	2 cut(s)	693, 812
Bpu14I	TTCGAA	1 cut(s)	462
BpuEI	CTTGAG	2 cut(s)	908, 1008
BpuMI	CCSGG	2 cut(s)	366, 367
BsaBI	GATNNNNATC	2 cut(s)	55, 166
BsaHI	GRCGYC	1 cut(s)	817
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	95, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse118I	RCCGGY	1 cut(s)	10
Bse8I	GATNNNNATC	2 cut(s)	55, 166
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	2 cut(s)	95, 365
BseGI	GGATG	2 cut(s)	472, 867
BseJI	GATNNNNATC	2 cut(s)	55, 166
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMII	CTCAG	3 cut(s)	129, 684, 984
BseRI	GAGGAG	1 cut(s)	958
BseXI	GCAGC	2 cut(s)	795, 823
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	4 cut(s)	391, 508, 730, 845
BshNI	GGYRCC	1 cut(s)	849
BsiEI	CGRYCG	1 cut(s)	15
BsiHKCI	CYCGRG	2 cut(s)	365, 840
BsiSI	CCGG	2 cut(s)	11, 366
BslFI	GGGAC	2 cut(s)	348, 972
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	348, 972
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	4 cut(s)	391, 508, 730, 845
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	2 cut(s)	365, 840
Bsp119I	TTCGAA	1 cut(s)	462
Bsp143I	GATC	5 cut(s)	41, 50, 340, 418, 1084
BspACI	CCGC	5 cut(s)	334, 476, 584, 752, 956
BspANI	GGCC	4 cut(s)	391, 508, 730, 845
BspCNI	CTCAG	3 cut(s)	130, 685, 983
BspLI	GGNNCC	3 cut(s)	19, 851, 988
BspOI	GCTAGC	1 cut(s)	908
BspPI	GGATC	1 cut(s)	58
BspT104I	TTCGAA	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	849
BspTNI	GGTCTC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	95, 365
BssMI	GATC	5 cut(s)	41, 50, 340, 418, 1084
BssNI	GRCGYC	1 cut(s)	817
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	3 cut(s)	554, 717, 784
Bst6I	CTCTTC	3 cut(s)	23, 363, 996
BstACI	GRCGYC	1 cut(s)	817
BstBI	TTCGAA	1 cut(s)	462
BstC8I	GCNNGC	5 cut(s)	105, 192, 393, 586, 906
BstDEI	CTNAG	4 cut(s)	138, 693, 812, 970
BstEII	GGTNACC	1 cut(s)	894
BstF5I	GGATG	2 cut(s)	472, 867
BstKTI	GATC	5 cut(s)	44, 53, 343, 421, 1087
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	5 cut(s)	41, 50, 340, 418, 1084
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	5 cut(s)	449, 638, 698, 814, 842
BstNI	CCWGG	1 cut(s)	847
BstPI	GGTNACC	1 cut(s)	894
BstSCI	CCNGG	3 cut(s)	364, 365, 845
BstV1I	GCAGC	2 cut(s)	795, 823
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	391, 508, 730, 845
BtsCI	GGATG	2 cut(s)	472, 867
Cac8I	GCNNGC	5 cut(s)	105, 192, 393, 586, 906
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	4 cut(s)	331, 843, 986, 1033
Cfr9I	CCCGGG	1 cut(s)	365
CseI	GACGC	1 cut(s)	806
Csp6I	GTAC	2 cut(s)	569, 850
CviAII	CATG	4 cut(s)	453, 579, 805, 821
CviQI	GTAC	2 cut(s)	569, 850
