Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009513.1

Orthogroup ID

OG0011885

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 6598

Gene Structure 6559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgaagaaaactggaggtgcagaaaagaaacgggtccgaaggtcctctgcagctcttcagaacggcggccgggattccaactccgacacccctcctaggaagcaagcagccaagcaggatgagttccagttgtttgcagagaaggtgagagaccacaaggatttggtgtctaggtgggctgttctacaggagacacgggtagaatatttcagagggaaggattttgtaagctttttgagaaatcatccagagctcaaagacattctagaatcagataggaatttagaagctgaagatattgccaatatcttactgagaaagaatcttctagtgcggtgcgatcgtgttgtgaaaactgttcgtcctgggaagaagaaattgtctacatggcctgcacatttggagatcttttcagagcaaggattttctgagaatgacgccttctttgcatggacttttgttaaacggcggcctctctggcagacacttctttcatttttctggcctgttgtgacattggcaatttgcttgtttcctgtatacccccatcggtgcaagctactaatactctactcgtgtctcggggtcctgctgcttttcctttctctacttgttttgaggggtgcaatatttggtgctctatacattgttttggggaagcgagtttggtttttcccaaacattctcgccgaggaagccactttgagggaactgttccgtttctgcccccagaaagatgaggaggagcgaccaaagtggacaacaaggatcttctatgcggtacttgcagtgctggtcatattgctgatgaggcaccatgcccctgatgaagctgccagagccaggtatcagaaacgtgtatcaaatataatcgatgatgttcttgagtgggatccaagattggccctctctgggatgatggagaagcaatctttgtttaatgagacagagccaagcaatgctactgatgaagaggtgacaccaccggtggatggggtgggtgcaaaaactatcatagagcaggacgaggaagatgttagtgaaatcctagacgttagtgatgaaaagctagacaacagtgatgaacaaacacatgatcatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031205 GO:0031207 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

Sec62

Protein Analysis

368

Amino Acids

42.56

Weight (kDa)

