Rh5AG346100

translocation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011885
Physical Location & Seq
Forward (+)
57070916 .. 57077686
6771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG346100.1

Sequence Viewer

Length: 1023 bp
ATGATTTTCTTTCAGAAACAAGCAGCCAAGCAGGATGAGTTCCAGTTGTTTGCAGAGAAGGTGAGAGACCACAAGGATTTGGTGTCTAGGTGGGCTGTTCTACAGGAGACACGGGTAGAATATTTCAGAGGGAAGGATTTTGTAAGCTTTTTGAGAAATCATCCAGAGCTCAAAGACATTCTAGAATCAGATAGGAATTTAGAAGCTGAAGATATTGCCAATATCTTACTGAGAAAGAATCTTCTAGTGCGGTGCGATCGTGTTGTGAAAACTGTTCGTCCTGGGAAGAAGAAATTGTCTACATGGCCTGCACATTTGGAGATCTTTTCAGAGCAAGGATTTTCTGAGAATGACGCCTTCTTTGCATGGACTTTTGTTAAACGGCGGCCTCTCTGGCAGACGCTTCTTTCATTTTTCTGGCCTGTTGTGACATTGGCAATTTGCTTGTTTCCTGTATACCCCCATCGGTGCAAGCTACTAATACTCTACTCGTGTCTCGGGGTCCTGCTGCTTTTCCTTTCTCTACTTGTTTTGAGGGGTGCAATATTTGGTGCTCTATACATTGTTTTGGGGAAGCGAGTTTGGTTTTTCCCAAACATTCTCGCCGAGGAAGCCACTTTGAGGGAACTGTTCCGTTTCTGCCCCCAGAAAGATGAGGAGGAGCGACCAAAGTGGACAACAAGGATCTTCTATGCGGTACTTGCAGTGCTGGTCATATTGCTGATGAGGCACCATGCCCCTGATGAAGCTGCCAGAGCCAGGTATCAGAAACGTGTATCAAATATAATCGATGATGTTCTTGAGTGGGATCCAAGATTGGCCCTCTCTGGGATGATGGAGAAGCAATCTTTGTTTAATGAGACAGAGCCAAGCAATGCTACTGATGAAGAGGTGACACCACCGGTGGATGGGGTGGGTGCAAAAACTATCATAGAGCAGGACGAGGAAGATGTTAGTGAAATCCTAGACGTTAGTGATGAAAAGCTAGACAACAGTGATGAACAAACACATGATCATATATGA

Protein Analysis

340

Amino Acids

39.68

Weight (kDa)