DdeI	CTNAG	4 cut(s)	138, 693, 812, 970
DpnI	GATC	5 cut(s)	43, 52, 342, 420, 1086
DpnII	GATC	5 cut(s)	41, 50, 340, 418, 1084
DraI	TTTAAA	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	728
Eam1104I	CTCTTC	3 cut(s)	23, 363, 996
EarI	CTCTTC	3 cut(s)	23, 363, 996
Eco130I	CCWWGG	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	3 cut(s)	331, 986, 1033
Eco57I	CTGAAG	2 cut(s)	1020, 1086
Eco88I	CYCGRG	2 cut(s)	365, 840
Eco91I	GGTNACC	1 cut(s)	894
EcoO109I	RGGNCCY	2 cut(s)	986, 1033
EcoO65I	GGTNACC	1 cut(s)	894
EcoRII	CCWGG	1 cut(s)	845
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	4 cut(s)	456, 582, 808, 824
FaiI	YATR	9 cut(s)	185, 236, 454, 481, 580, 644, 806, 822, 1096
FaqI	GGGAC	2 cut(s)	348, 972
FatI	CATG	4 cut(s)	452, 578, 804, 820
FauI	CCCGC	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	1008
Fnu4HI	GCNGC	3 cut(s)	809, 837, 957
FokI	GGATG	2 cut(s)	459, 874
Fsp4HI	GCNGC	3 cut(s)	809, 837, 957
FspBI	CTAG	5 cut(s)	96, 689, 905, 1013, 1037
GluI	GCNGC	3 cut(s)	809, 837, 957
HaeIII	GGCC	4 cut(s)	391, 508, 730, 845
HapII	CCGG	2 cut(s)	11, 366
HgaI	GACGC	1 cut(s)	806
Hin1I	GRCGYC	1 cut(s)	817
Hin1II	CATG	4 cut(s)	456, 582, 808, 824
HincII	GTYRAC	1 cut(s)	1009
HindII	GTYRAC	1 cut(s)	1009
HinfI	GANTC	9 cut(s)	74, 86, 167, 517, 601, 649, 928, 974, 1079
HpaII	CCGG	2 cut(s)	11, 366
HphI	GGTGA	1 cut(s)	888
Hpy166II	GTNNAC	3 cut(s)	762, 943, 1009
Hpy188I	TCNGA	6 cut(s)	17, 85, 433, 597, 973, 1084
Hpy188III	TCNNGA	6 cut(s)	48, 171, 266, 619, 768, 989
Hpy8I	GTNNAC	3 cut(s)	762, 943, 1009
HpyAV	CCTTC	5 cut(s)	109, 508, 703, 852, 1061
HpyCH4III	ACNGT	3 cut(s)	554, 717, 784
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	4 cut(s)	56, 452, 524, 558
HpyF10VI	GCNNNNNNNGC	5 cut(s)	449, 638, 698, 814, 842
HpyF3I	CTNAG	4 cut(s)	138, 693, 812, 970
HpySE526I	ACGT	1 cut(s)	458
Hsp92I	GRCGYC	1 cut(s)	817
Hsp92II	CATG	4 cut(s)	456, 582, 808, 824
KpnI	GGTACC	1 cut(s)	853
Kzo9I	GATC	5 cut(s)	41, 50, 340, 418, 1084
LmnI	GCTCC	2 cut(s)	17, 187
Lsp1109I	GCAGC	2 cut(s)	795, 823
LweI	GCATC	4 cut(s)	65, 430, 481, 943
MaeI	CTAG	5 cut(s)	96, 689, 905, 1013, 1037
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	3 cut(s)	346, 413, 894
MalI	GATC	5 cut(s)	43, 52, 342, 420, 1086
MboI	GATC	5 cut(s)	41, 50, 340, 418, 1084
MflI	RGATCY	1 cut(s)	50
MlsI	TGGCCA	1 cut(s)	730
MluCI	AATT	2 cut(s)	525, 564
MluNI	TGGCCA	1 cut(s)	730
MlyI	GAGTC	2 cut(s)	511, 1073
MmeI	TCCRAC	2 cut(s)	891, 1052
MnlI	CCTC	9 cut(s)	24, 206, 688, 736, 977, 979, 997, 1024, 1051
Mox20I	TGGCCA	1 cut(s)	730
MscI	TGGCCA	1 cut(s)	730
MseI	TTAA	3 cut(s)	36, 255, 1089