6.3

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20920 AT3G20920
fragaria_vesca	FvH4_3g28770
malus_domestica	MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica	Prupe.4G250000_v2.0.a1
pyrus_communis	pycom03g13190 pycom11g16810
rosa_chinensis	RchiOBHm_Chr5g0052271
rosa_laevigata	RLG00000034829
rosa_multiflora	Rmu_sc0009513.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028110
rosa_rugosa	Rorug05G0273200
rosa_samantha	Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana	Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	813
AccI	GTMKAC	2 cut(s)	383, 540
AciI	CCGC	4 cut(s)	66, 334, 469, 779
AclWI	GGATC	3 cut(s)	776, 887, 900
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	2 cut(s)	41, 312
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	5 cut(s)	96, 705, 843, 912, 992
AflIII	ACRYGT	1 cut(s)	856
AgeI	ACCGGT	1 cut(s)	985
AjnI	CCWGG	2 cut(s)	364, 842
AluBI	AGCT	7 cut(s)	53, 231, 253, 290, 559, 833, 1069
AluI	AGCT	7 cut(s)	53, 231, 253, 290, 559, 833, 1069
Alw21I	GWGCWC	2 cut(s)	255, 640
Alw26I	GTCTC	4 cut(s)	144, 185, 584, 938
AlwI	GGATC	3 cut(s)	776, 887, 900
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	5 cut(s)	67, 389, 470, 503, 903
ApeKI	GCWGC	4 cut(s)	50, 107, 592, 833
ApoI	RAATTY	1 cut(s)	280
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AsiGI	ACCGGT	1 cut(s)	985
AspA2I	CCTAGG	1 cut(s)	95
AspS9I	GGNCC	4 cut(s)	34, 42, 586, 904
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	157, 988
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	3 cut(s)	34, 42, 586
AvrII	CCTAGG	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	813
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	574
Bbv12I	GWGCWC	2 cut(s)	255, 640
BbvI	GCAGC	4 cut(s)	62, 119, 579, 820
BccI	CCATC	3 cut(s)	555, 913, 986
BceAI	ACGGC	2 cut(s)	79, 482
BciT130I	CCWGG	2 cut(s)	366, 844
BclI	TGATCA	1 cut(s)	1096
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	4 cut(s)	144, 185, 584, 938
BfaI	CTAG	6 cut(s)	96, 171, 266, 329, 1049, 1070
BfmI	CTRYAG	2 cut(s)	48, 185
BglI	GCCNNNNNGGC	1 cut(s)	478
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	6 cut(s)	51, 67, 108, 470, 593, 834
BlnI	CCTAGG	1 cut(s)	95
BlsI	GCNGC	6 cut(s)	52, 68, 109, 471, 594, 835
Bme1390I	CCNGG	3 cut(s)	71, 366, 844
Bme18I	GGWCC	3 cut(s)	34, 42, 586
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	4 cut(s)	34, 42, 586, 904
BmiI	GGNNCC	4 cut(s)	35, 587, 815, 894
BmrFI	CCNGG	3 cut(s)	71, 366, 844
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	905
BpuMI	CCSGG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	873
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	95, 365, 690
BsaWI	WCCGGW	1 cut(s)	985
Bsc4I	CCNNNNNNNGG	5 cut(s)	96, 705, 843, 912, 992
Bse118I	RCCGGY	1 cut(s)	985
Bse1I	ACTGG	2 cut(s)	16, 127
Bse3DI	GCAATG	1 cut(s)	964
BseBI	CCWGG	2 cut(s)	366, 844
BseCI	ATCGAT	1 cut(s)	873
BseDI	CCNNGG	3 cut(s)	95, 365, 690
BseGI	GGATG	4 cut(s)	124, 244, 921, 997
BseLI	CCNNNNNNNGG	5 cut(s)	96, 705, 843, 912, 992
BseMI	GCAATG	1 cut(s)	964
BseMII	CTCAG	2 cut(s)	305, 420
BseNI	ACTGG	2 cut(s)	16, 127
BseRI	GAGGAG	2 cut(s)	755, 758
BseX3I	CGGCCG	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	62, 119, 579, 820
BsgI	GTGCAG	2 cut(s)	39, 378
Bsh1285I	CGRYCG	2 cut(s)	70, 343
BshFI	GGCC	5 cut(s)	69, 391, 472, 505, 905
BshNI	GGYRCC	1 cut(s)	813
BshTI	ACCGGT	1 cut(s)	985
BshVI	ATCGAT	1 cut(s)	873
BsiEI	CGRYCG	2 cut(s)	70, 343
BsiHKAI	GWGCWC	2 cut(s)	255, 640
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	70, 986
BslI	CCNNNNNNNGG	5 cut(s)	96, 705, 843, 912, 992