5.52

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec62 PF03839 69 - 202 5.3e-14 Translocation protein Sec62
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011885)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20920 AT3G20920
fragaria_vesca FvH4_3g28770
malus_domestica MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica Prupe.4G250000_v2.0.a1
pyrus_communis pycom03g13190 pycom11g16810
rosa_chinensis RchiOBHm_Chr5g0052271
rosa_laevigata RLG00000034829
rosa_multiflora Rmu_sc0009513.1_g000001
rosa_roxburghii Rroxscaffold_1G00028110
rosa_rugosa Rorug05G0273200
rosa_samantha Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 729
AccI GTMKAC 2 cut(s) 299, 456
AciI CCGC 3 cut(s) 250, 385, 695
AclWI GGATC 3 cut(s) 692, 803, 816
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 1 cut(s) 699
AfiI CCNNNNNNNGG 4 cut(s) 621, 759, 828, 908
AflIII ACRYGT 1 cut(s) 772
AgeI ACCGGT 1 cut(s) 901
AjnI CCWGG 2 cut(s) 280, 758
AluBI AGCT 6 cut(s) 147, 169, 206, 475, 749, 985
AluI AGCT 6 cut(s) 147, 169, 206, 475, 749, 985
Alw21I GWGCWC 2 cut(s) 171, 556
Alw26I GTCTC 4 cut(s) 60, 101, 500, 854
AlwI GGATC 3 cut(s) 692, 803, 816
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 4 cut(s) 305, 386, 419, 819
ApeKI GCWGC 3 cut(s) 23, 508, 749
ApoI RAATTY 1 cut(s) 196
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AsiGI ACCGGT 1 cut(s) 901
AspS9I GGNCC 2 cut(s) 502, 820
AsuHPI GGTGA 2 cut(s) 73, 904
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 1 cut(s) 502
BamHI GGATCC 1 cut(s) 808
BanI GGYRCC 1 cut(s) 729
BanII GRGCYC 1 cut(s) 171
BauI CACGAG 1 cut(s) 490
Bbv12I GWGCWC 2 cut(s) 171, 556
BbvI GCAGC 3 cut(s) 35, 495, 736
BccI CCATC 3 cut(s) 471, 829, 902
BceAI ACGGC 1 cut(s) 398
BciT130I CCWGG 2 cut(s) 282, 760
BclI TGATCA 1 cut(s) 1012
BcoDI GTCTC 4 cut(s) 60, 101, 500, 854
BfaI CTAG 5 cut(s) 87, 182, 245, 965, 986
BfmI CTRYAG 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 394
BglII AGATCT 1 cut(s) 321
BisI GCNGC 4 cut(s) 24, 386, 509, 750
BlsI GCNGC 4 cut(s) 25, 387, 510, 751
Bme1390I CCNGG 2 cut(s) 282, 760
Bme18I GGWCC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 2 cut(s) 502, 820
BmiI GGNNCC 3 cut(s) 503, 731, 810
BmrFI CCNGG 2 cut(s) 282, 760
BpuEI CTTGAG 1 cut(s) 821
Bsa29I ATCGAT 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 281, 606
BsaWI WCCGGW 1 cut(s) 901
Bsc4I CCNNNNNNNGG 4 cut(s) 621, 759, 828, 908
Bse118I RCCGGY 1 cut(s) 901
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 880
BseBI CCWGG 2 cut(s) 282, 760
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 2 cut(s) 281, 606
BseGI GGATG 4 cut(s) 40, 160, 837, 913
BseLI CCNNNNNNNGG 4 cut(s) 621, 759, 828, 908
BseMI GCAATG 1 cut(s) 880
BseMII CTCAG 2 cut(s) 221, 336
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 671, 674
BseXI GCAGC 3 cut(s) 35, 495, 736
BsgI GTGCAG 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 4 cut(s) 307, 388, 421, 821
BshNI GGYRCC 1 cut(s) 729
BshTI ACCGGT 1 cut(s) 901
BshVI ATCGAT 1 cut(s) 789