MslI	CAYNNNNRTG	1 cut(s)	785
Msp20I	TGGCCA	1 cut(s)	730
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	2 cut(s)	11, 366
MspR9I	CCNGG	3 cut(s)	366, 367, 847
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	847
MwoI	GCNNNNNNNGC	5 cut(s)	449, 638, 698, 814, 842
NciI	CCSGG	2 cut(s)	366, 367
NdeII	GATC	5 cut(s)	41, 50, 340, 418, 1084
NheI	GCTAGC	1 cut(s)	904
NlaIII	CATG	4 cut(s)	456, 582, 808, 824
NlaIV	GGNNCC	3 cut(s)	19, 851, 988
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	413, 894
NspV	TTCGAA	1 cut(s)	462
OliI	CACNNNNGTG	1 cut(s)	785
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	7 cut(s)	74, 86, 167, 601, 649, 928, 974
PkrI	GCNGC	3 cut(s)	810, 838, 958
PleI	GAGTC	2 cut(s)	511, 1073
PpsI	GAGTC	2 cut(s)	511, 1073
PpuMI	RGGWCCY	2 cut(s)	986, 1033
Psp5II	RGGWCCY	2 cut(s)	986, 1033
Psp6I	CCWGG	1 cut(s)	845
PspEI	GGTNACC	1 cut(s)	894
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	3 cut(s)	19, 851, 988
PspPI	GGNCC	4 cut(s)	331, 843, 986, 1033
PspPPI	RGGWCCY	2 cut(s)	986, 1033
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	2 cut(s)	570, 851
RsaNI	GTAC	2 cut(s)	569, 850
RseI	CAYNNNNRTG	1 cut(s)	785
SalI	GTCGAC	1 cut(s)	1007
SaqAI	TTAA	3 cut(s)	36, 255, 1089
SatI	GCNGC	3 cut(s)	809, 837, 957
Sau3AI	GATC	5 cut(s)	41, 50, 340, 418, 1084
Sau96I	GGNCC	4 cut(s)	331, 843, 986, 1033
SchI	GAGTC	2 cut(s)	511, 1073
ScrFI	CCNGG	3 cut(s)	366, 367, 847
SfaNI	GCATC	4 cut(s)	65, 430, 481, 943
SfuI	TTCGAA	1 cut(s)	462
SinI	GGWCC	3 cut(s)	331, 986, 1033
SmaI	CCCGGG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	887, 1023
SmoI	CTYRAG	2 cut(s)	887, 1023
Sse9I	AATT	2 cut(s)	525, 564
SsiI	CCGC	5 cut(s)	334, 476, 584, 752, 956
SspMI	CTAG	5 cut(s)	96, 689, 905, 1013, 1037
StyD4I	CCNGG	3 cut(s)	364, 365, 845
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	3 cut(s)	554, 717, 784
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	3 cut(s)	462, 769, 1008
TasI	AATT	2 cut(s)	525, 564
TatI	WGTACW	1 cut(s)	568
TauI	GCSGC	1 cut(s)	959
TfiI	GAWTC	7 cut(s)	74, 86, 167, 601, 649, 928, 974
Tru1I	TTAA	3 cut(s)	36, 255, 1089
Tru9I	TTAA	3 cut(s)	36, 255, 1089
TseFI	GTSAC	2 cut(s)	413, 894
TseI	GCWGC	2 cut(s)	808, 836
Tsp45I	GTSAC	2 cut(s)	413, 894
TspDTI	ATGAA	4 cut(s)	17, 251, 846, 1032
TspGWI	ACGGA	3 cut(s)	55, 401, 710
TspMI	CCCGGG	1 cut(s)	365
VpaK11BI	GGWCC	3 cut(s)	331, 986, 1033
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmaI	CCCGGG	1 cut(s)	365
XmaJI	CCTAGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	1008
XspI	CTAG	5 cut(s)	96, 689, 905, 1013, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.