BsmAI	GTCTC	4 cut(s)	144, 185, 584, 938
BsnI	GGCC	5 cut(s)	69, 391, 472, 505, 905
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	255, 640
Bsp143I	GATC	5 cut(s)	340, 405, 768, 892, 1096
BspACI	CCGC	4 cut(s)	66, 334, 469, 779
BspANI	GGCC	5 cut(s)	69, 391, 472, 505, 905
BspCNI	CTCAG	2 cut(s)	306, 421
BspDI	ATCGAT	1 cut(s)	873
BspLI	GGNNCC	4 cut(s)	35, 587, 815, 894
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	3 cut(s)	776, 887, 900
BspQI	GCTCTTC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	813
BspTNI	GGTCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	964
BsrFI	RCCGGY	1 cut(s)	985
BsrI	ACTGG	2 cut(s)	16, 127
BssAI	RCCGGY	1 cut(s)	985
BssECI	CCNNGG	3 cut(s)	95, 365, 690
BssMI	GATC	5 cut(s)	340, 405, 768, 892, 1096
BssNAI	GTATAC	1 cut(s)	541
BssNI	GRCGYC	1 cut(s)	438
BssSI	CACGAG	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	541
Bst2BI	CACGAG	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	366, 844
Bst4CI	ACNGT	3 cut(s)	358, 714, 1079
Bst6I	CTCTTC	2 cut(s)	60, 966
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	105, 393, 557
BstDEI	CTNAG	2 cut(s)	314, 429
BstF5I	GGATG	4 cut(s)	124, 244, 921, 997
BstKTI	GATC	5 cut(s)	343, 408, 771, 895, 1099
BstMAI	GTCTC	4 cut(s)	144, 185, 584, 938
BstMBI	GATC	5 cut(s)	340, 405, 768, 892, 1096
BstMCI	CGRYCG	2 cut(s)	70, 343
BstMWI	GCNNNNNNNGC	6 cut(s)	446, 478, 695, 785, 811, 839
BstNI	CCWGG	2 cut(s)	366, 844
BstSCI	CCNGG	3 cut(s)	69, 364, 842
BstSFI	CTRYAG	2 cut(s)	48, 185
BstV1I	GCAGC	4 cut(s)	62, 119, 579, 820
BstX2I	RGATCY	3 cut(s)	405, 768, 892
BstYI	RGATCY	3 cut(s)	405, 768, 892
BstZ17I	GTATAC	1 cut(s)	541
BstZI	CGGCCG	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	873
BsuRI	GGCC	5 cut(s)	69, 391, 472, 505, 905
BsuTUI	ATCGAT	1 cut(s)	873
BtsCI	GGATG	4 cut(s)	124, 244, 921, 997
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	2 cut(s)	795, 1084
Cac8I	GCNNGC	3 cut(s)	105, 393, 557
Cfr10I	RCCGGY	1 cut(s)	985
Cfr13I	GGNCC	4 cut(s)	34, 42, 586, 904
ClaI	ATCGAT	1 cut(s)	873
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	782
CspAI	ACCGGT	1 cut(s)	985
CviAII	CATG	4 cut(s)	387, 450, 818, 1094
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	2 cut(s)	314, 429
DpnI	GATC	5 cut(s)	342, 407, 770, 894, 1098
DpnII	GATC	5 cut(s)	340, 405, 768, 892, 1096
EaeI	YGGCCR	1 cut(s)	67
EagI	CGGCCG	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	60, 966
EarI	CTCTTC	2 cut(s)	60, 966
Ecl136II	GAGCTC	1 cut(s)	253
EclXI	CGGCCG	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	3 cut(s)	34, 42, 586
Eco52I	CGGCCG	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	41, 312
Eco88I	CYCGRG	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	253
EcoO109I	RGGNCCY	2 cut(s)	42, 586
EcoRII	CCWGG	2 cut(s)	364, 842
EcoT14I	CCWWGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	4 cut(s)	390, 453, 821, 1097
FatI	CATG	4 cut(s)	386, 449, 817, 1093
FbaI	TGATCA	1 cut(s)	1096
FblI	GTMKAC	2 cut(s)	383, 540
Fnu4HI	GCNGC	6 cut(s)	51, 67, 108, 470, 593, 834
FokI	GGATG	4 cut(s)	131, 231, 928, 1004
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	6 cut(s)	51, 67, 108, 470, 593, 834
FspBI	CTAG	6 cut(s)	96, 171, 266, 329, 1049, 1070
GluI	GCNGC	6 cut(s)	51, 67, 108, 470, 593, 834
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	5 cut(s)	69, 391, 472, 505, 905
HapII	CCGG	2 cut(s)	70, 986
HgaI	GACGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	390, 453, 821, 1097
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	3 cut(s)	74, 269, 322
HpaII	CCGG	2 cut(s)	70, 986
HphI	GGTGA	2 cut(s)	157, 988