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 171, 556
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 1 cut(s) 902
BslI CCNNNNNNNGG 4 cut(s) 621, 759, 828, 908
BsmAI GTCTC 4 cut(s) 60, 101, 500, 854
BsnI GGCC 4 cut(s) 307, 388, 421, 821
Bso31I GGTCTC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 2 cut(s) 171, 556
Bsp143I GATC 5 cut(s) 256, 321, 684, 808, 1012
BspACI CCGC 3 cut(s) 250, 385, 695
BspANI GGCC 4 cut(s) 307, 388, 421, 821
BspCNI CTCAG 2 cut(s) 222, 337
BspDI ATCGAT 1 cut(s) 789
BspLI GGNNCC 3 cut(s) 503, 731, 810
BspPI GGATC 3 cut(s) 692, 803, 816
BspT107I GGYRCC 1 cut(s) 729
BspTNI GGTCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 880
BsrFI RCCGGY 1 cut(s) 901
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 901
BssECI CCNNGG 2 cut(s) 281, 606
BssMI GATC 5 cut(s) 256, 321, 684, 808, 1012
BssNAI GTATAC 1 cut(s) 457
BssNI GRCGYC 1 cut(s) 354
BssSI CACGAG 1 cut(s) 490
Bst1107I GTATAC 1 cut(s) 457
Bst2BI CACGAG 1 cut(s) 490
Bst2UI CCWGG 2 cut(s) 282, 760
Bst4CI ACNGT 3 cut(s) 274, 630, 995
Bst6I CTCTTC 1 cut(s) 882
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 309, 473
BstDEI CTNAG 2 cut(s) 230, 345
BstF5I GGATG 4 cut(s) 40, 160, 837, 913
BstKTI GATC 5 cut(s) 259, 324, 687, 811, 1015
BstMAI GTCTC 4 cut(s) 60, 101, 500, 854
BstMBI GATC 5 cut(s) 256, 321, 684, 808, 1012
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 6 cut(s) 362, 394, 611, 701, 727, 755
BstNI CCWGG 2 cut(s) 282, 760
BstSCI CCNGG 2 cut(s) 280, 758
BstSFI CTRYAG 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 35, 495, 736
BstX2I RGATCY 3 cut(s) 321, 684, 808
BstYI RGATCY 3 cut(s) 321, 684, 808
BstZ17I GTATAC 1 cut(s) 457
Bsu15I ATCGAT 1 cut(s) 789
BsuRI GGCC 4 cut(s) 307, 388, 421, 821
BsuTUI ATCGAT 1 cut(s) 789
BtsCI GGATG 4 cut(s) 40, 160, 837, 913
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 2 cut(s) 711, 1000
Cac8I GCNNGC 2 cut(s) 309, 473
Cfr10I RCCGGY 1 cut(s) 901
Cfr13I GGNCC 2 cut(s) 502, 820
ClaI ATCGAT 1 cut(s) 789
CseI GACGC 2 cut(s) 362, 409
Csp6I GTAC 1 cut(s) 698
CspAI ACCGGT 1 cut(s) 901
CviAII CATG 4 cut(s) 303, 366, 734, 1010
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 2 cut(s) 230, 345
DpnI GATC 5 cut(s) 258, 323, 686, 810, 1014
DpnII GATC 5 cut(s) 256, 321, 684, 808, 1012
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 280, 758
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 4 cut(s) 306, 369, 737, 1013
FatI CATG 4 cut(s) 302, 365, 733, 1009
FbaI TGATCA 1 cut(s) 1012
FblI GTMKAC 2 cut(s) 299, 456
Fnu4HI GCNGC 4 cut(s) 24, 386, 509, 750
FokI GGATG 4 cut(s) 47, 147, 844, 920
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 4 cut(s) 24, 386, 509, 750
FspBI CTAG 5 cut(s) 87, 182, 245, 965, 986
GluI GCNGC 4 cut(s) 24, 386, 509, 750
HaeIII GGCC 4 cut(s) 307, 388, 421, 821
HapII CCGG 1 cut(s) 902
HgaI GACGC 2 cut(s) 362, 409
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 4 cut(s) 306, 369, 737, 1013
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 2 cut(s) 185, 238
HpaII CCGG 1 cut(s) 902
HphI GGTGA 2 cut(s) 73, 904
Hpy166II GTNNAC 3 cut(s) 300, 457, 675
Hpy188I TCNGA 6 cut(s) 15, 128, 190, 331, 346, 768
Hpy188III TCNNGA 3 cut(s) 164, 182, 800
Hpy8I GTNNAC 3 cut(s) 300, 457, 675
HpyAV CCTTC 3 cut(s) 52, 127, 367
HpyCH4III ACNGT 3 cut(s) 274, 630, 995
HpyCH4IV ACGT 2 cut(s) 772, 969
HpyCH4V TGCA 7 cut(s) 53, 311, 365, 471, 542, 704, 920
HpyF10VI GCNNNNNNNGC 6 cut(s) 362, 394, 611, 701, 727, 755
HpyF3I CTNAG 2 cut(s) 230, 345
HpySE526I ACGT 2 cut(s) 772, 969
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 4 cut(s) 306, 369, 737, 1013
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 5 cut(s) 256, 321, 684, 808, 1012
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 3 cut(s) 35, 495, 736
MaeI CTAG 5 cut(s) 87, 182, 245, 965, 986
MaeII ACGT 2 cut(s) 772, 969
MaeIII GTNAC 2 cut(s) 427, 892
MalI GATC 5 cut(s) 258, 323, 686, 810, 1014
MboI GATC 5 cut(s) 256, 321, 684, 808, 1012
MboII GAAGA 7 cut(s) 221, 233, 298, 301, 679, 899, 959
MflI RGATCY 3 cut(s) 321, 684, 808
MhlI GDGCHC 2 cut(s) 171, 556
MluCI AATT 3 cut(s) 196, 293, 438
MseI TTAA 2 cut(s) 378, 855
MspI CCGG 1 cut(s) 902
MspR9I CCNGG 2 cut(s) 282, 760
MvaI CCWGG 2 cut(s) 282, 760
MwoI GCNNNNNNNGC 6 cut(s) 362, 394, 611, 701, 727, 755
NdeII GATC 5 cut(s) 256, 321, 684, 808, 1012
NlaIII CATG 4 cut(s) 306, 369, 737, 1013
NlaIV GGNNCC 3 cut(s) 503, 731, 810
NmeAIII GCCGAG 1 cut(s) 631
NmuCI GTSAC 2 cut(s) 427, 892
PfeI GAWTC 2 cut(s) 185, 238
PinAI ACCGGT 1 cut(s) 901
PkrI GCNGC 4 cut(s) 25, 387, 510, 751
Ple19I CGATCG 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 2 cut(s) 280, 758
PspGI CCWGG 2 cut(s) 280, 758
PspN4I GGNNCC 3 cut(s) 503, 731, 810
PspPI GGNCC 2 cut(s) 502, 820
PspPPI RGGWCCY 1 cut(s) 502
PsuI RGATCY 3 cut(s) 321, 684, 808
PvuI CGATCG 1 cut(s) 259
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 378, 855
SatI GCNGC 4 cut(s) 24, 386, 509, 750
Sau3AI GATC 5 cut(s) 256, 321, 684, 808, 1012
Sau96I GGNCC 2 cut(s) 502, 820
ScrFI CCNGG 2 cut(s) 282, 760
SduI GDGCHC 2 cut(s) 171, 556
SfcI CTRYAG 1 cut(s) 101
SgrAI CRCCGGYG 1 cut(s) 901
SinI GGWCC 1 cut(s) 502
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
Sse9I AATT 3 cut(s) 196, 293, 438
SsiI CCGC 3 cut(s) 250, 385, 695
SspI AATATT 2 cut(s) 122, 546
SspMI CTAG 5 cut(s) 87, 182, 245, 965, 986
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 280, 758
TaaI ACNGT 3 cut(s) 274, 630, 995
TaiI ACGT 2 cut(s) 775, 972
TaqI TCGA 1 cut(s) 789
TasI AATT 3 cut(s) 196, 293, 438
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 2 cut(s) 185, 238
Tru1I TTAA 2 cut(s) 378, 855
Tru9I TTAA 2 cut(s) 378, 855
TscAI CASTG 2 cut(s) 711, 1000
TseFI GTSAC 2 cut(s) 427, 892
TseI GCWGC 3 cut(s) 23, 508, 749
Tsp45I GTSAC 2 cut(s) 427, 892
TspDTI ATGAA 5 cut(s) 399, 759, 900, 993, 1014
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 2 cut(s) 711, 1000
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 1 cut(s) 196
XbaI TCTAGA 1 cut(s) 181
XmiI GTMKAC 2 cut(s) 299, 456
XspI CTAG 5 cut(s) 87, 182, 245, 965, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.