Hpy166II	GTNNAC	3 cut(s)	384, 541, 759
Hpy188I	TCNGA	8 cut(s)	38, 60, 85, 212, 274, 415, 430, 852
Hpy188III	TCNNGA	3 cut(s)	248, 266, 884
Hpy8I	GTNNAC	3 cut(s)	384, 541, 759
HpyAV	CCTTC	4 cut(s)	33, 136, 211, 451
HpyCH4III	ACNGT	3 cut(s)	358, 714, 1079
HpyCH4IV	ACGT	2 cut(s)	856, 1053
HpyCH4V	TGCA	9 cut(s)	20, 50, 137, 395, 449, 555, 626, 788, 1004
HpyF10VI	GCNNNNNNNGC	6 cut(s)	446, 478, 695, 785, 811, 839
HpyF3I	CTNAG	2 cut(s)	314, 429
HpySE526I	ACGT	2 cut(s)	856, 1053
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	4 cut(s)	390, 453, 821, 1097
Ksp22I	TGATCA	1 cut(s)	1096
Kzo9I	GATC	5 cut(s)	340, 405, 768, 892, 1096
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	745
Lsp1109I	GCAGC	4 cut(s)	62, 119, 579, 820
MaeI	CTAG	6 cut(s)	96, 171, 266, 329, 1049, 1070
MaeII	ACGT	2 cut(s)	856, 1053
MaeIII	GTNAC	2 cut(s)	511, 976
MalI	GATC	5 cut(s)	342, 407, 770, 894, 1098
MboI	GATC	5 cut(s)	340, 405, 768, 892, 1096
MboII	GAAGA	9 cut(s)	16, 47, 305, 317, 382, 385, 763, 983, 1043
MflI	RGATCY	3 cut(s)	405, 768, 892
MhlI	GDGCHC	2 cut(s)	255, 640
MluCI	AATT	3 cut(s)	280, 377, 522
MmeI	TCCRAC	2 cut(s)	102, 108
MseI	TTAA	2 cut(s)	462, 939
MspI	CCGG	2 cut(s)	70, 986
MspR9I	CCNGG	3 cut(s)	71, 366, 844
MvaI	CCWGG	2 cut(s)	366, 844
MwoI	GCNNNNNNNGC	6 cut(s)	446, 478, 695, 785, 811, 839
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	5 cut(s)	340, 405, 768, 892, 1096
NlaIII	CATG	4 cut(s)	390, 453, 821, 1097
NlaIV	GGNNCC	4 cut(s)	35, 587, 815, 894
NmeAIII	GCCGAG	1 cut(s)	715
NmuCI	GTSAC	2 cut(s)	511, 976
PciSI	GCTCTTC	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	74, 269, 322
PinAI	ACCGGT	1 cut(s)	985
PkrI	GCNGC	6 cut(s)	52, 68, 109, 471, 594, 835
Ple19I	CGATCG	1 cut(s)	343
PpuMI	RGGWCCY	2 cut(s)	42, 586
Psp124BI	GAGCTC	1 cut(s)	255
Psp5II	RGGWCCY	2 cut(s)	42, 586
Psp6I	CCWGG	2 cut(s)	364, 842
PspGI	CCWGG	2 cut(s)	364, 842
PspN4I	GGNNCC	4 cut(s)	35, 587, 815, 894
PspPI	GGNCC	4 cut(s)	34, 42, 586, 904
PspPPI	RGGWCCY	2 cut(s)	42, 586
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	3 cut(s)	405, 768, 892
PvuI	CGATCG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
SacI	GAGCTC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	462, 939
SatI	GCNGC	6 cut(s)	51, 67, 108, 470, 593, 834
Sau3AI	GATC	5 cut(s)	340, 405, 768, 892, 1096
Sau96I	GGNCC	4 cut(s)	34, 42, 586, 904
ScrFI	CCNGG	3 cut(s)	71, 366, 844
SduI	GDGCHC	2 cut(s)	255, 640
SfcI	CTRYAG	2 cut(s)	48, 185
SgrAI	CRCCGGYG	1 cut(s)	985
SinI	GGWCC	3 cut(s)	34, 42, 586
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	3 cut(s)	280, 377, 522
SsiI	CCGC	4 cut(s)	66, 334, 469, 779
SspI	AATATT	2 cut(s)	206, 630
SspMI	CTAG	6 cut(s)	96, 171, 266, 329, 1049, 1070
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	69, 364, 842
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	3 cut(s)	358, 714, 1079
TaiI	ACGT	2 cut(s)	859, 1056
TaqI	TCGA	1 cut(s)	873
TasI	AATT	3 cut(s)	280, 377, 522
TauI	GCSGC	2 cut(s)	69, 472
TfiI	GAWTC	3 cut(s)	74, 269, 322
Tru1I	TTAA	2 cut(s)	462, 939
Tru9I	TTAA	2 cut(s)	462, 939
TscAI	CASTG	2 cut(s)	795, 1084
TseFI	GTSAC	2 cut(s)	511, 976
TseI	GCWGC	4 cut(s)	50, 107, 592, 833
Tsp45I	GTSAC	2 cut(s)	511, 976
TspDTI	ATGAA	6 cut(s)	17, 483, 843, 984, 1077, 1098
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	795, 1084
VpaK11BI	GGWCC	3 cut(s)	34, 42, 586
XapI	RAATTY	1 cut(s)	280
XbaI	TCTAGA	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	95
XmiI	GTMKAC	2 cut(s)	383, 540
XspI	CTAG	6 cut(s)	96, 171, 266, 329, 1049, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.